data_5N8H # _model_server_result.job_id XI4LTgpnuFZ_jDS1dNM_KQ _model_server_result.datetime_utc '2024-12-26 10:47:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5N8H # _exptl.entry_id 5N8H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5N8H _cell.length_a 96.204 _cell.length_b 96.204 _cell.length_c 96.204 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N8H _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 89 A HIS 95 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc2 A NE2 HIS 94 A HIS 100 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc3 A NE2 HIS 129 A HIS 135 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc4 A SG CYS 130 A CYS 136 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc5 A ND1 HIS 139 A HIS 145 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc6 A SD MET 144 A MET 150 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc7 A NE2 HIS 300 A HIS 306 1_555 C CU CU . A CU 502 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc8 C CU CU . A CU 502 1_555 J O HOH . A HOH 832 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5N8H _atom_sites.fract_transf_matrix[1][1] 0.010395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 501 501 CU CU . C 2 CU A 1 502 502 CU CU . D 3 SO4 A 1 503 1 SO4 SO4 . E 3 SO4 A 1 504 4 SO4 SO4 . F 3 SO4 A 1 505 5 SO4 SO4 . G 3 SO4 A 1 506 9 SO4 SO4 . H 3 SO4 A 1 507 10 SO4 SO4 . I 3 SO4 A 1 508 12 SO4 SO4 . J 4 HOH A 1 601 635 HOH HOH . J 4 HOH A 2 602 516 HOH HOH . J 4 HOH A 3 603 602 HOH HOH . J 4 HOH A 4 604 630 HOH HOH . J 4 HOH A 5 605 165 HOH HOH . J 4 HOH A 6 606 36 HOH HOH . J 4 HOH A 7 607 570 HOH HOH . J 4 HOH A 8 608 628 HOH HOH . J 4 HOH A 9 609 430 HOH HOH . J 4 HOH A 10 610 148 HOH HOH . J 4 HOH A 11 611 485 HOH HOH . J 4 HOH A 12 612 310 HOH HOH . J 4 HOH A 13 613 584 HOH HOH . J 4 HOH A 14 614 644 HOH HOH . J 4 HOH A 15 615 563 HOH HOH . J 4 HOH A 16 616 295 HOH HOH . J 4 HOH A 17 617 324 HOH HOH . J 4 HOH A 18 618 182 HOH HOH . J 4 HOH A 19 619 527 HOH HOH . J 4 HOH A 20 620 597 HOH HOH . J 4 HOH A 21 621 362 HOH HOH . J 4 HOH A 22 622 112 HOH HOH . J 4 HOH A 23 623 264 HOH HOH . J 4 HOH A 24 624 566 HOH HOH . J 4 HOH A 25 625 123 HOH HOH . J 4 HOH A 26 626 266 HOH HOH . J 4 HOH A 27 627 587 HOH HOH . J 4 HOH A 28 628 574 HOH HOH . J 4 HOH A 29 629 184 HOH HOH . J 4 HOH A 30 630 335 HOH HOH . J 4 HOH A 31 631 173 HOH HOH . J 4 HOH A 32 632 394 HOH HOH . J 4 HOH A 33 633 224 HOH HOH . J 4 HOH A 34 634 269 HOH HOH . J 4 HOH A 35 635 496 HOH HOH . J 4 HOH A 36 636 158 HOH HOH . J 4 HOH A 37 637 16 HOH HOH . J 4 HOH A 38 638 568 HOH HOH . J 4 HOH A 39 639 647 HOH HOH . J 4 HOH A 40 640 556 HOH HOH . J 4 HOH A 41 641 519 HOH HOH . J 4 HOH A 42 642 327 HOH HOH . J 4 HOH A 43 643 343 HOH HOH . J 4 HOH A 44 644 82 HOH HOH . J 4 HOH A 45 645 294 HOH HOH . J 4 HOH A 46 646 536 HOH HOH . J 4 HOH A 47 647 490 HOH HOH . J 4 HOH A 48 648 480 HOH HOH . J 4 HOH A 49 649 187 HOH HOH . J 4 HOH A 50 650 532 HOH HOH . J 4 HOH A 51 651 285 HOH HOH . J 4 HOH A 52 652 297 HOH HOH . J 4 HOH A 53 653 512 HOH HOH . J 4 HOH A 54 654 115 HOH HOH . J 4 HOH A 55 655 199 HOH HOH . J 4 HOH A 56 656 658 HOH HOH . J 4 HOH A 57 657 299 HOH HOH . J 4 HOH A 58 658 651 HOH HOH . J 4 HOH A 59 659 507 HOH HOH . J 4 HOH A 60 660 317 HOH HOH . J 4 HOH A 61 661 109 HOH HOH . J 4 HOH A 62 662 265 HOH HOH . J 4 HOH A 63 663 504 HOH HOH . J 4 HOH A 64 664 318 HOH HOH . J 4 HOH A 65 665 272 HOH HOH . J 4 HOH A 66 666 54 HOH HOH . J 4 HOH A 67 667 301 HOH HOH . J 4 HOH A 68 668 210 HOH HOH . J 4 HOH A 69 669 505 HOH HOH . J 4 HOH A 70 670 63 HOH HOH . J 4 HOH A 71 671 156 HOH HOH . J 4 HOH A 72 672 22 HOH HOH . J 4 HOH A 73 673 180 HOH HOH . J 4 HOH A 74 674 296 HOH HOH . J 4 HOH A 75 675 40 HOH HOH . J 4 HOH A 76 676 542 HOH HOH . J 4 HOH A 77 677 418 HOH HOH . J 4 HOH A 78 678 106 HOH HOH . J 4 HOH A 79 679 7 HOH HOH . J 4 HOH A 80 680 57 HOH HOH . J 4 HOH A 81 681 306 HOH HOH . J 4 HOH A 82 682 97 HOH HOH . J 4 HOH A 83 683 14 HOH HOH . J 4 HOH A 84 684 591 HOH HOH . J 4 HOH A 85 685 514 HOH HOH . J 4 HOH A 86 686 138 HOH HOH . J 4 HOH A 87 687 576 HOH HOH . J 4 HOH A 88 688 250 HOH HOH . J 4 HOH A 89 689 619 HOH HOH . J 4 HOH A 90 690 254 HOH HOH . J 4 HOH A 91 691 214 HOH HOH . J 4 HOH A 92 692 124 HOH HOH . J 4 HOH A 93 693 307 HOH HOH . J 4 HOH A 94 694 338 HOH HOH . J 4 HOH A 95 695 649 HOH HOH . J 4 HOH A 96 696 495 HOH HOH . J 4 HOH A 97 697 334 HOH HOH . J 4 HOH A 98 698 289 HOH HOH . J 4 HOH A 99 699 470 HOH HOH . J 4 HOH A 100 700 105 HOH HOH . J 4 HOH A 101 701 520 HOH HOH . J 4 HOH A 102 702 245 HOH HOH . J 4 HOH A 103 703 503 HOH HOH . J 4 HOH A 104 704 567 HOH HOH . J 4 HOH A 105 705 178 HOH HOH . J 4 HOH A 106 706 203 HOH HOH . J 4 HOH A 107 707 483 HOH HOH . J 4 HOH A 108 708 241 HOH HOH . J 4 HOH A 109 709 283 HOH HOH . J 4 HOH A 110 710 136 HOH HOH . J 4 HOH A 111 711 185 HOH HOH . J 4 HOH A 112 712 304 HOH HOH . J 4 HOH A 113 713 104 HOH HOH . J 4 HOH A 114 714 612 HOH HOH . J 4 HOH A 115 715 484 HOH HOH . J 4 HOH A 116 716 573 HOH HOH . J 4 HOH A 117 717 125 HOH HOH . J 4 HOH A 118 718 107 HOH HOH . J 4 HOH A 119 719 284 HOH HOH . J 4 HOH A 120 720 273 HOH HOH . J 4 HOH A 121 721 337 HOH HOH . J 4 HOH A 122 722 225 HOH HOH . J 4 HOH A 123 723 236 HOH HOH . J 4 HOH A 124 724 71 HOH HOH . J 4 HOH A 125 725 605 HOH HOH . J 4 HOH A 126 726 46 HOH HOH . J 4 HOH A 127 727 177 HOH HOH . J 4 HOH A 128 728 564 HOH HOH . J 4 HOH A 129 729 557 HOH HOH . J 4 HOH A 130 730 581 HOH HOH . J 4 HOH A 131 731 375 HOH HOH . J 4 HOH A 132 732 251 HOH HOH . J 4 HOH A 133 733 646 HOH HOH . J 4 HOH A 134 734 167 HOH HOH . J 4 HOH A 135 735 135 HOH HOH . J 4 HOH A 136 736 620 HOH HOH . J 4 HOH A 137 737 137 HOH HOH . J 4 HOH A 138 738 253 HOH HOH . J 4 HOH A 139 739 42 HOH HOH . J 4 HOH A 140 740 246 HOH HOH . J 4 HOH A 141 741 181 HOH HOH . J 4 HOH A 142 742 500 HOH HOH . J 4 HOH A 143 743 64 HOH HOH . J 4 HOH A 144 744 275 HOH HOH . J 4 HOH A 145 745 311 HOH HOH . J 4 HOH A 146 746 215 HOH HOH . J 4 HOH A 147 747 506 HOH HOH . J 4 HOH A 148 748 217 HOH HOH . J 4 HOH A 149 749 290 HOH HOH . J 4 HOH A 150 750 487 HOH HOH . J 4 HOH A 151 751 472 HOH HOH . J 4 HOH A 152 752 209 HOH HOH . J 4 HOH A 153 753 12 HOH HOH . J 4 HOH A 154 754 257 HOH HOH . J 4 HOH A 155 755 164 HOH HOH . J 4 HOH A 156 756 603 HOH HOH . J 4 HOH A 157 757 559 HOH HOH . J 4 HOH A 158 758 94 HOH HOH . J 4 HOH A 159 759 639 HOH HOH . J 4 HOH A 160 760 634 HOH HOH . J 4 HOH A 161 761 144 HOH HOH . J 4 HOH A 162 762 19 HOH HOH . J 4 HOH A 163 763 526 HOH HOH . J 4 HOH A 164 764 69 HOH HOH . J 4 HOH A 165 765 320 HOH HOH . J 4 HOH A 166 766 197 HOH HOH . J 4 HOH A 167 767 240 HOH HOH . J 4 HOH A 168 768 594 HOH HOH . J 4 HOH A 169 769 357 HOH HOH . J 4 HOH A 170 770 346 HOH HOH . J 4 HOH A 171 771 258 HOH HOH . J 4 HOH A 172 772 67 HOH HOH . J 4 HOH A 173 773 565 HOH HOH . J 4 HOH A 174 774 498 HOH HOH . J 4 HOH A 175 775 501 HOH HOH . J 4 HOH A 176 776 216 HOH HOH . J 4 HOH A 177 777 575 HOH HOH . J 4 HOH A 178 778 196 HOH HOH . J 4 HOH A 179 779 383 HOH HOH . J 4 HOH A 180 780 212 HOH HOH . J 4 HOH A 181 781 513 HOH HOH . J 4 HOH A 182 782 339 HOH HOH . J 4 HOH A 183 783 571 HOH HOH . J 4 HOH A 184 784 497 HOH HOH . J 4 HOH A 185 785 486 HOH HOH . J 4 HOH A 186 786 139 HOH HOH . J 4 HOH A 187 787 660 HOH HOH . J 4 HOH A 188 788 648 HOH HOH . J 4 HOH A 189 789 79 HOH HOH . J 4 HOH A 190 790 142 HOH HOH . J 4 HOH A 191 791 51 HOH HOH . J 4 HOH A 192 792 66 HOH HOH . J 4 HOH A 193 793 657 HOH HOH . J 4 HOH A 194 794 522 HOH HOH . J 4 HOH A 195 795 640 HOH HOH . J 4 HOH A 196 796 552 HOH HOH . J 4 HOH A 197 797 268 HOH HOH . J 4 HOH A 198 798 607 HOH HOH . J 4 HOH A 199 799 515 HOH HOH . J 4 HOH A 200 800 611 HOH HOH . J 4 HOH A 201 801 38 HOH HOH . J 4 HOH A 202 802 298 HOH HOH . J 4 HOH A 203 803 601 HOH HOH . J 4 HOH A 204 804 186 HOH HOH . J 4 HOH A 205 805 604 HOH HOH . J 4 HOH A 206 806 174 HOH HOH . J 4 HOH A 207 807 325 HOH HOH . J 4 HOH A 208 808 332 HOH HOH . J 4 HOH A 209 809 45 HOH HOH . J 4 HOH A 210 810 292 HOH HOH . J 4 HOH A 211 811 569 HOH HOH . J 4 HOH A 212 812 547 HOH HOH . J 4 HOH A 213 813 616 HOH HOH . J 4 HOH A 214 814 652 HOH HOH . J 4 HOH A 215 815 655 HOH HOH . J 4 HOH A 216 816 175 HOH HOH . J 4 HOH A 217 817 101 HOH HOH . J 4 HOH A 218 818 218 HOH HOH . J 4 HOH A 219 819 625 HOH HOH . J 4 HOH A 220 820 92 HOH HOH . J 4 HOH A 221 821 9 HOH HOH . J 4 HOH A 222 822 494 HOH HOH . J 4 HOH A 223 823 653 HOH HOH . J 4 HOH A 224 824 434 HOH HOH . J 4 HOH A 225 825 204 HOH HOH . J 4 HOH A 226 826 592 HOH HOH . J 4 HOH A 227 827 235 HOH HOH . J 4 HOH A 228 828 548 HOH HOH . J 4 HOH A 229 829 624 HOH HOH . J 4 HOH A 230 830 226 HOH HOH . J 4 HOH A 231 831 305 HOH HOH . J 4 HOH A 232 832 534 HOH HOH . J 4 HOH A 233 833 554 HOH HOH . J 4 HOH A 234 834 309 HOH HOH . J 4 HOH A 235 835 627 HOH HOH . J 4 HOH A 236 836 121 HOH HOH . J 4 HOH A 237 837 585 HOH HOH . J 4 HOH A 238 838 489 HOH HOH . J 4 HOH A 239 839 99 HOH HOH . J 4 HOH A 240 840 518 HOH HOH . J 4 HOH A 241 841 308 HOH HOH . J 4 HOH A 242 842 361 HOH HOH . J 4 HOH A 243 843 589 HOH HOH . J 4 HOH A 244 844 259 HOH HOH . J 4 HOH A 245 845 492 HOH HOH . J 4 HOH A 246 846 593 HOH HOH . J 4 HOH A 247 847 621 HOH HOH . J 4 HOH A 248 848 543 HOH HOH . J 4 HOH A 249 849 545 HOH HOH . J 4 HOH A 250 850 588 HOH HOH . J 4 HOH A 251 851 147 HOH HOH . J 4 HOH A 252 852 531 HOH HOH . J 4 HOH A 253 853 599 HOH HOH . J 4 HOH A 254 854 538 HOH HOH . J 4 HOH A 255 855 656 HOH HOH . J 4 HOH A 256 856 549 HOH HOH . J 4 HOH A 257 857 645 HOH HOH . J 4 HOH A 258 858 636 HOH HOH . J 4 HOH A 259 859 126 HOH HOH . J 4 HOH A 260 860 623 HOH HOH . J 4 HOH A 261 861 613 HOH HOH . J 4 HOH A 262 862 540 HOH HOH . J 4 HOH A 263 863 618 HOH HOH . J 4 HOH A 264 864 641 HOH HOH . J 4 HOH A 265 865 530 HOH HOH . J 4 HOH A 266 866 661 HOH HOH . J 4 HOH A 267 867 59 HOH HOH . J 4 HOH A 268 868 508 HOH HOH . J 4 HOH A 269 869 33 HOH HOH . J 4 HOH A 270 870 572 HOH HOH . J 4 HOH A 271 871 555 HOH HOH . J 4 HOH A 272 872 633 HOH HOH . J 4 HOH A 273 873 31 HOH HOH . J 4 HOH A 274 874 558 HOH HOH . J 4 HOH A 275 875 579 HOH HOH . J 4 HOH A 276 876 562 HOH HOH . J 4 HOH A 277 877 550 HOH HOH . J 4 HOH A 278 878 561 HOH HOH . J 4 HOH A 279 879 49 HOH HOH . J 4 HOH A 280 880 98 HOH HOH . J 4 HOH A 281 881 659 HOH HOH . J 4 HOH A 282 882 654 HOH HOH . J 4 HOH A 283 883 583 HOH HOH . J 4 HOH A 284 884 524 HOH HOH . J 4 HOH A 285 885 560 HOH HOH . J 4 HOH A 286 886 134 HOH HOH . J 4 HOH A 287 887 578 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -7.853 _atom_site.Cartn_y 7.987 _atom_site.Cartn_z 15.9 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.04 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #