data_5N6M # _model_server_result.job_id 2c-6wb_8HfLz9aMNPJyTvQ _model_server_result.datetime_utc '2024-11-05 13:46:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n6m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":608}' # _entry.id 5N6M # _exptl.entry_id 5N6M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.26 _cell.angle_gamma 90 _cell.entry_id 5N6M _cell.length_a 152.73 _cell.length_b 39.23 _cell.length_c 102.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N6M _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id O1 _struct_conn.ptnr1_label_comp_id GOL _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GOL _struct_conn.ptnr1_auth_seq_id 602 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id CG _struct_conn.ptnr2_label_comp_id FLC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FLC _struct_conn.ptnr2_auth_seq_id 604 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.375 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 267 n n C10 C9 OLC doub 268 n n C10 C11 OLC sing 269 n n C9 C8 OLC sing 270 n n C17 C16 OLC sing 271 z n C11 C12 OLC sing 272 n n C8 C7 OLC sing 273 n n C24 C22 OLC sing 274 n n C24 O25 OLC sing 275 n n C16 C15 OLC sing 276 n n C12 C13 OLC sing 277 n n C7 C6 OLC sing 278 n n C15 C14 OLC sing 279 n n C13 C14 OLC sing 280 n n C6 C5 OLC sing 281 n n C5 C4 OLC sing 282 n n C4 C3 OLC sing 283 n n C3 C2 OLC sing 284 n n C2 C1 OLC sing 285 n n C21 C22 OLC sing 286 n n C21 O20 OLC sing 287 n n C1 O19 OLC doub 288 n n C1 O20 OLC sing 289 n n C22 O23 OLC sing 290 n n C18 H18 OLC sing 291 n n C18 H18A OLC sing 292 n n C18 H18B OLC sing 293 n n C10 H10 OLC sing 294 n n C9 H9 OLC sing 295 n n C17 H17 OLC sing 296 n n C17 H17A OLC sing 297 n n C11 H11 OLC sing 298 n n C11 H11A OLC sing 299 n n C8 H8 OLC sing 300 n n C8 H8A OLC sing 301 n n C24 H24 OLC sing 302 n n C24 H24A OLC sing 303 n n C16 H16 OLC sing 304 n n C16 H16A OLC sing 305 n n C12 H12 OLC sing 306 n n C12 H12A OLC sing 307 n n C7 H7 OLC sing 308 n n C7 H7A OLC sing 309 n n C15 H15 OLC sing 310 n n C15 H15A OLC sing 311 n n C13 H13 OLC sing 312 n n C13 H13A OLC sing 313 n n C6 H6 OLC sing 314 n n C6 H6A OLC sing 315 n n C14 H14 OLC sing 316 n n C14 H14A OLC sing 317 n n C5 H5 OLC sing 318 n n C5 H5A OLC sing 319 n n C4 H4 OLC sing 320 n n C4 H4A OLC sing 321 n n C3 H3 OLC sing 322 n n C3 H3A OLC sing 323 n n C2 H2 OLC sing 324 n n C2 H2A OLC sing 325 n n C21 H21 OLC sing 326 n n C21 H21A OLC sing 327 n n C22 H22 OLC sing 328 n n O25 HO25 OLC sing 329 n n O23 HO23 OLC sing 330 n n # _atom_sites.entry_id 5N6M _atom_sites.fract_transf_matrix[1][1] 0.006548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00323 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025491 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 601 6 GOL GOL . C 2 GOL A 1 602 9 GOL GOL . D 2 GOL A 1 603 10 GOL GOL . E 3 FLC A 1 604 1 FLC FLC . F 4 OLC A 1 605 1 OLC OLC . G 4 OLC A 1 606 2 OLC OLC . H 4 OLC A 1 607 5 OLC OLC . I 4 OLC A 1 608 6 OLC OLC . J 4 OLC A 1 609 7 OLC OLC . K 5 HOH A 1 701 55 HOH HOH . K 5 HOH A 2 702 62 HOH HOH . K 5 HOH A 3 703 12 HOH HOH . K 5 HOH A 4 704 1 HOH HOH . K 5 HOH A 5 705 64 HOH HOH . K 5 HOH A 6 706 50 HOH HOH . K 5 HOH A 7 707 59 HOH HOH . K 5 HOH A 8 708 5 HOH HOH . K 5 HOH A 9 709 63 HOH HOH . K 5 HOH A 10 710 44 HOH HOH . K 5 HOH A 11 711 52 HOH HOH . K 5 HOH A 12 712 35 HOH HOH . K 5 HOH A 13 713 49 HOH HOH . K 5 HOH A 14 714 61 HOH HOH . K 5 HOH A 15 715 60 HOH HOH . K 5 HOH A 16 716 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . I 4 82.98 32.239 32.067 1 59.22 ? C10 OLC 608 A 1 HETATM 2 C C9 OLC . . . I 4 82.161 32.112 33.092 1 67.32 ? C9 OLC 608 A 1 HETATM 3 C C11 OLC . . . I 4 83.13 33.573 31.336 1 59.88 ? C11 OLC 608 A 1 HETATM 4 C C8 OLC . . . I 4 81.327 33.289 33.597 1 63.34 ? C8 OLC 608 A 1 HETATM 5 C C24 OLC . . . I 4 71.627 40.437 36.096 1 65.98 ? C24 OLC 608 A 1 HETATM 6 C C12 OLC . . . I 4 84.459 33.595 30.581 1 62.47 ? C12 OLC 608 A 1 HETATM 7 C C7 OLC . . . I 4 80.582 32.872 34.865 1 63.84 ? C7 OLC 608 A 1 HETATM 8 C C6 OLC . . . I 4 80.275 34.106 35.713 1 72.14 ? C6 OLC 608 A 1 HETATM 9 C C5 OLC . . . I 4 79.406 35.07 34.911 1 71.38 ? C5 OLC 608 A 1 HETATM 10 C C4 OLC . . . I 4 77.976 35.033 35.445 1 60.5 ? C4 OLC 608 A 1 HETATM 11 C C3 OLC . . . I 4 77.683 36.31 36.232 1 53.97 ? C3 OLC 608 A 1 HETATM 12 C C2 OLC . . . I 4 76.7 37.169 35.438 1 63.47 ? C2 OLC 608 A 1 HETATM 13 C C21 OLC . . . I 4 73.424 38.715 36.537 1 54.96 ? C21 OLC 608 A 1 HETATM 14 C C1 OLC . . . I 4 75.478 37.542 36.278 1 62.81 ? C1 OLC 608 A 1 HETATM 15 C C22 OLC . . . I 4 72.309 39.162 35.596 1 62.99 ? C22 OLC 608 A 1 HETATM 16 O O19 OLC . . . I 4 75.342 37.107 37.372 1 69.05 ? O19 OLC 608 A 1 HETATM 17 O O25 OLC . . . I 4 70.658 40.853 35.169 1 65.01 ? O25 OLC 608 A 1 HETATM 18 O O23 OLC . . . I 4 72.887 39.397 34.344 1 63.67 ? O23 OLC 608 A 1 HETATM 19 O O20 OLC . . . I 4 74.519 38.4 35.726 1 52.87 ? O20 OLC 608 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #