data_5N6T # _model_server_result.job_id wBxTNhwiXONTcMuXeIQZig _model_server_result.datetime_utc '2024-12-21 18:55:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n6t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":504}' # _entry.id 5N6T # _exptl.entry_id 5N6T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 187.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1~{R},2~{R},3~{R},4~{S},5~{R},6~{S})-3,4,5-tris(oxidanyl)-7-oxabicyclo[4.1.0]heptan-2-yl]methanediazonium' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N6T _cell.length_a 94.839 _cell.length_b 94.84 _cell.length_c 112.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N6T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1 B,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 K N N # _chem_comp.formula 'C7 H11 N2 O4 1' _chem_comp.formula_weight 187.173 _chem_comp.id 8P2 _chem_comp.mon_nstd_flag . _chem_comp.name '[(1~{R},2~{R},3~{R},4~{S},5~{R},6~{S})-3,4,5-tris(oxidanyl)-7-oxabicyclo[4.1.0]heptan-2-yl]methanediazonium' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAE CAC 8P2 sing 1 n n OAF CAK 8P2 sing 2 n n CAC CAK 8P2 sing 3 n n CAC CAD 8P2 sing 4 n n CAH N1 8P2 sing 5 n n CAH CAD 8P2 sing 6 n n CAK CAJ 8P2 sing 7 n n CAD CAA 8P2 sing 8 n n CAJ OAG 8P2 sing 9 n n CAJ CAB 8P2 sing 10 n n CAA OAI 8P2 sing 11 n n CAA CAB 8P2 sing 12 n n OAI CAB 8P2 sing 13 n n OAE H4 8P2 sing 14 n n CAC H5 8P2 sing 15 n n CAK H6 8P2 sing 16 n n OAF H7 8P2 sing 17 n n CAJ H8 8P2 sing 18 n n OAG H9 8P2 sing 19 n n CAB H10 8P2 sing 20 n n CAA H11 8P2 sing 21 n n CAD H12 8P2 sing 22 n n CAH H13 8P2 sing 23 n n CAH H14 8P2 sing 24 n n N1 N2 8P2 trip 25 n n # _atom_sites.entry_id 5N6T _atom_sites.fract_transf_matrix[1][1] 0.010544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 501 1 CL CL . D 3 EDO A 1 502 1 EDO EDO . E 3 EDO A 1 503 2 EDO EDO . F 3 EDO A 1 504 7 EDO EDO . G 4 8P2 A 1 505 3 8P2 DRG . H 3 EDO B 1 501 3 EDO EDO . I 3 EDO B 1 502 5 EDO EDO . J 3 EDO B 1 503 6 EDO EDO . K 4 8P2 B 1 504 4 8P2 DRG . L 5 HOH A 1 601 279 HOH HOH . L 5 HOH A 2 602 254 HOH HOH . L 5 HOH A 3 603 164 HOH HOH . L 5 HOH A 4 604 178 HOH HOH . L 5 HOH A 5 605 215 HOH HOH . L 5 HOH A 6 606 212 HOH HOH . L 5 HOH A 7 607 22 HOH HOH . L 5 HOH A 8 608 253 HOH HOH . L 5 HOH A 9 609 104 HOH HOH . L 5 HOH A 10 610 71 HOH HOH . L 5 HOH A 11 611 259 HOH HOH . L 5 HOH A 12 612 127 HOH HOH . L 5 HOH A 13 613 278 HOH HOH . L 5 HOH A 14 614 6 HOH HOH . L 5 HOH A 15 615 16 HOH HOH . L 5 HOH A 16 616 114 HOH HOH . L 5 HOH A 17 617 26 HOH HOH . L 5 HOH A 18 618 267 HOH HOH . L 5 HOH A 19 619 18 HOH HOH . L 5 HOH A 20 620 123 HOH HOH . L 5 HOH A 21 621 64 HOH HOH . L 5 HOH A 22 622 69 HOH HOH . L 5 HOH A 23 623 249 HOH HOH . L 5 HOH A 24 624 29 HOH HOH . L 5 HOH A 25 625 126 HOH HOH . L 5 HOH A 26 626 32 HOH HOH . L 5 HOH A 27 627 186 HOH HOH . L 5 HOH A 28 628 23 HOH HOH . L 5 HOH A 29 629 261 HOH HOH . L 5 HOH A 30 630 27 HOH HOH . L 5 HOH A 31 631 80 HOH HOH . L 5 HOH A 32 632 107 HOH HOH . L 5 HOH A 33 633 108 HOH HOH . L 5 HOH A 34 634 50 HOH HOH . L 5 HOH A 35 635 15 HOH HOH . L 5 HOH A 36 636 14 HOH HOH . L 5 HOH A 37 637 271 HOH HOH . L 5 HOH A 38 638 116 HOH HOH . L 5 HOH A 39 639 8 HOH HOH . L 5 HOH A 40 640 2 HOH HOH . L 5 HOH A 41 641 90 HOH HOH . L 5 HOH A 42 642 44 HOH HOH . L 5 HOH A 43 643 272 HOH HOH . L 5 HOH A 44 644 46 HOH HOH . L 5 HOH A 45 645 48 HOH HOH . L 5 HOH A 46 646 115 HOH HOH . L 5 HOH A 47 647 283 HOH HOH . L 5 HOH A 48 648 203 HOH HOH . L 5 HOH A 49 649 275 HOH HOH . L 5 HOH A 50 650 89 HOH HOH . L 5 HOH A 51 651 111 HOH HOH . L 5 HOH A 52 652 210 HOH HOH . L 5 HOH A 53 653 266 HOH HOH . L 5 HOH A 54 654 85 HOH HOH . L 5 HOH A 55 655 124 HOH HOH . L 5 HOH A 56 656 239 HOH HOH . L 5 HOH A 57 657 57 HOH HOH . L 5 HOH A 58 658 211 HOH HOH . L 5 HOH A 59 659 36 HOH HOH . L 5 HOH A 60 660 45 HOH HOH . L 5 HOH A 61 661 106 HOH HOH . L 5 HOH A 62 662 70 HOH HOH . L 5 HOH A 63 663 213 HOH HOH . L 5 HOH A 64 664 17 HOH HOH . L 5 HOH A 65 665 19 HOH HOH . L 5 HOH A 66 666 122 HOH HOH . L 5 HOH A 67 667 51 HOH HOH . L 5 HOH A 68 668 132 HOH HOH . L 5 HOH A 69 669 280 HOH HOH . L 5 HOH A 70 670 7 HOH HOH . L 5 HOH A 71 671 167 HOH HOH . L 5 HOH A 72 672 117 HOH HOH . L 5 HOH A 73 673 41 HOH HOH . L 5 HOH A 74 674 192 HOH HOH . L 5 HOH A 75 675 5 HOH HOH . L 5 HOH A 76 676 65 HOH HOH . L 5 HOH A 77 677 39 HOH HOH . L 5 HOH A 78 678 28 HOH HOH . L 5 HOH A 79 679 112 HOH HOH . L 5 HOH A 80 680 96 HOH HOH . L 5 HOH A 81 681 248 HOH HOH . L 5 HOH A 82 682 189 HOH HOH . L 5 HOH A 83 683 72 HOH HOH . L 5 HOH A 84 684 195 HOH HOH . L 5 HOH A 85 685 63 HOH HOH . L 5 HOH A 86 686 236 HOH HOH . L 5 HOH A 87 687 168 HOH HOH . L 5 HOH A 88 688 270 HOH HOH . L 5 HOH A 89 689 242 HOH HOH . L 5 HOH A 90 690 201 HOH HOH . L 5 HOH A 91 691 30 HOH HOH . L 5 HOH A 92 692 220 HOH HOH . L 5 HOH A 93 693 95 HOH HOH . L 5 HOH A 94 694 204 HOH HOH . L 5 HOH A 95 695 118 HOH HOH . L 5 HOH A 96 696 101 HOH HOH . L 5 HOH A 97 697 20 HOH HOH . L 5 HOH A 98 698 67 HOH HOH . L 5 HOH A 99 699 24 HOH HOH . L 5 HOH A 100 700 281 HOH HOH . L 5 HOH A 101 701 35 HOH HOH . L 5 HOH A 102 702 268 HOH HOH . L 5 HOH A 103 703 98 HOH HOH . L 5 HOH A 104 704 206 HOH HOH . L 5 HOH A 105 705 125 HOH HOH . L 5 HOH A 106 706 237 HOH HOH . L 5 HOH A 107 707 282 HOH HOH . L 5 HOH A 108 708 73 HOH HOH . L 5 HOH A 109 709 103 HOH HOH . L 5 HOH A 110 710 269 HOH HOH . L 5 HOH A 111 711 38 HOH HOH . L 5 HOH A 112 712 190 HOH HOH . L 5 HOH A 113 713 285 HOH HOH . L 5 HOH A 114 714 94 HOH HOH . L 5 HOH A 115 715 165 HOH HOH . L 5 HOH A 116 716 100 HOH HOH . L 5 HOH A 117 717 88 HOH HOH . L 5 HOH A 118 718 121 HOH HOH . L 5 HOH A 119 719 55 HOH HOH . L 5 HOH A 120 720 284 HOH HOH . L 5 HOH A 121 721 262 HOH HOH . L 5 HOH A 122 722 177 HOH HOH . L 5 HOH A 123 723 209 HOH HOH . L 5 HOH A 124 724 235 HOH HOH . L 5 HOH A 125 725 238 HOH HOH . L 5 HOH A 126 726 160 HOH HOH . L 5 HOH A 127 727 143 HOH HOH . L 5 HOH A 128 728 99 HOH HOH . L 5 HOH A 129 729 247 HOH HOH . L 5 HOH A 130 730 256 HOH HOH . L 5 HOH A 131 731 187 HOH HOH . L 5 HOH A 132 732 216 HOH HOH . L 5 HOH A 133 733 229 HOH HOH . L 5 HOH A 134 734 233 HOH HOH . L 5 HOH A 135 735 234 HOH HOH . L 5 HOH A 136 736 260 HOH HOH . L 5 HOH A 137 737 205 HOH HOH . L 5 HOH A 138 738 109 HOH HOH . L 5 HOH A 139 739 105 HOH HOH . L 5 HOH A 140 740 180 HOH HOH . L 5 HOH A 141 741 291 HOH HOH . L 5 HOH A 142 742 184 HOH HOH . M 5 HOH B 1 601 265 HOH HOH . M 5 HOH B 2 602 293 HOH HOH . M 5 HOH B 3 603 163 HOH HOH . M 5 HOH B 4 604 287 HOH HOH . M 5 HOH B 5 605 214 HOH HOH . M 5 HOH B 6 606 62 HOH HOH . M 5 HOH B 7 607 199 HOH HOH . M 5 HOH B 8 608 75 HOH HOH . M 5 HOH B 9 609 274 HOH HOH . M 5 HOH B 10 610 292 HOH HOH . M 5 HOH B 11 611 56 HOH HOH . M 5 HOH B 12 612 264 HOH HOH . M 5 HOH B 13 613 141 HOH HOH . M 5 HOH B 14 614 76 HOH HOH . M 5 HOH B 15 615 227 HOH HOH . M 5 HOH B 16 616 232 HOH HOH . M 5 HOH B 17 617 191 HOH HOH . M 5 HOH B 18 618 33 HOH HOH . M 5 HOH B 19 619 288 HOH HOH . M 5 HOH B 20 620 181 HOH HOH . M 5 HOH B 21 621 154 HOH HOH . M 5 HOH B 22 622 226 HOH HOH . M 5 HOH B 23 623 151 HOH HOH . M 5 HOH B 24 624 147 HOH HOH . M 5 HOH B 25 625 4 HOH HOH . M 5 HOH B 26 626 54 HOH HOH . M 5 HOH B 27 627 74 HOH HOH . M 5 HOH B 28 628 135 HOH HOH . M 5 HOH B 29 629 52 HOH HOH . M 5 HOH B 30 630 224 HOH HOH . M 5 HOH B 31 631 92 HOH HOH . M 5 HOH B 32 632 102 HOH HOH . M 5 HOH B 33 633 258 HOH HOH . M 5 HOH B 34 634 169 HOH HOH . M 5 HOH B 35 635 133 HOH HOH . M 5 HOH B 36 636 193 HOH HOH . M 5 HOH B 37 637 86 HOH HOH . M 5 HOH B 38 638 78 HOH HOH . M 5 HOH B 39 639 161 HOH HOH . M 5 HOH B 40 640 290 HOH HOH . M 5 HOH B 41 641 47 HOH HOH . M 5 HOH B 42 642 170 HOH HOH . M 5 HOH B 43 643 221 HOH HOH . M 5 HOH B 44 644 131 HOH HOH . M 5 HOH B 45 645 202 HOH HOH . M 5 HOH B 46 646 77 HOH HOH . M 5 HOH B 47 647 9 HOH HOH . M 5 HOH B 48 648 93 HOH HOH . M 5 HOH B 49 649 159 HOH HOH . M 5 HOH B 50 650 273 HOH HOH . M 5 HOH B 51 651 12 HOH HOH . M 5 HOH B 52 652 49 HOH HOH . M 5 HOH B 53 653 129 HOH HOH . M 5 HOH B 54 654 156 HOH HOH . M 5 HOH B 55 655 139 HOH HOH . M 5 HOH B 56 656 130 HOH HOH . M 5 HOH B 57 657 174 HOH HOH . M 5 HOH B 58 658 31 HOH HOH . M 5 HOH B 59 659 223 HOH HOH . M 5 HOH B 60 660 138 HOH HOH . M 5 HOH B 61 661 81 HOH HOH . M 5 HOH B 62 662 243 HOH HOH . M 5 HOH B 63 663 58 HOH HOH . M 5 HOH B 64 664 173 HOH HOH . M 5 HOH B 65 665 21 HOH HOH . M 5 HOH B 66 666 25 HOH HOH . M 5 HOH B 67 667 87 HOH HOH . M 5 HOH B 68 668 289 HOH HOH . M 5 HOH B 69 669 153 HOH HOH . M 5 HOH B 70 670 142 HOH HOH . M 5 HOH B 71 671 157 HOH HOH . M 5 HOH B 72 672 250 HOH HOH . M 5 HOH B 73 673 128 HOH HOH . M 5 HOH B 74 674 43 HOH HOH . M 5 HOH B 75 675 162 HOH HOH . M 5 HOH B 76 676 196 HOH HOH . M 5 HOH B 77 677 82 HOH HOH . M 5 HOH B 78 678 146 HOH HOH . M 5 HOH B 79 679 97 HOH HOH . M 5 HOH B 80 680 218 HOH HOH . M 5 HOH B 81 681 197 HOH HOH . M 5 HOH B 82 682 217 HOH HOH . M 5 HOH B 83 683 155 HOH HOH . M 5 HOH B 84 684 83 HOH HOH . M 5 HOH B 85 685 34 HOH HOH . M 5 HOH B 86 686 219 HOH HOH . M 5 HOH B 87 687 10 HOH HOH . M 5 HOH B 88 688 66 HOH HOH . M 5 HOH B 89 689 171 HOH HOH . M 5 HOH B 90 690 240 HOH HOH . M 5 HOH B 91 691 40 HOH HOH . M 5 HOH B 92 692 222 HOH HOH . M 5 HOH B 93 693 149 HOH HOH . M 5 HOH B 94 694 245 HOH HOH . M 5 HOH B 95 695 79 HOH HOH . M 5 HOH B 96 696 182 HOH HOH . M 5 HOH B 97 697 194 HOH HOH . M 5 HOH B 98 698 150 HOH HOH . M 5 HOH B 99 699 136 HOH HOH . M 5 HOH B 100 700 91 HOH HOH . M 5 HOH B 101 701 172 HOH HOH . M 5 HOH B 102 702 148 HOH HOH . M 5 HOH B 103 703 286 HOH HOH . M 5 HOH B 104 704 61 HOH HOH . M 5 HOH B 105 705 225 HOH HOH . M 5 HOH B 106 706 152 HOH HOH . M 5 HOH B 107 707 251 HOH HOH . M 5 HOH B 108 708 263 HOH HOH . M 5 HOH B 109 709 228 HOH HOH . M 5 HOH B 110 710 246 HOH HOH . M 5 HOH B 111 711 144 HOH HOH . M 5 HOH B 112 712 134 HOH HOH . M 5 HOH B 113 713 277 HOH HOH . M 5 HOH B 114 714 183 HOH HOH . M 5 HOH B 115 715 231 HOH HOH . M 5 HOH B 116 716 276 HOH HOH . M 5 HOH B 117 717 230 HOH HOH . M 5 HOH B 118 718 179 HOH HOH . M 5 HOH B 119 719 158 HOH HOH . M 5 HOH B 120 720 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 8P2 . . . K 4 43.463 1.415 -22.693 0.5 27.28 ? N1 8P2 504 B 1 HETATM 2 O OAE 8P2 . . . K 4 42.587 3.979 -19.898 1 29.5 ? OAE 8P2 504 B 1 HETATM 3 C CAC 8P2 . . . K 4 42.006 3.944 -21.225 1 31.51 ? CAC 8P2 504 B 1 HETATM 4 C CAK 8P2 . . . K 4 41.108 5.193 -21.466 1 28.95 ? CAK 8P2 504 B 1 HETATM 5 O OAF 8P2 . . . K 4 40.214 5.438 -20.392 1 29.75 ? OAF 8P2 504 B 1 HETATM 6 C CAJ 8P2 . . . K 4 40.307 5.148 -22.781 1 28.36 ? CAJ 8P2 504 B 1 HETATM 7 O OAG 8P2 . . . K 4 39.74 6.431 -23.107 1 24.19 ? OAG 8P2 504 B 1 HETATM 8 C CAB 8P2 . . . K 4 41.196 4.7 -23.912 1 30.78 ? CAB 8P2 504 B 1 HETATM 9 O OAI 8P2 . . . K 4 41.217 3.247 -23.902 1 35.93 ? OAI 8P2 504 B 1 HETATM 10 C CAA 8P2 . . . K 4 42.477 3.875 -23.717 1 33.52 ? CAA 8P2 504 B 1 HETATM 11 C CAD 8P2 . . . K 4 43.081 3.88 -22.325 1 30.92 ? CAD 8P2 504 B 1 HETATM 12 C CAH 8P2 . . . K 4 44.042 2.701 -22.311 1 30.7 ? CAH 8P2 504 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #