data_5N6L # _model_server_result.job_id dwy1eJC313okz8vr-Yo28Q _model_server_result.datetime_utc '2024-11-05 13:35:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":615}' # _entry.id 5N6L # _exptl.entry_id 5N6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 27 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N6L _cell.length_a 55.22 _cell.length_b 142.95 _cell.length_c 197.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,PA 1 1 B,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,QA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 250 n n C10 C9 OLC doub 251 n n C10 C11 OLC sing 252 n n C9 C8 OLC sing 253 n n C17 C16 OLC sing 254 z n C11 C12 OLC sing 255 n n C8 C7 OLC sing 256 n n C24 C22 OLC sing 257 n n C24 O25 OLC sing 258 n n C16 C15 OLC sing 259 n n C12 C13 OLC sing 260 n n C7 C6 OLC sing 261 n n C15 C14 OLC sing 262 n n C13 C14 OLC sing 263 n n C6 C5 OLC sing 264 n n C5 C4 OLC sing 265 n n C4 C3 OLC sing 266 n n C3 C2 OLC sing 267 n n C2 C1 OLC sing 268 n n C21 C22 OLC sing 269 n n C21 O20 OLC sing 270 n n C1 O19 OLC doub 271 n n C1 O20 OLC sing 272 n n C22 O23 OLC sing 273 n n C18 H18 OLC sing 274 n n C18 H18A OLC sing 275 n n C18 H18B OLC sing 276 n n C10 H10 OLC sing 277 n n C9 H9 OLC sing 278 n n C17 H17 OLC sing 279 n n C17 H17A OLC sing 280 n n C11 H11 OLC sing 281 n n C11 H11A OLC sing 282 n n C8 H8 OLC sing 283 n n C8 H8A OLC sing 284 n n C24 H24 OLC sing 285 n n C24 H24A OLC sing 286 n n C16 H16 OLC sing 287 n n C16 H16A OLC sing 288 n n C12 H12 OLC sing 289 n n C12 H12A OLC sing 290 n n C7 H7 OLC sing 291 n n C7 H7A OLC sing 292 n n C15 H15 OLC sing 293 n n C15 H15A OLC sing 294 n n C13 H13 OLC sing 295 n n C13 H13A OLC sing 296 n n C6 H6 OLC sing 297 n n C6 H6A OLC sing 298 n n C14 H14 OLC sing 299 n n C14 H14A OLC sing 300 n n C5 H5 OLC sing 301 n n C5 H5A OLC sing 302 n n C4 H4 OLC sing 303 n n C4 H4A OLC sing 304 n n C3 H3 OLC sing 305 n n C3 H3A OLC sing 306 n n C2 H2 OLC sing 307 n n C2 H2A OLC sing 308 n n C21 H21 OLC sing 309 n n C21 H21A OLC sing 310 n n C22 H22 OLC sing 311 n n O25 HO25 OLC sing 312 n n O23 HO23 OLC sing 313 n n # _atom_sites.entry_id 5N6L _atom_sites.fract_transf_matrix[1][1] 0.018109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLC A 1 601 1 OLC OLC . D 2 OLC A 1 602 2 OLC OLC . E 2 OLC A 1 603 5 OLC OLC . F 2 OLC A 1 604 6 OLC OLC . G 2 OLC A 1 605 7 OLC OLC . H 2 OLC A 1 606 9 OLC OLC . I 2 OLC A 1 607 11 OLC OLC . J 2 OLC A 1 608 19 OLC OLC . K 2 OLC A 1 609 22 OLC OLC . L 2 OLC A 1 610 24 OLC OLC . M 2 OLC A 1 611 26 OLC OLC . N 2 OLC A 1 612 27 OLC OLC . O 2 OLC A 1 613 30 OLC OLC . P 2 OLC A 1 614 35 OLC OLC . Q 2 OLC A 1 615 37 OLC OLC . R 2 OLC A 1 616 39 OLC OLC . S 2 OLC A 1 617 41 OLC OLC . T 2 OLC A 1 618 42 OLC OLC . U 2 OLC A 1 619 44 OLC OLC . V 3 GOL A 1 620 16 GOL GOL . W 3 GOL A 1 621 27 GOL GOL . X 3 GOL A 1 622 31 GOL GOL . Y 3 GOL A 1 623 32 GOL GOL . Z 3 GOL A 1 624 33 GOL GOL . AA 3 GOL A 1 625 39 GOL GOL . BA 3 GOL A 1 626 40 GOL GOL . CA 3 GOL A 1 627 43 GOL GOL . DA 2 OLC B 1 601 3 OLC OLC . EA 2 OLC B 1 602 4 OLC OLC . FA 2 OLC B 1 603 16 OLC OLC . GA 2 OLC B 1 604 17 OLC OLC . HA 2 OLC B 1 605 29 OLC OLC . IA 2 OLC B 1 606 36 OLC OLC . JA 2 OLC B 1 607 43 OLC OLC . KA 2 OLC B 1 608 45 OLC OLC . LA 3 GOL B 1 609 7 GOL GOL . MA 3 GOL B 1 610 11 GOL GOL . NA 3 GOL B 1 611 38 GOL GOL . OA 3 GOL B 1 612 44 GOL GOL . PA 4 HOH A 1 701 218 HOH HOH . PA 4 HOH A 2 702 202 HOH HOH . PA 4 HOH A 3 703 56 HOH HOH . PA 4 HOH A 4 704 210 HOH HOH . PA 4 HOH A 5 705 230 HOH HOH . PA 4 HOH A 6 706 220 HOH HOH . PA 4 HOH A 7 707 195 HOH HOH . PA 4 HOH A 8 708 233 HOH HOH . QA 4 HOH B 1 701 216 HOH HOH . QA 4 HOH B 2 702 212 HOH HOH . QA 4 HOH B 3 703 232 HOH HOH . QA 4 HOH B 4 704 231 HOH HOH . QA 4 HOH B 5 705 225 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . Q 2 -27.59 -9.243 6.791 1 85.48 ? C10 OLC 615 A 1 HETATM 2 C C9 OLC . . . Q 2 -27.149 -8.912 8.027 1 75.16 ? C9 OLC 615 A 1 HETATM 3 C C11 OLC . . . Q 2 -27.138 -8.435 5.583 1 88.95 ? C11 OLC 615 A 1 HETATM 4 C C8 OLC . . . Q 2 -27.584 -9.696 9.253 1 64.58 ? C8 OLC 615 A 1 HETATM 5 C C24 OLC . . . Q 2 -24.805 -6.615 21.322 1 110.86 ? C24 OLC 615 A 1 HETATM 6 C C12 OLC . . . Q 2 -27.698 -9.006 4.29 1 86 ? C12 OLC 615 A 1 HETATM 7 C C7 OLC . . . Q 2 -27.307 -8.849 10.479 1 92.27 ? C7 OLC 615 A 1 HETATM 8 C C13 OLC . . . Q 2 -27.285 -8.106 3.14 1 68.44 ? C13 OLC 615 A 1 HETATM 9 C C6 OLC . . . Q 2 -27.999 -9.392 11.713 1 88.4 ? C6 OLC 615 A 1 HETATM 10 C C5 OLC . . . Q 2 -27.744 -8.454 12.882 1 86.11 ? C5 OLC 615 A 1 HETATM 11 C C4 OLC . . . Q 2 -28.184 -9.098 14.186 1 92.52 ? C4 OLC 615 A 1 HETATM 12 C C3 OLC . . . Q 2 -27.539 -8.343 15.336 1 97.6 ? C3 OLC 615 A 1 HETATM 13 C C2 OLC . . . Q 2 -27.437 -9.186 16.602 1 101.58 ? C2 OLC 615 A 1 HETATM 14 C C21 OLC . . . Q 2 -25.34 -7.779 19.276 1 116.14 ? C21 OLC 615 A 1 HETATM 15 C C1 OLC . . . Q 2 -26.932 -8.288 17.703 1 110.85 ? C1 OLC 615 A 1 HETATM 16 C C22 OLC . . . Q 2 -24.695 -7.974 20.635 1 111.09 ? C22 OLC 615 A 1 HETATM 17 O O19 OLC . . . Q 2 -27.089 -7.095 17.561 1 119.94 ? O19 OLC 615 A 1 HETATM 18 O O25 OLC . . . Q 2 -23.839 -5.692 20.85 1 113.57 ? O25 OLC 615 A 1 HETATM 19 O O23 OLC . . . Q 2 -25.36 -8.963 21.402 1 110.75 ? O23 OLC 615 A 1 HETATM 20 O O20 OLC . . . Q 2 -26.275 -8.762 18.865 1 106.03 ? O20 OLC 615 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #