data_5N9C # _model_server_result.job_id mn-E1CWBsy5ZqTwn4CtLzQ _model_server_result.datetime_utc '2025-07-31 02:19:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":204}' # _entry.id 5N9C # _exptl.entry_id 5N9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 61.4 _cell.angle_beta 84.03 _cell.angle_gamma 84.1 _cell.entry_id 5N9C _cell.length_a 34.761 _cell.length_b 43.386 _cell.length_c 43.593 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ACE 1 F ACE 1 1_555 C N 2L5 2 F 2L5 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale2 C C 2L5 2 F 2L5 2 1_555 C N PRO 3 F PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 C C PRO 4 F PRO 4 1_555 C N 92B 5 F 92B 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 D C ACE 1 G ACE 1 1_555 D N 2L5 2 G 2L5 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale5 D C 2L5 2 G 2L5 2 1_555 D N PRO 3 G PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 D C PRO 4 G PRO 4 1_555 D N 92B 5 G 92B 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale7 E C ACE 1 H ACE 1 1_555 E N 2L5 2 H 2L5 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale8 E C 2L5 2 H 2L5 2 1_555 E N PRO 3 H PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale9 E C PRO 4 H PRO 4 1_555 E N 92B 5 H 92B 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale10 F C ACE 1 M ACE 1 1_555 F N 2L5 2 M 2L5 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale11 F C 2L5 2 M 2L5 2 1_555 F N PRO 3 M PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 F C PRO 4 M PRO 4 1_555 F N 92B 5 M 92B 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 314 n n N O2 NO3 sing 315 n n N O3 NO3 sing 316 n n # _atom_sites.entry_id 5N9C _atom_sites.fract_transf_matrix[1][1] 0.028768 _atom_sites.fract_transf_matrix[1][2] -0.002975 _atom_sites.fract_transf_matrix[1][3] -0.001816 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023172 _atom_sites.fract_transf_matrix[2][3] -0.01244 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 SO4 A 1 201 2 SO4 SO4 . H 4 GOL A 1 202 1 GOL GOL . I 5 NO3 A 1 203 1 NO3 NO3 . J 5 NO3 A 1 204 2 NO3 NO3 . K 3 SO4 B 1 201 5 SO4 SO4 . L 3 SO4 B 1 202 7 SO4 SO4 . M 4 GOL B 1 203 2 GOL GOL . N 5 NO3 B 1 204 3 NO3 NO3 . O 6 HOH A 1 301 426 HOH HOH . O 6 HOH A 2 302 216 HOH HOH . O 6 HOH A 3 303 429 HOH HOH . O 6 HOH A 4 304 289 HOH HOH . O 6 HOH A 5 305 276 HOH HOH . O 6 HOH A 6 306 259 HOH HOH . O 6 HOH A 7 307 85 HOH HOH . O 6 HOH A 8 308 221 HOH HOH . O 6 HOH A 9 309 170 HOH HOH . O 6 HOH A 10 310 242 HOH HOH . O 6 HOH A 11 311 257 HOH HOH . O 6 HOH A 12 312 76 HOH HOH . O 6 HOH A 13 313 41 HOH HOH . O 6 HOH A 14 314 146 HOH HOH . O 6 HOH A 15 315 78 HOH HOH . O 6 HOH A 16 316 421 HOH HOH . O 6 HOH A 17 317 98 HOH HOH . O 6 HOH A 18 318 140 HOH HOH . O 6 HOH A 19 319 125 HOH HOH . O 6 HOH A 20 320 128 HOH HOH . O 6 HOH A 21 321 275 HOH HOH . O 6 HOH A 22 322 209 HOH HOH . O 6 HOH A 23 323 6 HOH HOH . O 6 HOH A 24 324 56 HOH HOH . O 6 HOH A 25 325 9 HOH HOH . O 6 HOH A 26 326 54 HOH HOH . O 6 HOH A 27 327 24 HOH HOH . O 6 HOH A 28 328 74 HOH HOH . O 6 HOH A 29 329 43 HOH HOH . O 6 HOH A 30 330 45 HOH HOH . O 6 HOH A 31 331 107 HOH HOH . O 6 HOH A 32 332 10 HOH HOH . O 6 HOH A 33 333 7 HOH HOH . O 6 HOH A 34 334 1 HOH HOH . O 6 HOH A 35 335 18 HOH HOH . O 6 HOH A 36 336 422 HOH HOH . O 6 HOH A 37 337 165 HOH HOH . O 6 HOH A 38 338 23 HOH HOH . O 6 HOH A 39 339 11 HOH HOH . O 6 HOH A 40 340 204 HOH HOH . O 6 HOH A 41 341 419 HOH HOH . O 6 HOH A 42 342 214 HOH HOH . O 6 HOH A 43 343 124 HOH HOH . O 6 HOH A 44 344 428 HOH HOH . O 6 HOH A 45 345 279 HOH HOH . O 6 HOH A 46 346 27 HOH HOH . O 6 HOH A 47 347 431 HOH HOH . O 6 HOH A 48 348 115 HOH HOH . O 6 HOH A 49 349 159 HOH HOH . O 6 HOH A 50 350 38 HOH HOH . O 6 HOH A 51 351 340 HOH HOH . O 6 HOH A 52 352 3 HOH HOH . O 6 HOH A 53 353 264 HOH HOH . O 6 HOH A 54 354 119 HOH HOH . O 6 HOH A 55 355 100 HOH HOH . O 6 HOH A 56 356 94 HOH HOH . O 6 HOH A 57 357 112 HOH HOH . O 6 HOH A 58 358 44 HOH HOH . O 6 HOH A 59 359 34 HOH HOH . O 6 HOH A 60 360 58 HOH HOH . O 6 HOH A 61 361 95 HOH HOH . O 6 HOH A 62 362 117 HOH HOH . O 6 HOH A 63 363 72 HOH HOH . O 6 HOH A 64 364 192 HOH HOH . O 6 HOH A 65 365 99 HOH HOH . O 6 HOH A 66 366 48 HOH HOH . O 6 HOH A 67 367 142 HOH HOH . O 6 HOH A 68 368 175 HOH HOH . O 6 HOH A 69 369 66 HOH HOH . O 6 HOH A 70 370 163 HOH HOH . O 6 HOH A 71 371 39 HOH HOH . O 6 HOH A 72 372 161 HOH HOH . O 6 HOH A 73 373 217 HOH HOH . O 6 HOH A 74 374 37 HOH HOH . O 6 HOH A 75 375 68 HOH HOH . O 6 HOH A 76 376 19 HOH HOH . O 6 HOH A 77 377 104 HOH HOH . O 6 HOH A 78 378 53 HOH HOH . O 6 HOH A 79 379 129 HOH HOH . O 6 HOH A 80 380 84 HOH HOH . O 6 HOH A 81 381 26 HOH HOH . O 6 HOH A 82 382 420 HOH HOH . O 6 HOH A 83 383 14 HOH HOH . O 6 HOH A 84 384 122 HOH HOH . O 6 HOH A 85 385 231 HOH HOH . O 6 HOH A 86 386 148 HOH HOH . O 6 HOH A 87 387 181 HOH HOH . O 6 HOH A 88 388 106 HOH HOH . O 6 HOH A 89 389 63 HOH HOH . O 6 HOH A 90 390 60 HOH HOH . O 6 HOH A 91 391 93 HOH HOH . O 6 HOH A 92 392 210 HOH HOH . O 6 HOH A 93 393 77 HOH HOH . O 6 HOH A 94 394 8 HOH HOH . O 6 HOH A 95 395 70 HOH HOH . O 6 HOH A 96 396 168 HOH HOH . O 6 HOH A 97 397 222 HOH HOH . O 6 HOH A 98 398 278 HOH HOH . O 6 HOH A 99 399 315 HOH HOH . O 6 HOH A 100 400 247 HOH HOH . O 6 HOH A 101 401 182 HOH HOH . O 6 HOH A 102 402 400 HOH HOH . O 6 HOH A 103 403 20 HOH HOH . O 6 HOH A 104 404 323 HOH HOH . O 6 HOH A 105 405 408 HOH HOH . O 6 HOH A 106 406 87 HOH HOH . O 6 HOH A 107 407 195 HOH HOH . O 6 HOH A 108 408 152 HOH HOH . O 6 HOH A 109 409 288 HOH HOH . O 6 HOH A 110 410 427 HOH HOH . O 6 HOH A 111 411 169 HOH HOH . O 6 HOH A 112 412 4 HOH HOH . O 6 HOH A 113 413 130 HOH HOH . O 6 HOH A 114 414 284 HOH HOH . O 6 HOH A 115 415 61 HOH HOH . O 6 HOH A 116 416 171 HOH HOH . O 6 HOH A 117 417 121 HOH HOH . O 6 HOH A 118 418 346 HOH HOH . O 6 HOH A 119 419 5 HOH HOH . O 6 HOH A 120 420 113 HOH HOH . O 6 HOH A 121 421 97 HOH HOH . O 6 HOH A 122 422 253 HOH HOH . O 6 HOH A 123 423 311 HOH HOH . O 6 HOH A 124 424 262 HOH HOH . O 6 HOH A 125 425 145 HOH HOH . O 6 HOH A 126 426 75 HOH HOH . O 6 HOH A 127 427 91 HOH HOH . O 6 HOH A 128 428 398 HOH HOH . P 6 HOH B 1 301 412 HOH HOH . P 6 HOH B 2 302 229 HOH HOH . P 6 HOH B 3 303 423 HOH HOH . P 6 HOH B 4 304 403 HOH HOH . P 6 HOH B 5 305 292 HOH HOH . P 6 HOH B 6 306 139 HOH HOH . P 6 HOH B 7 307 173 HOH HOH . P 6 HOH B 8 308 164 HOH HOH . P 6 HOH B 9 309 51 HOH HOH . P 6 HOH B 10 310 172 HOH HOH . P 6 HOH B 11 311 213 HOH HOH . P 6 HOH B 12 312 127 HOH HOH . P 6 HOH B 13 313 50 HOH HOH . P 6 HOH B 14 314 136 HOH HOH . P 6 HOH B 15 315 108 HOH HOH . P 6 HOH B 16 316 399 HOH HOH . P 6 HOH B 17 317 202 HOH HOH . P 6 HOH B 18 318 118 HOH HOH . P 6 HOH B 19 319 86 HOH HOH . P 6 HOH B 20 320 80 HOH HOH . P 6 HOH B 21 321 15 HOH HOH . P 6 HOH B 22 322 28 HOH HOH . P 6 HOH B 23 323 413 HOH HOH . P 6 HOH B 24 324 167 HOH HOH . P 6 HOH B 25 325 52 HOH HOH . P 6 HOH B 26 326 2 HOH HOH . P 6 HOH B 27 327 64 HOH HOH . P 6 HOH B 28 328 123 HOH HOH . P 6 HOH B 29 329 59 HOH HOH . P 6 HOH B 30 330 12 HOH HOH . P 6 HOH B 31 331 144 HOH HOH . P 6 HOH B 32 332 404 HOH HOH . P 6 HOH B 33 333 22 HOH HOH . P 6 HOH B 34 334 55 HOH HOH . P 6 HOH B 35 335 35 HOH HOH . P 6 HOH B 36 336 67 HOH HOH . P 6 HOH B 37 337 65 HOH HOH . P 6 HOH B 38 338 157 HOH HOH . P 6 HOH B 39 339 49 HOH HOH . P 6 HOH B 40 340 13 HOH HOH . P 6 HOH B 41 341 425 HOH HOH . P 6 HOH B 42 342 102 HOH HOH . P 6 HOH B 43 343 101 HOH HOH . P 6 HOH B 44 344 135 HOH HOH . P 6 HOH B 45 345 42 HOH HOH . P 6 HOH B 46 346 103 HOH HOH . P 6 HOH B 47 347 29 HOH HOH . P 6 HOH B 48 348 57 HOH HOH . P 6 HOH B 49 349 187 HOH HOH . P 6 HOH B 50 350 32 HOH HOH . P 6 HOH B 51 351 154 HOH HOH . P 6 HOH B 52 352 162 HOH HOH . P 6 HOH B 53 353 89 HOH HOH . P 6 HOH B 54 354 46 HOH HOH . P 6 HOH B 55 355 133 HOH HOH . P 6 HOH B 56 356 110 HOH HOH . P 6 HOH B 57 357 88 HOH HOH . P 6 HOH B 58 358 17 HOH HOH . P 6 HOH B 59 359 62 HOH HOH . P 6 HOH B 60 360 40 HOH HOH . P 6 HOH B 61 361 296 HOH HOH . P 6 HOH B 62 362 33 HOH HOH . P 6 HOH B 63 363 25 HOH HOH . P 6 HOH B 64 364 394 HOH HOH . P 6 HOH B 65 365 31 HOH HOH . P 6 HOH B 66 366 347 HOH HOH . P 6 HOH B 67 367 71 HOH HOH . P 6 HOH B 68 368 430 HOH HOH . P 6 HOH B 69 369 30 HOH HOH . P 6 HOH B 70 370 417 HOH HOH . P 6 HOH B 71 371 418 HOH HOH . P 6 HOH B 72 372 47 HOH HOH . P 6 HOH B 73 373 183 HOH HOH . P 6 HOH B 74 374 205 HOH HOH . P 6 HOH B 75 375 79 HOH HOH . P 6 HOH B 76 376 83 HOH HOH . P 6 HOH B 77 377 138 HOH HOH . P 6 HOH B 78 378 73 HOH HOH . P 6 HOH B 79 379 395 HOH HOH . P 6 HOH B 80 380 69 HOH HOH . P 6 HOH B 81 381 105 HOH HOH . P 6 HOH B 82 382 141 HOH HOH . P 6 HOH B 83 383 220 HOH HOH . P 6 HOH B 84 384 298 HOH HOH . P 6 HOH B 85 385 177 HOH HOH . P 6 HOH B 86 386 16 HOH HOH . P 6 HOH B 87 387 114 HOH HOH . P 6 HOH B 88 388 137 HOH HOH . P 6 HOH B 89 389 36 HOH HOH . P 6 HOH B 90 390 21 HOH HOH . P 6 HOH B 91 391 190 HOH HOH . P 6 HOH B 92 392 416 HOH HOH . P 6 HOH B 93 393 185 HOH HOH . P 6 HOH B 94 394 255 HOH HOH . P 6 HOH B 95 395 409 HOH HOH . P 6 HOH B 96 396 282 HOH HOH . P 6 HOH B 97 397 223 HOH HOH . P 6 HOH B 98 398 251 HOH HOH . P 6 HOH B 99 399 234 HOH HOH . P 6 HOH B 100 400 232 HOH HOH . P 6 HOH B 101 401 424 HOH HOH . P 6 HOH B 102 402 90 HOH HOH . P 6 HOH B 103 403 328 HOH HOH . P 6 HOH B 104 404 96 HOH HOH . P 6 HOH B 105 405 211 HOH HOH . Q 6 HOH F 1 101 166 HOH HOH . Q 6 HOH F 2 102 120 HOH HOH . R 6 HOH G 1 101 151 HOH HOH . R 6 HOH G 2 102 212 HOH HOH . R 6 HOH G 3 103 184 HOH HOH . S 6 HOH H 1 101 389 HOH HOH . S 6 HOH H 2 102 189 HOH HOH . T 6 HOH M 1 101 81 HOH HOH . T 6 HOH M 2 102 246 HOH HOH . T 6 HOH M 3 103 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . A . J 5 -1.28 39.268 -17.573 0.58 14.83 ? N NO3 204 A 1 HETATM 2 N N NO3 . B . J 5 -1.419 38.793 -17.669 0.42 15.93 ? N NO3 204 A 1 HETATM 3 O O1 NO3 . A . J 5 -2.027 38.37 -17.051 0.58 16 ? O1 NO3 204 A 1 HETATM 4 O O1 NO3 . B . J 5 -1.915 38.175 -16.697 0.42 15.86 ? O1 NO3 204 A 1 HETATM 5 O O2 NO3 . A . J 5 -0.318 38.925 -18.295 0.58 16.83 ? O2 NO3 204 A 1 HETATM 6 O O2 NO3 . B . J 5 -0.415 39.535 -17.545 0.42 17.11 ? O2 NO3 204 A 1 HETATM 7 O O3 NO3 . A . J 5 -1.429 40.509 -17.367 0.58 15.38 ? O3 NO3 204 A 1 HETATM 8 O O3 NO3 . B . J 5 -1.92 38.593 -18.783 0.42 14.83 ? O3 NO3 204 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #