data_5N6L # _model_server_result.job_id DZl_QbF00DlOaYqoHNoUew _model_server_result.datetime_utc '2024-11-05 13:56:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":624}' # _entry.id 5N6L # _exptl.entry_id 5N6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N6L _cell.length_a 55.22 _cell.length_b 142.95 _cell.length_c 197.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,PA 1 1 B,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,QA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 LA N N ? 3 MA N N ? 3 NA N N ? 3 OA N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5N6L _atom_sites.fract_transf_matrix[1][1] 0.018109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLC A 1 601 1 OLC OLC . D 2 OLC A 1 602 2 OLC OLC . E 2 OLC A 1 603 5 OLC OLC . F 2 OLC A 1 604 6 OLC OLC . G 2 OLC A 1 605 7 OLC OLC . H 2 OLC A 1 606 9 OLC OLC . I 2 OLC A 1 607 11 OLC OLC . J 2 OLC A 1 608 19 OLC OLC . K 2 OLC A 1 609 22 OLC OLC . L 2 OLC A 1 610 24 OLC OLC . M 2 OLC A 1 611 26 OLC OLC . N 2 OLC A 1 612 27 OLC OLC . O 2 OLC A 1 613 30 OLC OLC . P 2 OLC A 1 614 35 OLC OLC . Q 2 OLC A 1 615 37 OLC OLC . R 2 OLC A 1 616 39 OLC OLC . S 2 OLC A 1 617 41 OLC OLC . T 2 OLC A 1 618 42 OLC OLC . U 2 OLC A 1 619 44 OLC OLC . V 3 GOL A 1 620 16 GOL GOL . W 3 GOL A 1 621 27 GOL GOL . X 3 GOL A 1 622 31 GOL GOL . Y 3 GOL A 1 623 32 GOL GOL . Z 3 GOL A 1 624 33 GOL GOL . AA 3 GOL A 1 625 39 GOL GOL . BA 3 GOL A 1 626 40 GOL GOL . CA 3 GOL A 1 627 43 GOL GOL . DA 2 OLC B 1 601 3 OLC OLC . EA 2 OLC B 1 602 4 OLC OLC . FA 2 OLC B 1 603 16 OLC OLC . GA 2 OLC B 1 604 17 OLC OLC . HA 2 OLC B 1 605 29 OLC OLC . IA 2 OLC B 1 606 36 OLC OLC . JA 2 OLC B 1 607 43 OLC OLC . KA 2 OLC B 1 608 45 OLC OLC . LA 3 GOL B 1 609 7 GOL GOL . MA 3 GOL B 1 610 11 GOL GOL . NA 3 GOL B 1 611 38 GOL GOL . OA 3 GOL B 1 612 44 GOL GOL . PA 4 HOH A 1 701 218 HOH HOH . PA 4 HOH A 2 702 202 HOH HOH . PA 4 HOH A 3 703 56 HOH HOH . PA 4 HOH A 4 704 210 HOH HOH . PA 4 HOH A 5 705 230 HOH HOH . PA 4 HOH A 6 706 220 HOH HOH . PA 4 HOH A 7 707 195 HOH HOH . PA 4 HOH A 8 708 233 HOH HOH . QA 4 HOH B 1 701 216 HOH HOH . QA 4 HOH B 2 702 212 HOH HOH . QA 4 HOH B 3 703 232 HOH HOH . QA 4 HOH B 4 704 231 HOH HOH . QA 4 HOH B 5 705 225 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Z 3 -12.804 -1.919 -15.881 1 107.87 ? C1 GOL 624 A 1 HETATM 2 O O1 GOL . . . Z 3 -12.994 -3.037 -16.72 1 106.59 ? O1 GOL 624 A 1 HETATM 3 C C2 GOL . . . Z 3 -12.064 -2.342 -14.631 1 110.63 ? C2 GOL 624 A 1 HETATM 4 O O2 GOL . . . Z 3 -12.386 -3.678 -14.319 1 102.89 ? O2 GOL 624 A 1 HETATM 5 C C3 GOL . . . Z 3 -12.441 -1.445 -13.471 1 113.17 ? C3 GOL 624 A 1 HETATM 6 O O3 GOL . . . Z 3 -11.96 -2.002 -12.267 1 99.86 ? O3 GOL 624 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #