data_5N84 # _model_server_result.job_id 5IS9hnK8hkZO5PpHRKBtCg _model_server_result.datetime_utc '2025-01-10 15:47:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":905}' # _entry.id 5N84 # _exptl.entry_id 5N84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N84 _cell.length_a 71.178 _cell.length_b 112.199 _cell.length_c 115.983 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 76 A GLU 571 1_555 E NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc2 A O PRO 126 A PRO 621 1_555 C NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc3 A OD2 ASP 169 A ASP 664 1_555 E NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 A O ASN 193 A ASN 688 1_555 F NA NA . A NA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc5 A O ASN 193 A ASN 688 1_555 G NA NA . A NA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc6 A OD1 ASN 193 A ASN 688 1_555 G NA NA . A NA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.178 ? metalc ? metalc7 A O MET 195 A MET 690 1_555 F NA NA . A NA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? metalc ? metalc8 A OG1 THR 237 A THR 732 1_555 G NA NA . A NA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc9 A OE1 GLU 266 A GLU 761 1_555 C NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc10 A O LEU 290 A LEU 785 1_555 D NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc11 A OH TYR 295 A TYR 790 1_555 C NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc12 E NA NA . A NA 904 1_555 I O HOH . A HOH 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? metalc ? metalc13 E NA NA . A NA 904 1_555 I O HOH . A HOH 1023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5N84 _atom_sites.fract_transf_matrix[1][1] 0.014049 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8Q5 A 1 901 795 8Q5 N61 . C 3 NA A 1 902 799 NA NA . D 3 NA A 1 903 800 NA NA . E 3 NA A 1 904 801 NA NA . F 3 NA A 1 905 796 NA NA . G 3 NA A 1 906 798 NA NA . H 4 PG0 A 1 907 797 PG0 7PE . I 5 HOH A 1 1001 57 HOH HOH . I 5 HOH A 2 1002 124 HOH HOH . I 5 HOH A 3 1003 89 HOH HOH . I 5 HOH A 4 1004 41 HOH HOH . I 5 HOH A 5 1005 35 HOH HOH . I 5 HOH A 6 1006 75 HOH HOH . I 5 HOH A 7 1007 15 HOH HOH . I 5 HOH A 8 1008 5 HOH HOH . I 5 HOH A 9 1009 10 HOH HOH . I 5 HOH A 10 1010 93 HOH HOH . I 5 HOH A 11 1011 107 HOH HOH . I 5 HOH A 12 1012 2 HOH HOH . I 5 HOH A 13 1013 78 HOH HOH . I 5 HOH A 14 1014 44 HOH HOH . I 5 HOH A 15 1015 14 HOH HOH . I 5 HOH A 16 1016 30 HOH HOH . I 5 HOH A 17 1017 81 HOH HOH . I 5 HOH A 18 1018 4 HOH HOH . I 5 HOH A 19 1019 17 HOH HOH . I 5 HOH A 20 1020 18 HOH HOH . I 5 HOH A 21 1021 28 HOH HOH . I 5 HOH A 22 1022 74 HOH HOH . I 5 HOH A 23 1023 3 HOH HOH . I 5 HOH A 24 1024 48 HOH HOH . I 5 HOH A 25 1025 1 HOH HOH . I 5 HOH A 26 1026 99 HOH HOH . I 5 HOH A 27 1027 121 HOH HOH . I 5 HOH A 28 1028 32 HOH HOH . I 5 HOH A 29 1029 77 HOH HOH . I 5 HOH A 30 1030 42 HOH HOH . I 5 HOH A 31 1031 79 HOH HOH . I 5 HOH A 32 1032 55 HOH HOH . I 5 HOH A 33 1033 94 HOH HOH . I 5 HOH A 34 1034 21 HOH HOH . I 5 HOH A 35 1035 25 HOH HOH . I 5 HOH A 36 1036 62 HOH HOH . I 5 HOH A 37 1037 86 HOH HOH . I 5 HOH A 38 1038 53 HOH HOH . I 5 HOH A 39 1039 65 HOH HOH . I 5 HOH A 40 1040 12 HOH HOH . I 5 HOH A 41 1041 80 HOH HOH . I 5 HOH A 42 1042 51 HOH HOH . I 5 HOH A 43 1043 16 HOH HOH . I 5 HOH A 44 1044 73 HOH HOH . I 5 HOH A 45 1045 6 HOH HOH . I 5 HOH A 46 1046 71 HOH HOH . I 5 HOH A 47 1047 72 HOH HOH . I 5 HOH A 48 1048 33 HOH HOH . I 5 HOH A 49 1049 13 HOH HOH . I 5 HOH A 50 1050 61 HOH HOH . I 5 HOH A 51 1051 69 HOH HOH . I 5 HOH A 52 1052 92 HOH HOH . I 5 HOH A 53 1053 24 HOH HOH . I 5 HOH A 54 1054 101 HOH HOH . I 5 HOH A 55 1055 70 HOH HOH . I 5 HOH A 56 1056 97 HOH HOH . I 5 HOH A 57 1057 87 HOH HOH . I 5 HOH A 58 1058 100 HOH HOH . I 5 HOH A 59 1059 88 HOH HOH . I 5 HOH A 60 1060 52 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 26.46 _atom_site.Cartn_y 24.162 _atom_site.Cartn_z 51.457 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 89.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 905 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #