data_5N6C # _model_server_result.job_id 9UKBCcjifUjfAO4DT8Aasw _model_server_result.datetime_utc '2024-11-22 20:27:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5N6C # _exptl.entry_id 5N6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.4 _cell.angle_gamma 90 _cell.entry_id 5N6C _cell.length_a 43.523 _cell.length_b 109.719 _cell.length_c 66.923 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 5N6C _atom_sites.fract_transf_matrix[1][1] 0.022976 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001769 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014987 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TLA A 1 401 1 TLA LTA . D 3 NAD A 1 402 1 NAD NAD . E 3 NAD B 1 401 2 NAD NAD . F 4 HOH A 1 501 33 HOH HOH . F 4 HOH A 2 502 20 HOH HOH . F 4 HOH A 3 503 42 HOH HOH . F 4 HOH A 4 504 3 HOH HOH . F 4 HOH A 5 505 47 HOH HOH . F 4 HOH A 6 506 55 HOH HOH . F 4 HOH A 7 507 23 HOH HOH . F 4 HOH A 8 508 70 HOH HOH . F 4 HOH A 9 509 62 HOH HOH . F 4 HOH A 10 510 61 HOH HOH . F 4 HOH A 11 511 9 HOH HOH . F 4 HOH A 12 512 32 HOH HOH . F 4 HOH A 13 513 27 HOH HOH . F 4 HOH A 14 514 25 HOH HOH . F 4 HOH A 15 515 68 HOH HOH . F 4 HOH A 16 516 46 HOH HOH . F 4 HOH A 17 517 73 HOH HOH . F 4 HOH A 18 518 64 HOH HOH . F 4 HOH A 19 519 43 HOH HOH . F 4 HOH A 20 520 2 HOH HOH . F 4 HOH A 21 521 77 HOH HOH . F 4 HOH A 22 522 4 HOH HOH . F 4 HOH A 23 523 49 HOH HOH . F 4 HOH A 24 524 22 HOH HOH . F 4 HOH A 25 525 51 HOH HOH . F 4 HOH A 26 526 30 HOH HOH . F 4 HOH A 27 527 10 HOH HOH . F 4 HOH A 28 528 38 HOH HOH . F 4 HOH A 29 529 19 HOH HOH . F 4 HOH A 30 530 39 HOH HOH . F 4 HOH A 31 531 29 HOH HOH . F 4 HOH A 32 532 17 HOH HOH . F 4 HOH A 33 533 26 HOH HOH . F 4 HOH A 34 534 75 HOH HOH . F 4 HOH A 35 535 34 HOH HOH . F 4 HOH A 36 536 71 HOH HOH . F 4 HOH A 37 537 76 HOH HOH . F 4 HOH A 38 538 36 HOH HOH . G 4 HOH B 1 501 66 HOH HOH . G 4 HOH B 2 502 41 HOH HOH . G 4 HOH B 3 503 54 HOH HOH . G 4 HOH B 4 504 65 HOH HOH . G 4 HOH B 5 505 7 HOH HOH . G 4 HOH B 6 506 45 HOH HOH . G 4 HOH B 7 507 5 HOH HOH . G 4 HOH B 8 508 57 HOH HOH . G 4 HOH B 9 509 67 HOH HOH . G 4 HOH B 10 510 37 HOH HOH . G 4 HOH B 11 511 56 HOH HOH . G 4 HOH B 12 512 69 HOH HOH . G 4 HOH B 13 513 13 HOH HOH . G 4 HOH B 14 514 58 HOH HOH . G 4 HOH B 15 515 6 HOH HOH . G 4 HOH B 16 516 50 HOH HOH . G 4 HOH B 17 517 59 HOH HOH . G 4 HOH B 18 518 28 HOH HOH . G 4 HOH B 19 519 60 HOH HOH . G 4 HOH B 20 520 18 HOH HOH . G 4 HOH B 21 521 44 HOH HOH . G 4 HOH B 22 522 40 HOH HOH . G 4 HOH B 23 523 21 HOH HOH . G 4 HOH B 24 524 53 HOH HOH . G 4 HOH B 25 525 14 HOH HOH . G 4 HOH B 26 526 63 HOH HOH . G 4 HOH B 27 527 1 HOH HOH . G 4 HOH B 28 528 74 HOH HOH . G 4 HOH B 29 529 24 HOH HOH . G 4 HOH B 30 530 11 HOH HOH . G 4 HOH B 31 531 35 HOH HOH . G 4 HOH B 32 532 31 HOH HOH . G 4 HOH B 33 533 16 HOH HOH . G 4 HOH B 34 534 72 HOH HOH . G 4 HOH B 35 535 52 HOH HOH . G 4 HOH B 36 536 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 3 19.982 54.213 41.088 1 34.68 ? PA NAD 402 A 1 HETATM 2 O O1A NAD . . . D 3 20.122 55.291 40.072 1 36.83 ? O1A NAD 402 A 1 HETATM 3 O O2A NAD . . . D 3 19.4 52.943 40.54 1 32.29 ? O2A NAD 402 A 1 HETATM 4 O O5B NAD . . . D 3 19.169 54.791 42.275 1 26.59 ? O5B NAD 402 A 1 HETATM 5 C C5B NAD . . . D 3 19.533 55.96 42.932 1 28.01 ? C5B NAD 402 A 1 HETATM 6 C C4B NAD . . . D 3 18.275 56.447 43.646 1 28.47 ? C4B NAD 402 A 1 HETATM 7 O O4B NAD . . . D 3 18.552 57.413 44.651 1 29.14 ? O4B NAD 402 A 1 HETATM 8 C C3B NAD . . . D 3 17.26 57.059 42.66 1 31.09 ? C3B NAD 402 A 1 HETATM 9 O O3B NAD . . . D 3 16.011 56.35 42.664 1 35.57 ? O3B NAD 402 A 1 HETATM 10 C C2B NAD . . . D 3 17.073 58.468 43.156 1 29.02 ? C2B NAD 402 A 1 HETATM 11 O O2B NAD . . . D 3 15.728 59.004 43.12 1 34.89 ? O2B NAD 402 A 1 HETATM 12 C C1B NAD . . . D 3 17.429 58.304 44.612 1 27.73 ? C1B NAD 402 A 1 HETATM 13 N N9A NAD . . . D 3 17.625 59.595 45.255 1 20.42 ? N9A NAD 402 A 1 HETATM 14 C C8A NAD . . . D 3 18.055 60.713 44.624 1 19.39 ? C8A NAD 402 A 1 HETATM 15 N N7A NAD . . . D 3 18.108 61.722 45.539 1 20.67 ? N7A NAD 402 A 1 HETATM 16 C C5A NAD . . . D 3 17.716 61.252 46.718 1 16.87 ? C5A NAD 402 A 1 HETATM 17 C C6A NAD . . . D 3 17.527 61.84 47.977 1 20.59 ? C6A NAD 402 A 1 HETATM 18 N N6A NAD . . . D 3 17.83 63.145 48.095 1 23.69 ? N6A NAD 402 A 1 HETATM 19 N N1A NAD . . . D 3 17.099 61.073 49.007 1 21.7 ? N1A NAD 402 A 1 HETATM 20 C C2A NAD . . . D 3 16.781 59.786 48.777 1 17.84 ? C2A NAD 402 A 1 HETATM 21 N N3A NAD . . . D 3 16.891 59.238 47.569 1 17.48 ? N3A NAD 402 A 1 HETATM 22 C C4A NAD . . . D 3 17.381 59.871 46.533 1 17.77 ? C4A NAD 402 A 1 HETATM 23 O O3 NAD . . . D 3 21.363 53.942 41.903 1 29.6 ? O3 NAD 402 A 1 HETATM 24 P PN NAD . . . D 3 21.893 52.522 42.44 1 29.42 ? PN NAD 402 A 1 HETATM 25 O O1N NAD . . . D 3 22.234 51.761 41.214 1 24.52 ? O1N NAD 402 A 1 HETATM 26 O O2N NAD . . . D 3 21.077 51.893 43.5 1 30.93 ? O2N NAD 402 A 1 HETATM 27 O O5D NAD . . . D 3 23.113 53.046 43.346 1 26.97 ? O5D NAD 402 A 1 HETATM 28 C C5D NAD . . . D 3 22.948 53.773 44.52 1 28.62 ? C5D NAD 402 A 1 HETATM 29 C C4D NAD . . . D 3 24.298 54.188 45.12 1 31.2 ? C4D NAD 402 A 1 HETATM 30 O O4D NAD . . . D 3 25.189 53.11 45.494 1 29.86 ? O4D NAD 402 A 1 HETATM 31 C C3D NAD . . . D 3 25.069 55.087 44.147 1 33.06 ? C3D NAD 402 A 1 HETATM 32 O O3D NAD . . . D 3 25.714 56.137 44.9 1 32.39 ? O3D NAD 402 A 1 HETATM 33 C C2D NAD . . . D 3 26.037 54.104 43.542 1 30.6 ? C2D NAD 402 A 1 HETATM 34 O O2D NAD . . . D 3 27.167 54.742 43.004 1 38.89 ? O2D NAD 402 A 1 HETATM 35 C C1D NAD . . . D 3 26.409 53.276 44.743 1 29.55 ? C1D NAD 402 A 1 HETATM 36 N N1N NAD . . . D 3 27.139 52.001 44.421 1 25.75 ? N1N NAD 402 A 1 HETATM 37 C C2N NAD . . . D 3 28.063 51.56 45.325 1 22.64 ? C2N NAD 402 A 1 HETATM 38 C C3N NAD . . . D 3 28.781 50.384 45.092 1 22.73 ? C3N NAD 402 A 1 HETATM 39 C C7N NAD . . . D 3 29.849 49.952 46.013 1 20.43 ? C7N NAD 402 A 1 HETATM 40 O O7N NAD . . . D 3 29.878 50.208 47.222 1 19.97 ? O7N NAD 402 A 1 HETATM 41 N N7N NAD . . . D 3 30.803 49.239 45.454 1 22.49 ? N7N NAD 402 A 1 HETATM 42 C C4N NAD . . . D 3 28.526 49.629 43.95 1 23.86 ? C4N NAD 402 A 1 HETATM 43 C C5N NAD . . . D 3 27.508 50.09 43.084 1 27.02 ? C5N NAD 402 A 1 HETATM 44 C C6N NAD . . . D 3 26.845 51.27 43.352 1 24.45 ? C6N NAD 402 A 1 # _model_server_stats.io_time_ms 99 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #