data_5N78 # _model_server_result.job_id B-VUUxgDnkRIhUKs74H-xQ _model_server_result.datetime_utc '2024-11-04 22:43:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":301}' # _entry.id 5N78 # _exptl.entry_id 5N78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.14 _cell.angle_gamma 90 _cell.entry_id 5N78 _cell.length_a 73.721 _cell.length_b 117.316 _cell.length_c 91.858 _cell.Z_PDB 10 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 K N N ? 2 P N N ? 2 T N N ? 2 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 58 A ASP 58 1_555 F MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc2 F MG MG . A MG 301 1_555 CA O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc3 B OD1 ASP 58 B ASP 58 1_555 K MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc4 K MG MG . B MG 301 1_555 GA O HOH . E HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc5 C OD1 ASP 58 C ASP 58 1_555 P MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc6 P MG MG . C MG 301 1_555 EA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc7 D OD1 ASP 58 D ASP 58 1_555 T MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc8 T MG MG . D MG 301 1_555 FA O HOH . D HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc9 T MG MG . D MG 301 1_555 FA O HOH . D HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.731 ? metalc ? metalc10 FA O HOH . D HOH 402 1_555 X MG MG . E MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc11 E OD1 ASP 58 E ASP 58 1_555 X MG MG . E MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc12 X MG MG . E MG 301 1_555 GA O HOH . E HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5N78 _atom_sites.fract_transf_matrix[1][1] 0.013565 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003166 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 MG A 1 301 2 MG MG . G 2 MG A 1 302 6 MG MG . H 3 NCO A 1 303 5 NCO NCO . I 3 NCO A 1 304 7 NCO NCO . J 3 NCO A 1 305 10 NCO NCO . K 2 MG B 1 301 4 MG MG . L 4 PG0 B 1 302 3 PG0 PG0 . M 3 NCO B 1 303 1 NCO NCO . N 3 NCO B 1 304 2 NCO NCO . O 3 NCO B 1 305 14 NCO NCO . P 2 MG C 1 301 5 MG MG . Q 4 PG0 C 1 302 1 PG0 PG0 . R 3 NCO C 1 303 9 NCO NCO . S 3 NCO C 1 304 12 NCO NCO . T 2 MG D 1 301 1 MG MG . U 3 NCO D 1 302 4 NCO NCO . V 3 NCO D 1 303 6 NCO NCO . W 3 NCO D 1 304 11 NCO NCO . X 2 MG E 1 301 3 MG MG . Y 4 PG0 E 1 302 2 PG0 PG0 . Z 3 NCO E 1 303 3 NCO NCO . AA 3 NCO E 1 304 8 NCO NCO . BA 3 NCO E 1 305 13 NCO NCO . CA 5 HOH A 1 401 42 HOH HOH . CA 5 HOH A 2 402 33 HOH HOH . CA 5 HOH A 3 403 68 HOH HOH . CA 5 HOH A 4 404 74 HOH HOH . CA 5 HOH A 5 405 71 HOH HOH . CA 5 HOH A 6 406 27 HOH HOH . CA 5 HOH A 7 407 93 HOH HOH . CA 5 HOH A 8 408 20 HOH HOH . CA 5 HOH A 9 409 41 HOH HOH . CA 5 HOH A 10 410 28 HOH HOH . CA 5 HOH A 11 411 92 HOH HOH . CA 5 HOH A 12 412 37 HOH HOH . CA 5 HOH A 13 413 64 HOH HOH . CA 5 HOH A 14 414 43 HOH HOH . CA 5 HOH A 15 415 36 HOH HOH . DA 5 HOH B 1 401 58 HOH HOH . DA 5 HOH B 2 402 55 HOH HOH . DA 5 HOH B 3 403 89 HOH HOH . DA 5 HOH B 4 404 26 HOH HOH . DA 5 HOH B 5 405 97 HOH HOH . DA 5 HOH B 6 406 47 HOH HOH . DA 5 HOH B 7 407 29 HOH HOH . DA 5 HOH B 8 408 61 HOH HOH . DA 5 HOH B 9 409 38 HOH HOH . DA 5 HOH B 10 410 21 HOH HOH . DA 5 HOH B 11 411 31 HOH HOH . DA 5 HOH B 12 412 19 HOH HOH . DA 5 HOH B 13 413 32 HOH HOH . DA 5 HOH B 14 414 24 HOH HOH . DA 5 HOH B 15 415 22 HOH HOH . DA 5 HOH B 16 416 46 HOH HOH . DA 5 HOH B 17 417 78 HOH HOH . DA 5 HOH B 18 418 14 HOH HOH . DA 5 HOH B 19 419 50 HOH HOH . DA 5 HOH B 20 420 51 HOH HOH . DA 5 HOH B 21 421 53 HOH HOH . DA 5 HOH B 22 422 79 HOH HOH . DA 5 HOH B 23 423 60 HOH HOH . EA 5 HOH C 1 401 72 HOH HOH . EA 5 HOH C 2 402 10 HOH HOH . EA 5 HOH C 3 403 94 HOH HOH . EA 5 HOH C 4 404 76 HOH HOH . EA 5 HOH C 5 405 9 HOH HOH . EA 5 HOH C 6 406 11 HOH HOH . EA 5 HOH C 7 407 35 HOH HOH . EA 5 HOH C 8 408 90 HOH HOH . EA 5 HOH C 9 409 12 HOH HOH . EA 5 HOH C 10 410 84 HOH HOH . EA 5 HOH C 11 411 69 HOH HOH . EA 5 HOH C 12 412 82 HOH HOH . EA 5 HOH C 13 413 40 HOH HOH . EA 5 HOH C 14 414 1 HOH HOH . EA 5 HOH C 15 415 87 HOH HOH . EA 5 HOH C 16 416 45 HOH HOH . EA 5 HOH C 17 417 91 HOH HOH . EA 5 HOH C 18 418 75 HOH HOH . EA 5 HOH C 19 419 62 HOH HOH . EA 5 HOH C 20 420 3 HOH HOH . EA 5 HOH C 21 421 59 HOH HOH . EA 5 HOH C 22 422 4 HOH HOH . EA 5 HOH C 23 423 73 HOH HOH . FA 5 HOH D 1 401 56 HOH HOH . FA 5 HOH D 2 402 66 HOH HOH . FA 5 HOH D 3 403 88 HOH HOH . FA 5 HOH D 4 404 5 HOH HOH . FA 5 HOH D 5 405 15 HOH HOH . FA 5 HOH D 6 406 77 HOH HOH . FA 5 HOH D 7 407 48 HOH HOH . FA 5 HOH D 8 408 8 HOH HOH . FA 5 HOH D 9 409 7 HOH HOH . FA 5 HOH D 10 410 65 HOH HOH . FA 5 HOH D 11 411 95 HOH HOH . FA 5 HOH D 12 412 18 HOH HOH . FA 5 HOH D 13 413 2 HOH HOH . FA 5 HOH D 14 414 17 HOH HOH . FA 5 HOH D 15 415 54 HOH HOH . FA 5 HOH D 16 416 16 HOH HOH . FA 5 HOH D 17 417 34 HOH HOH . FA 5 HOH D 18 418 81 HOH HOH . GA 5 HOH E 1 401 23 HOH HOH . GA 5 HOH E 2 402 86 HOH HOH . GA 5 HOH E 3 403 83 HOH HOH . GA 5 HOH E 4 404 6 HOH HOH . GA 5 HOH E 5 405 52 HOH HOH . GA 5 HOH E 6 406 67 HOH HOH . GA 5 HOH E 7 407 57 HOH HOH . GA 5 HOH E 8 408 96 HOH HOH . GA 5 HOH E 9 409 63 HOH HOH . GA 5 HOH E 10 410 30 HOH HOH . GA 5 HOH E 11 411 85 HOH HOH . GA 5 HOH E 12 412 80 HOH HOH . GA 5 HOH E 13 413 49 HOH HOH . GA 5 HOH E 14 414 70 HOH HOH . GA 5 HOH E 15 415 39 HOH HOH . GA 5 HOH E 16 416 25 HOH HOH . GA 5 HOH E 17 417 13 HOH HOH . GA 5 HOH E 18 418 44 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id T _atom_site.label_entity_id 2 _atom_site.Cartn_x -48.767 _atom_site.Cartn_y -10.052 _atom_site.Cartn_z 2.24 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 78.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #