data_5N87
#
_model_server_result.job_id            UgeAWbIivMMKjHsAHR-PCg 
_model_server_result.datetime_utc      '2025-01-10 19:55:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n87 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":902}' 
#
_entry.id    5N87 
#
_exptl.entry_id    5N87 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.253 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,5,8,11-TETRAOXATRIDECANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5N87 
_cell.length_a            71.09 
_cell.length_b            112.23 
_cell.length_c            113.98 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N87 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 190 A GLY 685 1_555 A N TPO 191 A TPO 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C TPO 191 A TPO 686 1_555 A N VAL 192 A VAL 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
metalc ? metalc1 A OE1 GLU 76 A GLU 571 1_555 D NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? 
metalc ? metalc2 A OD2 ASP 169 A ASP 664 1_555 D NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc3 D NA NA . A NA 903 1_555 E O HOH . A HOH 1036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc4 D NA NA . A NA 903 1_555 E O HOH . A HOH 1048 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
metalc ? metalc5 D NA NA . A NA 903 1_555 E O HOH . A HOH 1066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? 
#
_chem_comp.formula           'C9 H20 O4' 
_chem_comp.formula_weight    192.253 
_chem_comp.id                PGF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,5,8,11-TETRAOXATRIDECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C7 C8 PGF sing 323 n n 
C7 H71 PGF sing 324 n n 
C7 H72 PGF sing 325 n n 
C7 H73 PGF sing 326 n n 
C8 O5 PGF sing 327 n n 
C8 H81 PGF sing 328 n n 
C8 H82 PGF sing 329 n n 
O5 C9 PGF sing 330 n n 
C9 C10 PGF sing 331 n n 
C9 H91 PGF sing 332 n n 
C9 H92 PGF sing 333 n n 
C10 O6 PGF sing 334 n n 
C10 H101 PGF sing 335 n n 
C10 H102 PGF sing 336 n n 
O6 C11 PGF sing 337 n n 
C11 C12 PGF sing 338 n n 
C11 H111 PGF sing 339 n n 
C11 H112 PGF sing 340 n n 
C12 O7 PGF sing 341 n n 
C12 H121 PGF sing 342 n n 
C12 H122 PGF sing 343 n n 
O7 C13 PGF sing 344 n n 
C13 C14 PGF sing 345 n n 
C13 H131 PGF sing 346 n n 
C13 H132 PGF sing 347 n n 
C14 O8 PGF sing 348 n n 
C14 H141 PGF sing 349 n n 
C14 H142 PGF sing 350 n n 
O8 C15 PGF sing 351 n n 
C15 H151 PGF sing 352 n n 
C15 H152 PGF sing 353 n n 
C15 H153 PGF sing 354 n n 
#
_atom_sites.entry_id                     5N87 
_atom_sites.fract_transf_matrix[1][1]    0.014067 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00891 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008773 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 N66 A 1 901 795 N66 N66 . 
C 3 PGF A 1 902 797 PGF 7XQ . 
D 4 NA A 1 903 798 NA NA . 
E 5 HOH A 1 1001 118 HOH HOH . 
E 5 HOH A 2 1002 40 HOH HOH . 
E 5 HOH A 3 1003 31 HOH HOH . 
E 5 HOH A 4 1004 70 HOH HOH . 
E 5 HOH A 5 1005 82 HOH HOH . 
E 5 HOH A 6 1006 91 HOH HOH . 
E 5 HOH A 7 1007 17 HOH HOH . 
E 5 HOH A 8 1008 88 HOH HOH . 
E 5 HOH A 9 1009 12 HOH HOH . 
E 5 HOH A 10 1010 16 HOH HOH . 
E 5 HOH A 11 1011 71 HOH HOH . 
E 5 HOH A 12 1012 51 HOH HOH . 
E 5 HOH A 13 1013 87 HOH HOH . 
E 5 HOH A 14 1014 2 HOH HOH . 
E 5 HOH A 15 1015 113 HOH HOH . 
E 5 HOH A 16 1016 45 HOH HOH . 
E 5 HOH A 17 1017 27 HOH HOH . 
E 5 HOH A 18 1018 5 HOH HOH . 
E 5 HOH A 19 1019 55 HOH HOH . 
E 5 HOH A 20 1020 43 HOH HOH . 
E 5 HOH A 21 1021 13 HOH HOH . 
E 5 HOH A 22 1022 100 HOH HOH . 
E 5 HOH A 23 1023 14 HOH HOH . 
E 5 HOH A 24 1024 117 HOH HOH . 
E 5 HOH A 25 1025 104 HOH HOH . 
E 5 HOH A 26 1026 39 HOH HOH . 
E 5 HOH A 27 1027 63 HOH HOH . 
E 5 HOH A 28 1028 21 HOH HOH . 
E 5 HOH A 29 1029 3 HOH HOH . 
E 5 HOH A 30 1030 41 HOH HOH . 
E 5 HOH A 31 1031 26 HOH HOH . 
E 5 HOH A 32 1032 61 HOH HOH . 
E 5 HOH A 33 1033 9 HOH HOH . 
E 5 HOH A 34 1034 54 HOH HOH . 
E 5 HOH A 35 1035 10 HOH HOH . 
E 5 HOH A 36 1036 36 HOH HOH . 
E 5 HOH A 37 1037 11 HOH HOH . 
E 5 HOH A 38 1038 83 HOH HOH . 
E 5 HOH A 39 1039 120 HOH HOH . 
E 5 HOH A 40 1040 23 HOH HOH . 
