data_5N78
#
_model_server_result.job_id            5AHe9ZZ3NGvAPxOuH7TKnQ 
_model_server_result.datetime_utc      '2024-11-21 14:09:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":304}' 
#
_entry.id    5N78 
#
_exptl.entry_id    5N78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              161.116 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COBALT HEXAMMINE(III)' 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.14 
_cell.angle_gamma         90 
_cell.entry_id            5N78 
_cell.length_a            73.721 
_cell.length_b            117.316 
_cell.length_c            91.858 
_cell.Z_PDB               10 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 R N N 
? 3 S N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 58 A ASP 58 1_555 F MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc2 F MG MG . A MG 301 1_555 CA O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? 
metalc ? metalc3 B OD1 ASP 58 B ASP 58 1_555 K MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc4 K MG MG . B MG 301 1_555 GA O HOH . E HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc5 C OD1 ASP 58 C ASP 58 1_555 P MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc6 P MG MG . C MG 301 1_555 EA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc7 D OD1 ASP 58 D ASP 58 1_555 T MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc8 T MG MG . D MG 301 1_555 FA O HOH . D HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
metalc ? metalc9 T MG MG . D MG 301 1_555 FA O HOH . D HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.731 ? 
metalc ? metalc10 FA O HOH . D HOH 402 1_555 X MG MG . E MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? 
metalc ? metalc11 E OD1 ASP 58 E ASP 58 1_555 X MG MG . E MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc12 X MG MG . E MG 301 1_555 GA O HOH . E HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
#
_chem_comp.formula           'Co H18 N6 3' 
_chem_comp.formula_weight    161.116 
_chem_comp.id                NCO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COBALT HEXAMMINE(III)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CO N1 NCO sing 237 n n 
CO N2 NCO sing 238 n n 
CO N3 NCO sing 239 n n 
CO N4 NCO sing 240 n n 
CO N5 NCO sing 241 n n 
CO N6 NCO sing 242 n n 
N1 HN11 NCO sing 243 n n 
N1 HN12 NCO sing 244 n n 
N1 HN13 NCO sing 245 n n 
N2 HN21 NCO sing 246 n n 
N2 HN22 NCO sing 247 n n 
N2 HN23 NCO sing 248 n n 
N3 HN31 NCO sing 249 n n 
N3 HN32 NCO sing 250 n n 
N3 HN33 NCO sing 251 n n 
N4 HN41 NCO sing 252 n n 
N4 HN42 NCO sing 253 n n 
N4 HN43 NCO sing 254 n n 
N5 HN51 NCO sing 255 n n 
N5 HN52 NCO sing 256 n n 
N5 HN53 NCO sing 257 n n 
N6 HN61 NCO sing 258 n n 
N6 HN62 NCO sing 259 n n 
N6 HN63 NCO sing 260 n n 
#
_atom_sites.entry_id                     5N78 
_atom_sites.fract_transf_matrix[1][1]    0.013565 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003166 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008524 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011179 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 MG A 1 301 2 MG MG . 
G 2 MG A 1 302 6 MG MG . 
H 3 NCO A 1 303 5 NCO NCO . 
I 3 NCO A 1 304 7 NCO NCO . 
J 3 NCO A 1 305 10 NCO NCO . 
K 2 MG B 1 301 4 MG MG . 
L 4 PG0 B 1 302 3 PG0 PG0 . 
M 3 NCO B 1 303 1 NCO NCO . 
N 3 NCO B 1 304 2 NCO NCO . 
O 3 NCO B 1 305 14 NCO NCO . 
P 2 MG C 1 301 5 MG MG . 
Q 4 PG0 C 1 302 1 PG0 PG0 . 
R 3 NCO C 1 303 9 NCO NCO . 
S 3 NCO C 1 304 12 NCO NCO . 
T 2 MG D 1 301 1 MG MG . 
U 3 NCO D 1 302 4 NCO NCO . 
V 3 NCO D 1 303 6 NCO NCO . 
W 3 NCO D 1 304 11 NCO NCO . 
X 2 MG E 1 301 3 MG MG . 
Y 4 PG0 E 1 302 2 PG0 PG0 . 
Z 3 NCO E 1 303 3 NCO NCO . 
AA 3 NCO E 1 304 8 NCO NCO . 
BA 3 NCO E 1 305 13 NCO NCO . 
CA 5 HOH A 1 401 42 HOH HOH . 
CA 5 HOH A 2 402 33 HOH HOH . 
CA 5 HOH A 3 403 68 HOH HOH . 
CA 5 HOH A 4 404 74 HOH HOH . 
CA 5 HOH A 5 405 71 HOH HOH . 
CA 5 HOH A 6 406 27 HOH HOH . 
CA 5 HOH A 7 407 93 HOH HOH . 
CA 5 HOH A 8 408 20 HOH HOH . 
CA 5 HOH A 9 409 41 HOH HOH . 
CA 5 HOH A 10 410 28 HOH HOH . 
CA 5 HOH A 11 411 92 HOH HOH . 
CA 5 HOH A 12 412 37 HOH HOH . 
CA 5 HOH A 13 413 64 HOH HOH . 
CA 5 HOH A 14 414 43 HOH HOH . 
CA 5 HOH A 15 415 36 HOH HOH . 
DA 5 HOH B 1 401 58 HOH HOH . 
DA 5 HOH B 2 402 55 HOH HOH . 
DA 5 HOH B 3 403 89 HOH HOH . 
DA 5 HOH B 4 404 26 HOH HOH . 
DA 5 HOH B 5 405 97 HOH HOH . 
DA 5 HOH B 6 406 47 HOH HOH . 
DA 5 HOH B 7 407 29 HOH HOH . 
DA 5 HOH B 8 408 61 HOH HOH . 
DA 5 HOH B 9 409 38 HOH HOH . 
DA 5 HOH B 10 410 21 HOH HOH . 
DA 5 HOH B 11 411 31 HOH HOH . 
DA 5 HOH B 12 412 19 HOH HOH . 
DA 5 HOH B 13 413 32 HOH HOH . 
DA 5 HOH B 14 414 24 HOH HOH . 
DA 5 HOH B 15 415 22 HOH HOH . 
DA 5 HOH B 16 416 46 HOH HOH . 
DA 5 HOH B 17 417 78 HOH HOH . 
DA 5 HOH B 18 418 14 HOH HOH . 
DA 5 HOH B 19 419 50 HOH HOH . 
DA 5 HOH B 20 420 51 HOH HOH . 
DA 5 HOH B 21 421 53 HOH HOH . 
DA 5 HOH B 22 422 79 HOH HOH . 
DA 5 HOH B 23 423 60 HOH HOH . 
EA 5 HOH C 1 401 72 HOH HOH . 
EA 5 HOH C 2 402 10 HOH HOH . 
EA 5 HOH C 3 403 94 HOH HOH . 
EA 5 HOH C 4 404 76 HOH HOH . 
EA 5 HOH C 5 405 9 HOH HOH . 
EA 5 HOH C 6 406 11 HOH HOH . 
EA 5 HOH C 7 407 35 HOH HOH . 
EA 5 HOH C 8 408 90 HOH HOH . 
EA 5 HOH C 9 409 12 HOH HOH . 
EA 5 HOH C 10 410 84 HOH HOH . 
EA 5 HOH C 11 411 69 HOH HOH . 
EA 5 HOH C 12 412 82 HOH HOH . 
EA 5 HOH C 13 413 40 HOH HOH . 
EA 5 HOH C 14 414 1 HOH HOH . 
EA 5 HOH C 15 415 87 HOH HOH . 
EA 5 HOH C 16 416 45 HOH HOH . 
EA 5 HOH C 17 417 91 HOH HOH . 
EA 5 HOH C 18 418 75 HOH HOH . 
EA 5 HOH C 19 419 62 HOH HOH . 
EA 5 HOH C 20 420 3 HOH HOH . 
EA 5 HOH C 21 421 59 HOH HOH . 
EA 5 HOH C 22 422 4 HOH HOH . 
EA 5 HOH C 23 423 73 HOH HOH . 
FA 5 HOH D 1 401 56 HOH HOH . 
FA 5 HOH D 2 402 66 HOH HOH . 
FA 5 HOH D 3 403 88 HOH HOH . 
FA 5 HOH D 4 404 5 HOH HOH . 
FA 5 HOH D 5 405 15 HOH HOH . 
FA 5 HOH D 6 406 77 HOH HOH . 
FA 5 HOH D 7 407 48 HOH HOH . 
FA 5 HOH D 8 408 8 HOH HOH . 
FA 5 HOH D 9 409 7 HOH HOH . 
FA 5 HOH D 10 410 65 HOH HOH . 
FA 5 HOH D 11 411 95 HOH HOH . 
FA 5 HOH D 12 412 18 HOH HOH . 
FA 5 HOH D 13 413 2 HOH HOH . 
FA 5 HOH D 14 414 17 HOH HOH . 
FA 5 HOH D 15 415 54 HOH HOH . 
FA 5 HOH D 16 416 16 HOH HOH . 
FA 5 HOH D 17 417 34 HOH HOH . 
FA 5 HOH D 18 418 81 HOH HOH . 
GA 5 HOH E 1 401 23 HOH HOH . 
GA 5 HOH E 2 402 86 HOH HOH . 
GA 5 HOH E 3 403 83 HOH HOH . 
GA 5 HOH E 4 404 6 HOH HOH . 
GA 5 HOH E 5 405 52 HOH HOH . 
GA 5 HOH E 6 406 67 HOH HOH . 
GA 5 HOH E 7 407 57 HOH HOH . 
GA 5 HOH E 8 408 96 HOH HOH . 
GA 5 HOH E 9 409 63 HOH HOH . 
GA 5 HOH E 10 410 30 HOH HOH . 
GA 5 HOH E 11 411 85 HOH HOH . 
GA 5 HOH E 12 412 80 HOH HOH . 
GA 5 HOH E 13 413 49 HOH HOH . 
GA 5 HOH E 14 414 70 HOH HOH . 
GA 5 HOH E 15 415 39 HOH HOH . 
GA 5 HOH E 16 416 25 HOH HOH . 
GA 5 HOH E 17 417 13 HOH HOH . 
GA 5 HOH E 18 418 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CO CO NCO . . . AA 3 -43.421 40.71 32.157 1 148.03 ? CO NCO 304 E 1 
HETATM 2 N N1 NCO . . . AA 3 -43.023 40.302 34.067 1 138.83 ? N1 NCO 304 E 1 
HETATM 3 N N2 NCO . . . AA 3 -43.864 41.175 30.274 1 142.1 ? N2 NCO 304 E 1 
HETATM 4 N N3 NCO . . . AA 3 -44.519 39.073 31.978 1 151.75 ? N3 NCO 304 E 1 
HETATM 5 N N4 NCO . . . AA 3 -41.766 39.769 31.617 1 140.65 ? N4 NCO 304 E 1 
HETATM 6 N N5 NCO . . . AA 3 -42.389 42.395 32.387 1 150.85 ? N5 NCO 304 E 1 
HETATM 7 N N6 NCO . . . AA 3 -45.041 41.756 32.666 1 158.54 ? N6 NCO 304 E 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#