data_5N7G # _model_server_result.job_id iK0nzsi6O9Gm1FT6T16pMg _model_server_result.datetime_utc '2024-10-18 15:29:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n7g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":903}' # _entry.id 5N7G # _exptl.entry_id 5N7G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.69 _cell.angle_gamma 90 _cell.entry_id 5N7G _cell.length_a 194.93 _cell.length_b 60.23 _cell.length_c 99.35 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N7G _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L 1 1 B,M,N,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C PRO 3 C PRO 731 1_555 C N SEP 4 C SEP 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 C C SEP 4 C SEP 732 1_555 C N THR 5 C THR 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OD1 ASP 73 A ASP 524 1_555 K CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc2 A O GLY 138 A GLY 589 1_555 G CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc3 A O VAL 139 A VAL 590 1_555 G CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc4 A OE1 GLU 141 A GLU 592 1_555 G CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? metalc ? metalc5 A O GLY 290 A GLY 741 1_555 H CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc6 A O ARG 293 A ARG 744 1_555 H CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc7 A O GLY 295 A GLY 746 1_555 H CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc8 A OG SER 322 A SER 773 1_555 I CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc9 A OG SER 322 A SER 773 1_555 L CA CA . A CA 909 4_9414 ? ? ? ? ? ? ? ? ? ? ? ? 40.901 ? metalc ? metalc10 A OE1 GLU 335 A GLU 786 1_555 H CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc11 A OE2 GLU 335 A GLU 786 1_555 H CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc12 A O MET 366 A MET 817 1_555 L CA CA . A CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc13 A O GLY 368 A GLY 819 1_555 I CA CA . A CA 906 4_9514 ? ? ? ? ? ? ? ? ? ? ? ? 40.492 ? metalc ? metalc14 A O GLY 368 A GLY 819 1_555 L CA CA . A CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc15 A O GLY 370 A GLY 821 1_555 I CA CA . A CA 906 4_9514 ? ? ? ? ? ? ? ? ? ? ? ? 41.925 ? metalc ? metalc16 A O GLY 370 A GLY 821 1_555 L CA CA . A CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc17 A OD1 ASP 410 A ASP 861 1_555 I CA CA . A CA 906 4_9514 ? ? ? ? ? ? ? ? ? ? ? ? 41.844 ? metalc ? metalc18 A OD1 ASP 410 A ASP 861 1_555 L CA CA . A CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc19 A OD2 ASP 410 A ASP 861 1_555 L CA CA . A CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc20 B O VAL 139 B VAL 590 1_555 P CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc21 B OG SER 322 B SER 773 1_555 Q CA CA . B CA 905 4_9513 ? ? ? ? ? ? ? ? ? ? ? ? 41.353 ? metalc ? metalc22 B OE2 GLU 335 B GLU 786 1_555 O CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc23 B O MET 366 B MET 817 1_555 Q CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc24 B O GLY 368 B GLY 819 1_555 Q CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc25 B O GLY 370 B GLY 821 1_555 Q CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc26 B OD1 ASP 410 B ASP 861 1_555 Q CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc27 B OD2 ASP 410 B ASP 861 1_555 Q CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5N7G _atom_sites.fract_transf_matrix[1][1] 0.00513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000784 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL A 1 901 1 GOL GOL . E 3 GOL A 1 902 2 GOL GOL . F 3 GOL A 1 903 5 GOL GOL . G 4 CA A 1 904 1 CA CA . H 4 CA A 1 905 2 CA CA . I 4 CA A 1 906 3 CA CA . J 4 CA A 1 907 10 CA CA . K 4 CA A 1 908 11 CA CA . L 4 CA A 1 909 12 CA CA . M 3 GOL B 1 901 3 GOL GOL . N 3 GOL B 1 902 4 GOL GOL . O 4 CA B 1 903 4 CA CA . P 4 CA B 1 904 6 CA CA . Q 4 CA B 1 905 8 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 350.457 -27.064 429.284 1 26.3 ? C1 GOL 903 A 1 HETATM 2 O O1 GOL . . . F 3 350.756 -26.702 427.953 1 27.45 ? O1 GOL 903 A 1 HETATM 3 C C2 GOL . . . F 3 350.901 -25.952 430.226 1 34.08 ? C2 GOL 903 A 1 HETATM 4 O O2 GOL . . . F 3 349.83 -25.581 431.066 1 27.76 ? O2 GOL 903 A 1 HETATM 5 C C3 GOL . . . F 3 352.073 -26.435 431.073 1 32.94 ? C3 GOL 903 A 1 HETATM 6 O O3 GOL . . . F 3 352.387 -25.46 432.043 1 29.89 ? O3 GOL 903 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #