data_5N8T
#
_model_server_result.job_id            bc3BXzkTpWHznlvhhEYvLQ 
_model_server_result.datetime_utc      '2025-01-13 18:13:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n8t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":206}' 
#
_entry.id    5N8T 
#
_exptl.entry_id    5N8T 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              89.093 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-ALANINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5N8T 
_cell.length_a            57.779 
_cell.length_b            57.779 
_cell.length_c            84.405 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N8T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C DLE . A DLE 201 1_555 C N DTR . A DTR 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 C C DTR . A DTR 202 1_555 D N DGN . A DGN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 D C DGN . A DGN 203 1_555 E N DHI . A DHI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale4 E C DHI . A DHI 204 1_555 F N DGL . A DGL 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 F C DGL . A DGL 205 1_555 G N DAL . A DAL 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 G C DAL . A DAL 206 1_555 H N DTH . A DTH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale7 H C DTH . A DTH 207 1_555 I N DTR . A DTR 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale8 I C DTR . A DTR 208 1_555 J N DLY . A DLY 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
#
_chem_comp.formula           'C3 H7 N O2' 
_chem_comp.formula_weight    89.093 
_chem_comp.id                DAL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-ALANINE 
_chem_comp.type              'd-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA DAL sing 70 n n 
N H DAL sing 71 n n 
N H2 DAL sing 72 n n 
CA CB DAL sing 73 n n 
CA C DAL sing 74 n n 
CA HA DAL sing 75 n n 
CB HB1 DAL sing 76 n n 
CB HB2 DAL sing 77 n n 
CB HB3 DAL sing 78 n n 
C O DAL doub 79 n n 
C OXT DAL sing 80 n n 
OXT HXT DAL sing 81 n n 
#
_atom_sites.entry_id                     5N8T 
_atom_sites.fract_transf_matrix[1][1]    0.017307 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017307 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011848 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DLE A 1 201 3 DLE DLE . 
C 3 DTR A 1 202 4 DTR DTR . 
D 4 DGN A 1 203 5 DGN DGN . 
E 5 DHI A 1 204 6 DHI DHI . 
F 6 DGL A 1 205 7 DGL DGL . 
G 7 DAL A 1 206 8 DAL DAL . 
H 8 DTH A 1 207 9 DTH DTH . 
I 3 DTR A 1 208 10 DTR DTR . 
J 9 DLY A 1 209 11 DLY DLY . 
K 10 HOH A 1 301 99 HOH HOH . 
K 10 HOH A 2 302 29 HOH HOH . 
K 10 HOH A 3 303 21 HOH HOH . 
K 10 HOH A 4 304 35 HOH HOH . 
K 10 HOH A 5 305 14 HOH HOH . 
K 10 HOH A 6 306 24 HOH HOH . 
K 10 HOH A 7 307 101 HOH HOH . 
K 10 HOH A 8 308 1 HOH HOH . 
K 10 HOH A 9 309 45 HOH HOH . 
K 10 HOH A 10 310 12 HOH HOH . 
K 10 HOH A 11 311 26 HOH HOH . 
K 10 HOH A 12 312 59 HOH HOH . 
K 10 HOH A 13 313 107 HOH HOH . 
K 10 HOH A 14 314 72 HOH HOH . 
K 10 HOH A 15 315 38 HOH HOH . 
K 10 HOH A 16 316 22 HOH HOH . 
K 10 HOH A 17 317 8 HOH HOH . 
K 10 HOH A 18 318 13 HOH HOH . 
K 10 HOH A 19 319 60 HOH HOH . 
K 10 HOH A 20 320 108 HOH HOH . 
K 10 HOH A 21 321 82 HOH HOH . 
K 10 HOH A 22 322 106 HOH HOH . 
K 10 HOH A 23 323 65 HOH HOH . 
K 10 HOH A 24 324 39 HOH HOH . 
K 10 HOH A 25 325 34 HOH HOH . 
K 10 HOH A 26 326 7 HOH HOH . 
K 10 HOH A 27 327 102 HOH HOH . 
K 10 HOH A 28 328 5 HOH HOH . 
K 10 HOH A 29 329 103 HOH HOH . 
K 10 HOH A 30 330 31 HOH HOH . 
K 10 HOH A 31 331 40 HOH HOH . 
K 10 HOH A 32 332 41 HOH HOH . 
K 10 HOH A 33 333 2 HOH HOH . 
K 10 HOH A 34 334 100 HOH HOH . 
K 10 HOH A 35 335 69 HOH HOH . 
K 10 HOH A 36 336 73 HOH HOH . 
K 10 HOH A 37 337 105 HOH HOH . 
K 10 HOH A 38 338 32 HOH HOH . 
K 10 HOH A 39 339 17 HOH HOH . 
K 10 HOH A 40 340 98 HOH HOH . 
K 10 HOH A 41 341 28 HOH HOH . 
K 10 HOH A 42 342 15 HOH HOH . 
K 10 HOH A 43 343 44 HOH HOH . 
K 10 HOH A 44 344 66 HOH HOH . 
K 10 HOH A 45 345 20 HOH HOH . 
K 10 HOH A 46 346 51 HOH HOH . 
K 10 HOH A 47 347 27 HOH HOH . 
K 10 HOH A 48 348 4 HOH HOH . 
K 10 HOH A 49 349 46 HOH HOH . 
K 10 HOH A 50 350 11 HOH HOH . 
K 10 HOH A 51 351 30 HOH HOH . 
K 10 HOH A 52 352 52 HOH HOH . 
K 10 HOH A 53 353 81 HOH HOH . 
K 10 HOH A 54 354 67 HOH HOH . 
K 10 HOH A 55 355 16 HOH HOH . 
K 10 HOH A 56 356 104 HOH HOH . 
K 10 HOH A 57 357 18 HOH HOH . 
K 10 HOH A 58 358 58 HOH HOH . 
K 10 HOH A 59 359 47 HOH HOH . 
K 10 HOH A 60 360 49 HOH HOH . 
K 10 HOH A 61 361 54 HOH HOH . 
K 10 HOH A 62 362 91 HOH HOH . 
K 10 HOH A 63 363 95 HOH HOH . 
K 10 HOH A 64 364 77 HOH HOH . 
K 10 HOH A 65 365 97 HOH HOH . 
K 10 HOH A 66 366 96 HOH HOH . 
K 10 HOH A 67 367 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N DAL . . . G 7 4.192 11.888 14.413 1 44.35 ? N DAL 206 A 1 
HETATM 2 C CA DAL . . . G 7 4.811 10.63 13.951 1 44.29 ? CA DAL 206 A 1 
HETATM 3 C CB DAL . . . G 7 4.194 10.191 12.628 1 41.98 ? CB DAL 206 A 1 
HETATM 4 C C DAL . . . G 7 4.713 9.462 14.909 1 46.44 ? C DAL 206 A 1 
HETATM 5 O O DAL . . . G 7 5.395 8.451 14.693 1 47.23 ? O DAL 206 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           394 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           5 
#