data_5N6A # _model_server_result.job_id QuTeb47nD63ZQSjLL0eKEQ _model_server_result.datetime_utc '2024-10-18 15:30:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":904}' # _entry.id 5N6A # _exptl.entry_id 5N6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N6A _cell.length_a 87.66 _cell.length_b 149.83 _cell.length_c 154.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 185 A THR 185 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc2 A OG SER 242 A SER 242 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc3 B O3B ADP . A ADP 901 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc4 C O4 PO4 . A PO4 902 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 D MG MG . A MG 903 1_555 F O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc6 D MG MG . A MG 903 1_555 F O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 173 n n C1 C2 GOL sing 174 n n C1 H11 GOL sing 175 n n C1 H12 GOL sing 176 n n O1 HO1 GOL sing 177 n n C2 O2 GOL sing 178 n n C2 C3 GOL sing 179 n n C2 H2 GOL sing 180 n n O2 HO2 GOL sing 181 n n C3 O3 GOL sing 182 n n C3 H31 GOL sing 183 n n C3 H32 GOL sing 184 n n O3 HO3 GOL sing 185 n n # _atom_sites.entry_id 5N6A _atom_sites.fract_transf_matrix[1][1] 0.011408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 901 1 ADP ADP . C 3 PO4 A 1 902 2 PO4 PO4 . D 4 MG A 1 903 3 MG MG . E 5 GOL A 1 904 1 GOL GOL . F 6 HOH A 1 1001 35 HOH HOH . F 6 HOH A 2 1002 4 HOH HOH . F 6 HOH A 3 1003 1 HOH HOH . F 6 HOH A 4 1004 2 HOH HOH . F 6 HOH A 5 1005 6 HOH HOH . F 6 HOH A 6 1006 33 HOH HOH . F 6 HOH A 7 1007 15 HOH HOH . F 6 HOH A 8 1008 23 HOH HOH . F 6 HOH A 9 1009 11 HOH HOH . F 6 HOH A 10 1010 10 HOH HOH . F 6 HOH A 11 1011 14 HOH HOH . F 6 HOH A 12 1012 7 HOH HOH . F 6 HOH A 13 1013 32 HOH HOH . F 6 HOH A 14 1014 36 HOH HOH . F 6 HOH A 15 1015 38 HOH HOH . F 6 HOH A 16 1016 37 HOH HOH . F 6 HOH A 17 1017 13 HOH HOH . F 6 HOH A 18 1018 27 HOH HOH . F 6 HOH A 19 1019 29 HOH HOH . F 6 HOH A 20 1020 17 HOH HOH . F 6 HOH A 21 1021 12 HOH HOH . F 6 HOH A 22 1022 24 HOH HOH . F 6 HOH A 23 1023 9 HOH HOH . F 6 HOH A 24 1024 26 HOH HOH . F 6 HOH A 25 1025 16 HOH HOH . F 6 HOH A 26 1026 25 HOH HOH . F 6 HOH A 27 1027 3 HOH HOH . F 6 HOH A 28 1028 22 HOH HOH . F 6 HOH A 29 1029 34 HOH HOH . F 6 HOH A 30 1030 30 HOH HOH . F 6 HOH A 31 1031 19 HOH HOH . F 6 HOH A 32 1032 8 HOH HOH . F 6 HOH A 33 1033 18 HOH HOH . F 6 HOH A 34 1034 28 HOH HOH . F 6 HOH A 35 1035 21 HOH HOH . F 6 HOH A 36 1036 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 -2.456 40.325 -48.177 1 74.88 ? C1 GOL 904 A 1 HETATM 2 O O1 GOL . . . E 5 -3.566 40.499 -47.308 1 72.92 ? O1 GOL 904 A 1 HETATM 3 C C2 GOL . . . E 5 -1.219 39.927 -47.409 1 77.03 ? C2 GOL 904 A 1 HETATM 4 O O2 GOL . . . E 5 -1.555 38.88 -46.495 1 78.47 ? O2 GOL 904 A 1 HETATM 5 C C3 GOL . . . E 5 -0.185 39.423 -48.391 1 77.83 ? C3 GOL 904 A 1 HETATM 6 O O3 GOL . . . E 5 0.979 38.94 -47.729 1 77.83 ? O3 GOL 904 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 6 #