data_5N84 # _model_server_result.job_id s4b5rFBlovZxzfXZUf5CMw _model_server_result.datetime_utc '2025-01-10 15:57:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":907}' # _entry.id 5N84 # _exptl.entry_id 5N84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.147 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2-METHOXYETHOXY)ETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N84 _cell.length_a 71.178 _cell.length_b 112.199 _cell.length_c 115.983 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 76 A GLU 571 1_555 E NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc2 A O PRO 126 A PRO 621 1_555 C NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc3 A OD2 ASP 169 A ASP 664 1_555 E NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 A O ASN 193 A ASN 688 1_555 F NA NA . A NA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc5 A O ASN 193 A ASN 688 1_555 G NA NA . A NA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc6 A OD1 ASN 193 A ASN 688 1_555 G NA NA . A NA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.178 ? metalc ? metalc7 A O MET 195 A MET 690 1_555 F NA NA . A NA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? metalc ? metalc8 A OG1 THR 237 A THR 732 1_555 G NA NA . A NA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc9 A OE1 GLU 266 A GLU 761 1_555 C NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc10 A O LEU 290 A LEU 785 1_555 D NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc11 A OH TYR 295 A TYR 790 1_555 C NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc12 E NA NA . A NA 904 1_555 I O HOH . A HOH 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? metalc ? metalc13 E NA NA . A NA 904 1_555 I O HOH . A HOH 1023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? # _chem_comp.formula 'C5 H12 O3' _chem_comp.formula_weight 120.147 _chem_comp.id PG0 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2-METHOXYETHOXY)ETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PEG 6000' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O2 PG0 sing 289 n n C5 H51 PG0 sing 290 n n C5 H52 PG0 sing 291 n n C5 H53 PG0 sing 292 n n O2 C4 PG0 sing 293 n n C4 C3 PG0 sing 294 n n C4 H41 PG0 sing 295 n n C4 H42 PG0 sing 296 n n C3 O1 PG0 sing 297 n n C3 H31 PG0 sing 298 n n C3 H32 PG0 sing 299 n n O1 C2 PG0 sing 300 n n C2 C1 PG0 sing 301 n n C2 H21 PG0 sing 302 n n C2 H22 PG0 sing 303 n n C1 OTT PG0 sing 304 n n C1 H11 PG0 sing 305 n n C1 H12 PG0 sing 306 n n OTT HTT PG0 sing 307 n n # _atom_sites.entry_id 5N84 _atom_sites.fract_transf_matrix[1][1] 0.014049 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8Q5 A 1 901 795 8Q5 N61 . C 3 NA A 1 902 799 NA NA . D 3 NA A 1 903 800 NA NA . E 3 NA A 1 904 801 NA NA . F 3 NA A 1 905 796 NA NA . G 3 NA A 1 906 798 NA NA . H 4 PG0 A 1 907 797 PG0 7PE . I 5 HOH A 1 1001 57 HOH HOH . I 5 HOH A 2 1002 124 HOH HOH . I 5 HOH A 3 1003 89 HOH HOH . I 5 HOH A 4 1004 41 HOH HOH . I 5 HOH A 5 1005 35 HOH HOH . I 5 HOH A 6 1006 75 HOH HOH . I 5 HOH A 7 1007 15 HOH HOH . I 5 HOH A 8 1008 5 HOH HOH . I 5 HOH A 9 1009 10 HOH HOH . I 5 HOH A 10 1010 93 HOH HOH . I 5 HOH A 11 1011 107 HOH HOH . I 5 HOH A 12 1012 2 HOH HOH . I 5 HOH A 13 1013 78 HOH HOH . I 5 HOH A 14 1014 44 HOH HOH . I 5 HOH A 15 1015 14 HOH HOH . I 5 HOH A 16 1016 30 HOH HOH . I 5 HOH A 17 1017 81 HOH HOH . I 5 HOH A 18 1018 4 HOH HOH . I 5 HOH A 19 1019 17 HOH HOH . I 5 HOH A 20 1020 18 HOH HOH . I 5 HOH A 21 1021 28 HOH HOH . I 5 HOH A 22 1022 74 HOH HOH . I 5 HOH A 23 1023 3 HOH HOH . I 5 HOH A 24 1024 48 HOH HOH . I 5 HOH A 25 1025 1 HOH HOH . I 5 HOH A 26 1026 99 HOH HOH . I 5 HOH A 27 1027 121 HOH HOH . I 5 HOH A 28 1028 32 HOH HOH . I 5 HOH A 29 1029 77 HOH HOH . I 5 HOH A 30 1030 42 HOH HOH . I 5 HOH A 31 1031 79 HOH HOH . I 5 HOH A 32 1032 55 HOH HOH . I 5 HOH A 33 1033 94 HOH HOH . I 5 HOH A 34 1034 21 HOH HOH . I 5 HOH A 35 1035 25 HOH HOH . I 5 HOH A 36 1036 62 HOH HOH . I 5 HOH A 37 1037 86 HOH HOH . I 5 HOH A 38 1038 53 HOH HOH . I 5 HOH A 39 1039 65 HOH HOH . I 5 HOH A 40 1040 12 HOH HOH . I 5 HOH A 41 1041 80 HOH HOH . I 5 HOH A 42 1042 51 HOH HOH . I 5 HOH A 43 1043 16 HOH HOH . I 5 HOH A 44 1044 73 HOH HOH . I 5 HOH A 45 1045 6 HOH HOH . I 5 HOH A 46 1046 71 HOH HOH . I 5 HOH A 47 1047 72 HOH HOH . I 5 HOH A 48 1048 33 HOH HOH . I 5 HOH A 49 1049 13 HOH HOH . I 5 HOH A 50 1050 61 HOH HOH . I 5 HOH A 51 1051 69 HOH HOH . I 5 HOH A 52 1052 92 HOH HOH . I 5 HOH A 53 1053 24 HOH HOH . I 5 HOH A 54 1054 101 HOH HOH . I 5 HOH A 55 1055 70 HOH HOH . I 5 HOH A 56 1056 97 HOH HOH . I 5 HOH A 57 1057 87 HOH HOH . I 5 HOH A 58 1058 100 HOH HOH . I 5 HOH A 59 1059 88 HOH HOH . I 5 HOH A 60 1060 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 PG0 . . . H 4 43.271 35.318 35.867 1 54.52 ? C5 PG0 907 A 1 HETATM 2 O O2 PG0 . . . H 4 44.545 34.701 35.739 1 61.93 ? O2 PG0 907 A 1 HETATM 3 C C4 PG0 . . . H 4 45.589 35.423 36.374 1 66.47 ? C4 PG0 907 A 1 HETATM 4 C C3 PG0 . . . H 4 46.025 34.501 37.494 1 61.57 ? C3 PG0 907 A 1 HETATM 5 O O1 PG0 . . . H 4 45.317 34.972 38.594 1 71.66 ? O1 PG0 907 A 1 HETATM 6 C C2 PG0 . . . H 4 46.1 34.992 39.794 1 63.31 ? C2 PG0 907 A 1 HETATM 7 C C1 PG0 . . . H 4 45.177 34.984 41.019 1 65.43 ? C1 PG0 907 A 1 HETATM 8 O OTT PG0 . . . H 4 43.864 35.456 40.718 1 65.01 ? OTT PG0 907 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #