data_5N7L # _model_server_result.job_id k_F3h2YFglk62F-kWb9IuA _model_server_result.datetime_utc '2024-10-10 08:24:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n7l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5N7L # _exptl.entry_id 5N7L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTAMIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N7L _cell.length_a 100.439 _cell.length_b 100.439 _cell.length_c 98.848 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 -x+1/2,y,-z-1/4 -1 0 0 0 1 0 0 0 -1 50.2195 0 -24.712 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GLU _chem_comp.mon_nstd_flag y _chem_comp.name 'GLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLU sing 73 n n N H GLU sing 74 n n N H2 GLU sing 75 n n CA C GLU sing 76 n n CA CB GLU sing 77 n n CA HA GLU sing 78 n n C O GLU doub 79 n n C OXT GLU sing 80 n n CB CG GLU sing 81 n n CB HB2 GLU sing 82 n n CB HB3 GLU sing 83 n n CG CD GLU sing 84 n n CG HG2 GLU sing 85 n n CG HG3 GLU sing 86 n n CD OE1 GLU doub 87 n n CD OE2 GLU sing 88 n n OE2 HE2 GLU sing 89 n n OXT HXT GLU sing 90 n n # _atom_sites.entry_id 5N7L _atom_sites.fract_transf_matrix[1][1] 0.009956 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BR A 1 401 1 BR BR . C 2 BR A 1 402 2 BR BR . D 2 BR A 1 403 3 BR BR . E 3 GLU A 1 404 1 GLU GLU . F 3 GLU A 1 405 2 GLU GLU . G 3 GLU A 1 406 3 GLU GLU . H 4 HOH A 1 501 7 HOH HOH . H 4 HOH A 2 502 11 HOH HOH . H 4 HOH A 3 503 5 HOH HOH . H 4 HOH A 4 504 10 HOH HOH . H 4 HOH A 5 505 12 HOH HOH . H 4 HOH A 6 506 4 HOH HOH . H 4 HOH A 7 507 2 HOH HOH . H 4 HOH A 8 508 8 HOH HOH . H 4 HOH A 9 509 3 HOH HOH . H 4 HOH A 10 510 1 HOH HOH . H 4 HOH A 11 511 6 HOH HOH . H 4 HOH A 12 512 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA GLU . . . F 3 3.258 -9.253 -15.12 1 89 ? CA GLU 405 A 1 HETATM 2 C CB GLU . . . F 3 3.638 -8.817 -13.704 1 90.07 ? CB GLU 405 A 1 HETATM 3 C CG GLU . . . F 3 4.053 -9.958 -12.787 1 78.7 ? CG GLU 405 A 1 HETATM 4 C CD GLU . . . F 3 4.599 -9.47 -11.457 1 86.47 ? CD GLU 405 A 1 HETATM 5 O OE1 GLU . . . F 3 5.785 -9.729 -11.167 1 82.94 ? OE1 GLU 405 A 1 HETATM 6 O OE2 GLU . . . F 3 3.842 -8.825 -10.7 1 97.88 -1 OE2 GLU 405 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #