data_5N6U
#
_model_server_result.job_id            a-8Jdgup1VVR6fus8MY8zA 
_model_server_result.datetime_utc      '2025-08-31 02:36:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n6u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":901}' 
#
_entry.id    5N6U 
#
_exptl.entry_id    5N6U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-mannopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.52 
_cell.angle_gamma         90 
_cell.entry_id            5N6U 
_cell.length_a            139.25 
_cell.length_b            75.56 
_cell.length_c            217.88 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N6U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 410 A CYS 387 1_555 A SG CYS 448 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf2 B SG CYS 410 B CYS 387 1_555 B SG CYS 448 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf3 C SG CYS 410 C CYS 387 1_555 C SG CYS 448 C CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf4 D SG CYS 410 D CYS 387 1_555 D SG CYS 448 D CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                BMA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-mannopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-mannose;D-mannose;mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BMA sing 70 n n 
C1 O1 BMA sing 71 n n 
C1 O5 BMA sing 72 n n 
C1 H1 BMA sing 73 n n 
C2 C3 BMA sing 74 n n 
C2 O2 BMA sing 75 n n 
C2 H2 BMA sing 76 n n 
C3 C4 BMA sing 77 n n 
C3 O3 BMA sing 78 n n 
C3 H3 BMA sing 79 n n 
C4 C5 BMA sing 80 n n 
C4 O4 BMA sing 81 n n 
C4 H4 BMA sing 82 n n 
C5 C6 BMA sing 83 n n 
C5 O5 BMA sing 84 n n 
C5 H5 BMA sing 85 n n 
C6 O6 BMA sing 86 n n 
C6 H61 BMA sing 87 n n 
C6 H62 BMA sing 88 n n 
O1 HO1 BMA sing 89 n n 
O2 HO2 BMA sing 90 n n 
O3 HO3 BMA sing 91 n n 
O4 HO4 BMA sing 92 n n 
O6 HO6 BMA sing 93 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
BMA DManpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
BMA b-D-mannopyranose 'COMMON NAME' GMML 1 
BMA b-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
BMA Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5N6U 
_atom_sites.fract_transf_matrix[1][1]    0.007181 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000316 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013235 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004594 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 BMA A 1 901 3 BMA BMA . 
F 2 BMA B 1 901 2 BMA BMA . 
G 2 BMA C 1 901 4 BMA BMA . 
H 2 BMA D 1 901 1 BMA BMA . 
I 3 HOH A 1 1001 28 HOH HOH . 
I 3 HOH A 2 1002 35 HOH HOH . 
J 3 HOH B 1 1001 29 HOH HOH . 
J 3 HOH B 2 1002 12 HOH HOH . 
J 3 HOH B 3 1003 9 HOH HOH . 
J 3 HOH B 4 1004 20 HOH HOH . 
K 3 HOH C 1 1001 23 HOH HOH . 
K 3 HOH C 2 1002 14 HOH HOH . 
K 3 HOH C 3 1003 27 HOH HOH . 
K 3 HOH C 4 1004 34 HOH HOH . 
K 3 HOH C 5 1005 31 HOH HOH . 
K 3 HOH C 6 1006 18 HOH HOH . 
K 3 HOH C 7 1007 26 HOH HOH . 
K 3 HOH C 8 1008 32 HOH HOH . 
K 3 HOH C 9 1009 5 HOH HOH . 
K 3 HOH C 10 1010 17 HOH HOH . 
L 3 HOH D 1 1001 25 HOH HOH . 
L 3 HOH D 2 1002 2 HOH HOH . 
L 3 HOH D 3 1003 13 HOH HOH . 
L 3 HOH D 4 1004 1 HOH HOH . 
L 3 HOH D 5 1005 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BMA . . . H 2 -14.509 8.945 75.605 1 96.53 ? C1 BMA 901 D 1 
HETATM 2 C C2 BMA . . . H 2 -13.348 8.752 76.604 1 102.1 ? C2 BMA 901 D 1 
HETATM 3 C C3 BMA . . . H 2 -13.55 9.597 77.93 1 105.64 ? C3 BMA 901 D 1 
HETATM 4 C C4 BMA . . . H 2 -14.959 9.404 78.589 1 96.29 ? C4 BMA 901 D 1 
HETATM 5 C C5 BMA . . . H 2 -16.053 8.946 77.596 1 94.24 ? C5 BMA 901 D 1 
HETATM 6 C C6 BMA . . . H 2 -17.428 9.358 78.161 1 89.36 ? C6 BMA 901 D 1 
HETATM 7 O O2 BMA . . . H 2 -12.073 9.041 75.964 1 81.65 ? O2 BMA 901 D 1 
HETATM 8 O O3 BMA . . . H 2 -13.315 11.003 77.706 1 123.54 ? O3 BMA 901 D 1 
HETATM 9 O O4 BMA . . . H 2 -14.852 8.423 79.621 1 88.02 ? O4 BMA 901 D 1 
HETATM 10 O O5 BMA . . . H 2 -15.739 9.483 76.256 1 103 ? O5 BMA 901 D 1 
HETATM 11 O O6 BMA . . . H 2 -18.441 9.07 77.169 1 75.88 ? O6 BMA 901 D 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           457 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           11 
#