data_5N6L
#
_model_server_result.job_id            cm27wTDx2VX46hnQsUd0Yw 
_model_server_result.datetime_utc      '2024-11-05 13:51:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n6l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":611}' 
#
_entry.id    5N6L 
#
_exptl.entry_id    5N6L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    27 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5N6L 
_cell.length_a            55.22 
_cell.length_b            142.95 
_cell.length_c            197.71 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N6L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,PA 1 1 
B,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,QA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
? 2 JA N N 
? 2 KA N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 250 n n 
C10 C9 OLC doub 251 n n 
C10 C11 OLC sing 252 n n 
C9 C8 OLC sing 253 n n 
C17 C16 OLC sing 254 z n 
C11 C12 OLC sing 255 n n 
C8 C7 OLC sing 256 n n 
C24 C22 OLC sing 257 n n 
C24 O25 OLC sing 258 n n 
C16 C15 OLC sing 259 n n 
C12 C13 OLC sing 260 n n 
C7 C6 OLC sing 261 n n 
C15 C14 OLC sing 262 n n 
C13 C14 OLC sing 263 n n 
C6 C5 OLC sing 264 n n 
C5 C4 OLC sing 265 n n 
C4 C3 OLC sing 266 n n 
C3 C2 OLC sing 267 n n 
C2 C1 OLC sing 268 n n 
C21 C22 OLC sing 269 n n 
C21 O20 OLC sing 270 n n 
C1 O19 OLC doub 271 n n 
C1 O20 OLC sing 272 n n 
C22 O23 OLC sing 273 n n 
C18 H18 OLC sing 274 n n 
C18 H18A OLC sing 275 n n 
C18 H18B OLC sing 276 n n 
C10 H10 OLC sing 277 n n 
C9 H9 OLC sing 278 n n 
C17 H17 OLC sing 279 n n 
C17 H17A OLC sing 280 n n 
C11 H11 OLC sing 281 n n 
C11 H11A OLC sing 282 n n 
C8 H8 OLC sing 283 n n 
C8 H8A OLC sing 284 n n 
C24 H24 OLC sing 285 n n 
C24 H24A OLC sing 286 n n 
C16 H16 OLC sing 287 n n 
C16 H16A OLC sing 288 n n 
C12 H12 OLC sing 289 n n 
C12 H12A OLC sing 290 n n 
C7 H7 OLC sing 291 n n 
C7 H7A OLC sing 292 n n 
C15 H15 OLC sing 293 n n 
C15 H15A OLC sing 294 n n 
C13 H13 OLC sing 295 n n 
C13 H13A OLC sing 296 n n 
C6 H6 OLC sing 297 n n 
C6 H6A OLC sing 298 n n 
C14 H14 OLC sing 299 n n 
C14 H14A OLC sing 300 n n 
C5 H5 OLC sing 301 n n 
C5 H5A OLC sing 302 n n 
C4 H4 OLC sing 303 n n 
C4 H4A OLC sing 304 n n 
C3 H3 OLC sing 305 n n 
C3 H3A OLC sing 306 n n 
C2 H2 OLC sing 307 n n 
C2 H2A OLC sing 308 n n 
C21 H21 OLC sing 309 n n 
C21 H21A OLC sing 310 n n 
C22 H22 OLC sing 311 n n 
O25 HO25 OLC sing 312 n n 
O23 HO23 OLC sing 313 n n 
#
_atom_sites.entry_id                     5N6L 
_atom_sites.fract_transf_matrix[1][1]    0.018109 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006995 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005058 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OLC A 1 601 1 OLC OLC . 
D 2 OLC A 1 602 2 OLC OLC . 
E 2 OLC A 1 603 5 OLC OLC . 
F 2 OLC A 1 604 6 OLC OLC . 
G 2 OLC A 1 605 7 OLC OLC . 
H 2 OLC A 1 606 9 OLC OLC . 
I 2 OLC A 1 607 11 OLC OLC . 
J 2 OLC A 1 608 19 OLC OLC . 
K 2 OLC A 1 609 22 OLC OLC . 
L 2 OLC A 1 610 24 OLC OLC . 
M 2 OLC A 1 611 26 OLC OLC . 
N 2 OLC A 1 612 27 OLC OLC . 
O 2 OLC A 1 613 30 OLC OLC . 
P 2 OLC A 1 614 35 OLC OLC . 
Q 2 OLC A 1 615 37 OLC OLC . 
R 2 OLC A 1 616 39 OLC OLC . 
S 2 OLC A 1 617 41 OLC OLC . 
T 2 OLC A 1 618 42 OLC OLC . 
U 2 OLC A 1 619 44 OLC OLC . 
V 3 GOL A 1 620 16 GOL GOL . 
W 3 GOL A 1 621 27 GOL GOL . 
X 3 GOL A 1 622 31 GOL GOL . 
Y 3 GOL A 1 623 32 GOL GOL . 
Z 3 GOL A 1 624 33 GOL GOL . 
AA 3 GOL A 1 625 39 GOL GOL . 
BA 3 GOL A 1 626 40 GOL GOL . 
CA 3 GOL A 1 627 43 GOL GOL . 
DA 2 OLC B 1 601 3 OLC OLC . 
EA 2 OLC B 1 602 4 OLC OLC . 
FA 2 OLC B 1 603 16 OLC OLC . 
GA 2 OLC B 1 604 17 OLC OLC . 
HA 2 OLC B 1 605 29 OLC OLC . 
IA 2 OLC B 1 606 36 OLC OLC . 
JA 2 OLC B 1 607 43 OLC OLC . 
KA 2 OLC B 1 608 45 OLC OLC . 
LA 3 GOL B 1 609 7 GOL GOL . 
MA 3 GOL B 1 610 11 GOL GOL . 
NA 3 GOL B 1 611 38 GOL GOL . 
OA 3 GOL B 1 612 44 GOL GOL . 
PA 4 HOH A 1 701 218 HOH HOH . 
PA 4 HOH A 2 702 202 HOH HOH . 
PA 4 HOH A 3 703 56 HOH HOH . 
PA 4 HOH A 4 704 210 HOH HOH . 
PA 4 HOH A 5 705 230 HOH HOH . 
PA 4 HOH A 6 706 220 HOH HOH . 
PA 4 HOH A 7 707 195 HOH HOH . 
PA 4 HOH A 8 708 233 HOH HOH . 
QA 4 HOH B 1 701 216 HOH HOH . 
QA 4 HOH B 2 702 212 HOH HOH . 
QA 4 HOH B 3 703 232 HOH HOH . 
QA 4 HOH B 4 704 231 HOH HOH . 
QA 4 HOH B 5 705 225 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C9 OLC . . . M 2 -14.433 -3.532 7.109 1 97.78 ? C9 OLC 611 A 1 
HETATM 2 C C8 OLC . . . M 2 -13.775 -3.961 8.4 1 95.98 ? C8 OLC 611 A 1 
HETATM 3 C C24 OLC . . . M 2 -8.686 -2.474 18.766 1 96.27 ? C24 OLC 611 A 1 
HETATM 4 C C7 OLC . . . M 2 -12.276 -3.786 8.311 1 94.84 ? C7 OLC 611 A 1 
HETATM 5 C C6 OLC . . . M 2 -11.732 -3.574 9.708 1 94.26 ? C6 OLC 611 A 1 
HETATM 6 C C5 OLC . . . M 2 -10.221 -3.675 9.71 1 93.82 ? C5 OLC 611 A 1 
HETATM 7 C C4 OLC . . . M 2 -9.632 -2.578 10.573 1 93.13 ? C4 OLC 611 A 1 
HETATM 8 C C3 OLC . . . M 2 -8.878 -3.156 11.753 1 92.29 ? C3 OLC 611 A 1 
HETATM 9 C C2 OLC . . . M 2 -9.367 -2.501 13.029 1 94.79 ? C2 OLC 611 A 1 
HETATM 10 C C21 OLC . . . M 2 -8.1 -2.216 16.375 1 95.84 ? C21 OLC 611 A 1 
HETATM 11 C C1 OLC . . . M 2 -8.235 -2.273 14.012 1 92.1 ? C1 OLC 611 A 1 
HETATM 12 C C22 OLC . . . M 2 -9.208 -2.098 17.399 1 94.48 ? C22 OLC 611 A 1 
HETATM 13 O O19 OLC . . . M 2 -7.125 -2.713 13.791 1 91.98 ? O19 OLC 611 A 1 
HETATM 14 O O25 OLC . . . M 2 -9.762 -2.791 19.62 1 97.01 ? O25 OLC 611 A 1 
HETATM 15 O O23 OLC . . . M 2 -9.687 -0.775 17.433 1 112.86 ? O23 OLC 611 A 1 
HETATM 16 O O20 OLC . . . M 2 -8.479 -1.547 15.194 1 96.66 ? O20 OLC 611 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           16 
#