data_5N6M
#
_model_server_result.job_id            4VdR68cyCj2gY8A_xJABpg 
_model_server_result.datetime_utc      '2024-11-05 13:56:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n6m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":607}' 
#
_entry.id    5N6M 
#
_exptl.entry_id    5N6M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.26 
_cell.angle_gamma         90 
_cell.entry_id            5N6M 
_cell.length_a            152.73 
_cell.length_b            39.23 
_cell.length_c            102.25 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N6M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            C 
_struct_conn.ptnr1_label_atom_id            O1 
_struct_conn.ptnr1_label_comp_id            GOL 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             GOL 
_struct_conn.ptnr1_auth_seq_id              602 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            E 
_struct_conn.ptnr2_label_atom_id            CG 
_struct_conn.ptnr2_label_comp_id            FLC 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             FLC 
_struct_conn.ptnr2_auth_seq_id              604 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.375 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 267 n n 
C10 C9 OLC doub 268 n n 
C10 C11 OLC sing 269 n n 
C9 C8 OLC sing 270 n n 
C17 C16 OLC sing 271 z n 
C11 C12 OLC sing 272 n n 
C8 C7 OLC sing 273 n n 
C24 C22 OLC sing 274 n n 
C24 O25 OLC sing 275 n n 
C16 C15 OLC sing 276 n n 
C12 C13 OLC sing 277 n n 
C7 C6 OLC sing 278 n n 
C15 C14 OLC sing 279 n n 
C13 C14 OLC sing 280 n n 
C6 C5 OLC sing 281 n n 
C5 C4 OLC sing 282 n n 
C4 C3 OLC sing 283 n n 
C3 C2 OLC sing 284 n n 
C2 C1 OLC sing 285 n n 
C21 C22 OLC sing 286 n n 
C21 O20 OLC sing 287 n n 
C1 O19 OLC doub 288 n n 
C1 O20 OLC sing 289 n n 
C22 O23 OLC sing 290 n n 
C18 H18 OLC sing 291 n n 
C18 H18A OLC sing 292 n n 
C18 H18B OLC sing 293 n n 
C10 H10 OLC sing 294 n n 
C9 H9 OLC sing 295 n n 
C17 H17 OLC sing 296 n n 
C17 H17A OLC sing 297 n n 
C11 H11 OLC sing 298 n n 
C11 H11A OLC sing 299 n n 
C8 H8 OLC sing 300 n n 
C8 H8A OLC sing 301 n n 
C24 H24 OLC sing 302 n n 
C24 H24A OLC sing 303 n n 
C16 H16 OLC sing 304 n n 
C16 H16A OLC sing 305 n n 
C12 H12 OLC sing 306 n n 
C12 H12A OLC sing 307 n n 
C7 H7 OLC sing 308 n n 
C7 H7A OLC sing 309 n n 
C15 H15 OLC sing 310 n n 
C15 H15A OLC sing 311 n n 
C13 H13 OLC sing 312 n n 
C13 H13A OLC sing 313 n n 
C6 H6 OLC sing 314 n n 
C6 H6A OLC sing 315 n n 
C14 H14 OLC sing 316 n n 
C14 H14A OLC sing 317 n n 
C5 H5 OLC sing 318 n n 
C5 H5A OLC sing 319 n n 
C4 H4 OLC sing 320 n n 
C4 H4A OLC sing 321 n n 
C3 H3 OLC sing 322 n n 
C3 H3A OLC sing 323 n n 
C2 H2 OLC sing 324 n n 
C2 H2A OLC sing 325 n n 
C21 H21 OLC sing 326 n n 
C21 H21A OLC sing 327 n n 
C22 H22 OLC sing 328 n n 
O25 HO25 OLC sing 329 n n 
O23 HO23 OLC sing 330 n n 
#
_atom_sites.entry_id                     5N6M 
_atom_sites.fract_transf_matrix[1][1]    0.006548 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00323 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025491 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010905 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 601 6 GOL GOL . 
C 2 GOL A 1 602 9 GOL GOL . 
D 2 GOL A 1 603 10 GOL GOL . 
E 3 FLC A 1 604 1 FLC FLC . 
F 4 OLC A 1 605 1 OLC OLC . 
G 4 OLC A 1 606 2 OLC OLC . 
H 4 OLC A 1 607 5 OLC OLC . 
I 4 OLC A 1 608 6 OLC OLC . 
J 4 OLC A 1 609 7 OLC OLC . 
K 5 HOH A 1 701 55 HOH HOH . 
K 5 HOH A 2 702 62 HOH HOH . 
K 5 HOH A 3 703 12 HOH HOH . 
K 5 HOH A 4 704 1 HOH HOH . 
K 5 HOH A 5 705 64 HOH HOH . 
K 5 HOH A 6 706 50 HOH HOH . 
K 5 HOH A 7 707 59 HOH HOH . 
K 5 HOH A 8 708 5 HOH HOH . 
K 5 HOH A 9 709 63 HOH HOH . 
K 5 HOH A 10 710 44 HOH HOH . 
K 5 HOH A 11 711 52 HOH HOH . 
K 5 HOH A 12 712 35 HOH HOH . 
K 5 HOH A 13 713 49 HOH HOH . 
K 5 HOH A 14 714 61 HOH HOH . 
K 5 HOH A 15 715 60 HOH HOH . 
K 5 HOH A 16 716 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C24 OLC . . . H 4 60.452 20.484 -0.336 1 80.67 ? C24 OLC 607 A 1 
HETATM 2 C C5 OLC . . . H 4 67.405 18.525 -5.922 1 62.02 ? C5 OLC 607 A 1 
HETATM 3 C C4 OLC . . . H 4 66.929 18.378 -4.486 1 66.99 ? C4 OLC 607 A 1 
HETATM 4 C C3 OLC . . . H 4 65.47 17.958 -4.54 1 66.09 ? C3 OLC 607 A 1 
HETATM 5 C C2 OLC . . . H 4 64.641 19.22 -4.359 1 69.4 ? C2 OLC 607 A 1 
HETATM 6 C C21 OLC . . . H 4 61.457 19.513 -2.459 1 77.32 ? C21 OLC 607 A 1 
HETATM 7 C C1 OLC . . . H 4 63.344 18.814 -3.681 1 74.46 ? C1 OLC 607 A 1 
HETATM 8 C C22 OLC . . . H 4 61.182 19.303 -0.972 1 83.24 ? C22 OLC 607 A 1 
HETATM 9 O O19 OLC . . . H 4 62.786 17.834 -4.035 1 71.74 ? O19 OLC 607 A 1 
HETATM 10 O O25 OLC . . . H 4 60.194 20.163 1.006 1 72.32 ? O25 OLC 607 A 1 
HETATM 11 O O23 OLC . . . H 4 60.4 18.158 -0.832 1 85.42 ? O23 OLC 607 A 1 
HETATM 12 O O20 OLC . . . H 4 62.841 19.59 -2.635 1 85.2 ? O20 OLC 607 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#