E 5 HOH A 41 1041 95 HOH HOH . 
E 5 HOH A 42 1042 114 HOH HOH . 
E 5 HOH A 43 1043 1 HOH HOH . 
E 5 HOH A 44 1044 37 HOH HOH . 
E 5 HOH A 45 1045 110 HOH HOH . 
E 5 HOH A 46 1046 30 HOH HOH . 
E 5 HOH A 47 1047 103 HOH HOH . 
E 5 HOH A 48 1048 92 HOH HOH . 
E 5 HOH A 49 1049 60 HOH HOH . 
E 5 HOH A 50 1050 115 HOH HOH . 
E 5 HOH A 51 1051 73 HOH HOH . 
E 5 HOH A 52 1052 90 HOH HOH . 
E 5 HOH A 53 1053 86 HOH HOH . 
E 5 HOH A 54 1054 48 HOH HOH . 
E 5 HOH A 55 1055 19 HOH HOH . 
E 5 HOH A 56 1056 67 HOH HOH . 
E 5 HOH A 57 1057 24 HOH HOH . 
E 5 HOH A 58 1058 6 HOH HOH . 
E 5 HOH A 59 1059 109 HOH HOH . 
E 5 HOH A 60 1060 47 HOH HOH . 
E 5 HOH A 61 1061 4 HOH HOH . 
E 5 HOH A 62 1062 22 HOH HOH . 
E 5 HOH A 63 1063 98 HOH HOH . 
E 5 HOH A 64 1064 46 HOH HOH . 
E 5 HOH A 65 1065 18 HOH HOH . 
E 5 HOH A 66 1066 93 HOH HOH . 
E 5 HOH A 67 1067 25 HOH HOH . 
E 5 HOH A 68 1068 8 HOH HOH . 
E 5 HOH A 69 1069 112 HOH HOH . 
E 5 HOH A 70 1070 102 HOH HOH . 
E 5 HOH A 71 1071 53 HOH HOH . 
E 5 HOH A 72 1072 42 HOH HOH . 
E 5 HOH A 73 1073 49 HOH HOH . 
E 5 HOH A 74 1074 28 HOH HOH . 
E 5 HOH A 75 1075 97 HOH HOH . 
E 5 HOH A 76 1076 96 HOH HOH . 
E 5 HOH A 77 1077 99 HOH HOH . 
E 5 HOH A 78 1078 79 HOH HOH . 
E 5 HOH A 79 1079 119 HOH HOH . 
E 5 HOH A 80 1080 38 HOH HOH . 
E 5 HOH A 81 1081 34 HOH HOH . 
E 5 HOH A 82 1082 20 HOH HOH . 
E 5 HOH A 83 1083 105 HOH HOH . 
E 5 HOH A 84 1084 116 HOH HOH . 
E 5 HOH A 85 1085 108 HOH HOH . 
E 5 HOH A 86 1086 68 HOH HOH . 
E 5 HOH A 87 1087 66 HOH HOH . 
E 5 HOH A 88 1088 106 HOH HOH . 
E 5 HOH A 89 1089 35 HOH HOH . 
E 5 HOH A 90 1090 59 HOH HOH . 
E 5 HOH A 91 1091 64 HOH HOH . 
E 5 HOH A 92 1092 72 HOH HOH . 
E 5 HOH A 93 1093 69 HOH HOH . 
E 5 HOH A 94 1094 94 HOH HOH . 
E 5 HOH A 95 1095 52 HOH HOH . 
E 5 HOH A 96 1096 101 HOH HOH . 
E 5 HOH A 97 1097 111 HOH HOH . 
E 5 HOH A 98 1098 80 HOH HOH . 
E 5 HOH A 99 1099 107 HOH HOH . 
E 5 HOH A 100 1100 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 PGF . . . C 3 44.38 33.332 41.487 1 98.16 ? C7 PGF 902 A 1 
HETATM 2 C C8 PGF . . . C 3 43.962 34.062 40.237 1 96 ? C8 PGF 902 A 1 
HETATM 3 O O5 PGF . . . C 3 45.07 33.9 39.327 1 94.52 ? O5 PGF 902 A 1 
HETATM 4 C C9 PGF . . . C 3 44.875 34.795 38.271 1 86.8 ? C9 PGF 902 A 1 
HETATM 5 C C10 PGF . . . C 3 45.748 34.361 37.12 1 87.08 ? C10 PGF 902 A 1 
HETATM 6 O O6 PGF . . . C 3 44.861 33.767 36.16 1 91 ? O6 PGF 902 A 1 
HETATM 7 C C11 PGF . . . C 3 44.131 34.746 35.442 1 91 ? C11 PGF 902 A 1 
HETATM 8 C C12 PGF . . . C 3 42.919 34.028 34.904 1 90.58 ? C12 PGF 902 A 1 
HETATM 9 O O7 PGF . . . C 3 41.803 34.799 35.423 1 92.32 ? O7 PGF 902 A 1 
HETATM 10 C C13 PGF . . . C 3 41.26 35.586 34.398 1 94.32 ? C13 PGF 902 A 1 
HETATM 11 C C14 PGF . . . C 3 40.461 36.74 34.977 1 94.23 ? C14 PGF 902 A 1 
HETATM 12 O O8 PGF . . . C 3 39.285 36.128 35.502 1 91.63 ? O8 PGF 902 A 1 
HETATM 13 C C15 PGF . . . C 3 38.942 36.416 36.851 1 93.43 ? C15 PGF 902 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           403 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#