data_5N6O # _model_server_result.job_id lg8sOhntv6jNXZipwPVdoQ _model_server_result.datetime_utc '2024-12-22 01:03:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n6o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5N6O # _exptl.entry_id 5N6O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N6O _cell.length_a 41.641 _cell.length_b 82.656 _cell.length_c 105.898 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N6O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 16 A THR 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc2 C O2B GDP . A GDP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc3 D MG MG . A MG 202 1_555 G O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc4 D MG MG . A MG 202 1_555 G O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc5 D MG MG . A MG 202 1_555 G O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc6 D MG MG . A MG 202 1_555 G O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc7 B OG1 THR 16 B THR 17 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc8 E O1B GDP . B GDP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc9 F MG MG . B MG 202 1_555 H O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc10 F MG MG . B MG 202 1_555 H O HOH . B HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc11 F MG MG . B MG 202 1_555 H O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc12 F MG MG . B MG 202 1_555 H O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5N6O _atom_sites.fract_transf_matrix[1][1] 0.024015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 201 1 GDP GDP . D 3 MG A 1 202 2 MG MG . E 2 GDP B 1 201 2 GDP GDP . F 3 MG B 1 202 1 MG MG . G 4 HOH A 1 301 104 HOH HOH . G 4 HOH A 2 302 99 HOH HOH . G 4 HOH A 3 303 95 HOH HOH . G 4 HOH A 4 304 9 HOH HOH . G 4 HOH A 5 305 92 HOH HOH . G 4 HOH A 6 306 20 HOH HOH . G 4 HOH A 7 307 29 HOH HOH . G 4 HOH A 8 308 88 HOH HOH . G 4 HOH A 9 309 23 HOH HOH . G 4 HOH A 10 310 3 HOH HOH . G 4 HOH A 11 311 33 HOH HOH . G 4 HOH A 12 312 101 HOH HOH . G 4 HOH A 13 313 91 HOH HOH . G 4 HOH A 14 314 94 HOH HOH . G 4 HOH A 15 315 73 HOH HOH . G 4 HOH A 16 316 97 HOH HOH . G 4 HOH A 17 317 45 HOH HOH . G 4 HOH A 18 318 52 HOH HOH . G 4 HOH A 19 319 69 HOH HOH . G 4 HOH A 20 320 39 HOH HOH . G 4 HOH A 21 321 35 HOH HOH . G 4 HOH A 22 322 103 HOH HOH . G 4 HOH A 23 323 59 HOH HOH . H 4 HOH B 1 301 98 HOH HOH . H 4 HOH B 2 302 36 HOH HOH . H 4 HOH B 3 303 6 HOH HOH . H 4 HOH B 4 304 64 HOH HOH . H 4 HOH B 5 305 17 HOH HOH . H 4 HOH B 6 306 13 HOH HOH . H 4 HOH B 7 307 22 HOH HOH . H 4 HOH B 8 308 51 HOH HOH . H 4 HOH B 9 309 5 HOH HOH . H 4 HOH B 10 310 25 HOH HOH . H 4 HOH B 11 311 46 HOH HOH . H 4 HOH B 12 312 62 HOH HOH . H 4 HOH B 13 313 8 HOH HOH . H 4 HOH B 14 314 96 HOH HOH . H 4 HOH B 15 315 50 HOH HOH . H 4 HOH B 16 316 93 HOH HOH . H 4 HOH B 17 317 1 HOH HOH . H 4 HOH B 18 318 18 HOH HOH . H 4 HOH B 19 319 43 HOH HOH . H 4 HOH B 20 320 74 HOH HOH . H 4 HOH B 21 321 102 HOH HOH . H 4 HOH B 22 322 65 HOH HOH . H 4 HOH B 23 323 100 HOH HOH . H 4 HOH B 24 324 32 HOH HOH . H 4 HOH B 25 325 10 HOH HOH . H 4 HOH B 26 326 12 HOH HOH . H 4 HOH B 27 327 67 HOH HOH . H 4 HOH B 28 328 40 HOH HOH . H 4 HOH B 29 329 84 HOH HOH . H 4 HOH B 30 330 76 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -11.915 _atom_site.Cartn_y -4.482 _atom_site.Cartn_z 16.211 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.12 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #