data_5N6L
#
_model_server_result.job_id            qVaoBwKkUXaWATH3cDnM8w 
_model_server_result.datetime_utc      '2024-11-05 13:46:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n6l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":621}' 
#
_entry.id    5N6L 
#
_exptl.entry_id    5N6L 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5N6L 
_cell.length_a            55.22 
_cell.length_b            142.95 
_cell.length_c            197.71 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5N6L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,PA 1 1 
B,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,QA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 LA N N 
? 3 MA N N 
? 3 NA N N 
? 3 OA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5N6L 
_atom_sites.fract_transf_matrix[1][1]    0.018109 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006995 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005058 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OLC A 1 601 1 OLC OLC . 
D 2 OLC A 1 602 2 OLC OLC . 
E 2 OLC A 1 603 5 OLC OLC . 
F 2 OLC A 1 604 6 OLC OLC . 
G 2 OLC A 1 605 7 OLC OLC . 
H 2 OLC A 1 606 9 OLC OLC . 
I 2 OLC A 1 607 11 OLC OLC . 
J 2 OLC A 1 608 19 OLC OLC . 
K 2 OLC A 1 609 22 OLC OLC . 
L 2 OLC A 1 610 24 OLC OLC . 
M 2 OLC A 1 611 26 OLC OLC . 
N 2 OLC A 1 612 27 OLC OLC . 
O 2 OLC A 1 613 30 OLC OLC . 
P 2 OLC A 1 614 35 OLC OLC . 
Q 2 OLC A 1 615 37 OLC OLC . 
R 2 OLC A 1 616 39 OLC OLC . 
S 2 OLC A 1 617 41 OLC OLC . 
T 2 OLC A 1 618 42 OLC OLC . 
U 2 OLC A 1 619 44 OLC OLC . 
V 3 GOL A 1 620 16 GOL GOL . 
W 3 GOL A 1 621 27 GOL GOL . 
X 3 GOL A 1 622 31 GOL GOL . 
Y 3 GOL A 1 623 32 GOL GOL . 
Z 3 GOL A 1 624 33 GOL GOL . 
AA 3 GOL A 1 625 39 GOL GOL . 
BA 3 GOL A 1 626 40 GOL GOL . 
CA 3 GOL A 1 627 43 GOL GOL . 
DA 2 OLC B 1 601 3 OLC OLC . 
EA 2 OLC B 1 602 4 OLC OLC . 
FA 2 OLC B 1 603 16 OLC OLC . 
GA 2 OLC B 1 604 17 OLC OLC . 
HA 2 OLC B 1 605 29 OLC OLC . 
IA 2 OLC B 1 606 36 OLC OLC . 
JA 2 OLC B 1 607 43 OLC OLC . 
KA 2 OLC B 1 608 45 OLC OLC . 
LA 3 GOL B 1 609 7 GOL GOL . 
MA 3 GOL B 1 610 11 GOL GOL . 
NA 3 GOL B 1 611 38 GOL GOL . 
OA 3 GOL B 1 612 44 GOL GOL . 
PA 4 HOH A 1 701 218 HOH HOH . 
PA 4 HOH A 2 702 202 HOH HOH . 
PA 4 HOH A 3 703 56 HOH HOH . 
PA 4 HOH A 4 704 210 HOH HOH . 
PA 4 HOH A 5 705 230 HOH HOH . 
PA 4 HOH A 6 706 220 HOH HOH . 
PA 4 HOH A 7 707 195 HOH HOH . 
PA 4 HOH A 8 708 233 HOH HOH . 
QA 4 HOH B 1 701 216 HOH HOH . 
QA 4 HOH B 2 702 212 HOH HOH . 
QA 4 HOH B 3 703 232 HOH HOH . 
QA 4 HOH B 4 704 231 HOH HOH . 
QA 4 HOH B 5 705 225 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . W 3 5.065 -26.384 12.141 1 86.54 ? C1 GOL 621 A 1 
HETATM 2 O O1 GOL . . . W 3 4.248 -26.166 13.269 1 96.29 ? O1 GOL 621 A 1 
HETATM 3 C C2 GOL . . . W 3 5.041 -25.155 11.258 1 97.1 ? C2 GOL 621 A 1 
HETATM 4 O O2 GOL . . . W 3 5.903 -24.177 11.791 1 103.46 ? O2 GOL 621 A 1 
HETATM 5 C C3 GOL . . . W 3 5.487 -25.523 9.859 1 88.88 ? C3 GOL 621 A 1 
HETATM 6 O O3 GOL . . . W 3 5.342 -24.412 9.004 1 79.13 ? O3 GOL 621 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
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