data_5N9L # _model_server_result.job_id JUuL2tqoR2NTzfzKC2T6tg _model_server_result.datetime_utc '2024-10-16 12:21:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5n9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5N9L # _exptl.entry_id 5N9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.94 _cell.angle_gamma 90 _cell.entry_id 5N9L _cell.length_a 57.437 _cell.length_b 45.706 _cell.length_c 63.187 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5N9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 179 n n C1 C2 GOL sing 180 n n C1 H11 GOL sing 181 n n C1 H12 GOL sing 182 n n O1 HO1 GOL sing 183 n n C2 O2 GOL sing 184 n n C2 C3 GOL sing 185 n n C2 H2 GOL sing 186 n n O2 HO2 GOL sing 187 n n C3 O3 GOL sing 188 n n C3 H31 GOL sing 189 n n C3 H32 GOL sing 190 n n O3 HO3 GOL sing 191 n n # _atom_sites.entry_id 5N9L _atom_sites.fract_transf_matrix[1][1] 0.01741 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006663 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8QH A 1 401 1 8QH DRG . C 3 ACT A 1 402 2 ACT ACT . D 3 ACT A 1 403 3 ACT ACT . E 4 GOL A 1 404 4 GOL GOL . F 4 GOL A 1 405 5 GOL GOL . G 4 GOL A 1 406 6 GOL GOL . H 4 GOL A 1 407 7 GOL GOL . I 5 HOH A 1 501 131 HOH HOH . I 5 HOH A 2 502 148 HOH HOH . I 5 HOH A 3 503 49 HOH HOH . I 5 HOH A 4 504 80 HOH HOH . I 5 HOH A 5 505 159 HOH HOH . I 5 HOH A 6 506 160 HOH HOH . I 5 HOH A 7 507 58 HOH HOH . I 5 HOH A 8 508 199 HOH HOH . I 5 HOH A 9 509 206 HOH HOH . I 5 HOH A 10 510 156 HOH HOH . I 5 HOH A 11 511 36 HOH HOH . I 5 HOH A 12 512 69 HOH HOH . I 5 HOH A 13 513 140 HOH HOH . I 5 HOH A 14 514 123 HOH HOH . I 5 HOH A 15 515 85 HOH HOH . I 5 HOH A 16 516 39 HOH HOH . I 5 HOH A 17 517 102 HOH HOH . I 5 HOH A 18 518 212 HOH HOH . I 5 HOH A 19 519 37 HOH HOH . I 5 HOH A 20 520 72 HOH HOH . I 5 HOH A 21 521 169 HOH HOH . I 5 HOH A 22 522 127 HOH HOH . I 5 HOH A 23 523 203 HOH HOH . I 5 HOH A 24 524 133 HOH HOH . I 5 HOH A 25 525 120 HOH HOH . I 5 HOH A 26 526 79 HOH HOH . I 5 HOH A 27 527 23 HOH HOH . I 5 HOH A 28 528 22 HOH HOH . I 5 HOH A 29 529 53 HOH HOH . I 5 HOH A 30 530 100 HOH HOH . I 5 HOH A 31 531 59 HOH HOH . I 5 HOH A 32 532 216 HOH HOH . I 5 HOH A 33 533 115 HOH HOH . I 5 HOH A 34 534 138 HOH HOH . I 5 HOH A 35 535 71 HOH HOH . I 5 HOH A 36 536 111 HOH HOH . I 5 HOH A 37 537 122 HOH HOH . I 5 HOH A 38 538 130 HOH HOH . I 5 HOH A 39 539 149 HOH HOH . I 5 HOH A 40 540 44 HOH HOH . I 5 HOH A 41 541 34 HOH HOH . I 5 HOH A 42 542 165 HOH HOH . I 5 HOH A 43 543 32 HOH HOH . I 5 HOH A 44 544 78 HOH HOH . I 5 HOH A 45 545 15 HOH HOH . I 5 HOH A 46 546 200 HOH HOH . I 5 HOH A 47 547 42 HOH HOH . I 5 HOH A 48 548 192 HOH HOH . I 5 HOH A 49 549 66 HOH HOH . I 5 HOH A 50 550 45 HOH HOH . I 5 HOH A 51 551 35 HOH HOH . I 5 HOH A 52 552 112 HOH HOH . I 5 HOH A 53 553 128 HOH HOH . I 5 HOH A 54 554 25 HOH HOH . I 5 HOH A 55 555 129 HOH HOH . I 5 HOH A 56 556 43 HOH HOH . I 5 HOH A 57 557 86 HOH HOH . I 5 HOH A 58 558 73 HOH HOH . I 5 HOH A 59 559 153 HOH HOH . I 5 HOH A 60 560 124 HOH HOH . I 5 HOH A 61 561 54 HOH HOH . I 5 HOH A 62 562 151 HOH HOH . I 5 HOH A 63 563 81 HOH HOH . I 5 HOH A 64 564 95 HOH HOH . I 5 HOH A 65 565 27 HOH HOH . I 5 HOH A 66 566 106 HOH HOH . I 5 HOH A 67 567 210 HOH HOH . I 5 HOH A 68 568 7 HOH HOH . I 5 HOH A 69 569 56 HOH HOH . I 5 HOH A 70 570 64 HOH HOH . I 5 HOH A 71 571 76 HOH HOH . I 5 HOH A 72 572 3 HOH HOH . I 5 HOH A 73 573 121 HOH HOH . I 5 HOH A 74 574 109 HOH HOH . I 5 HOH A 75 575 208 HOH HOH . I 5 HOH A 76 576 29 HOH HOH . I 5 HOH A 77 577 13 HOH HOH . I 5 HOH A 78 578 47 HOH HOH . I 5 HOH A 79 579 161 HOH HOH . I 5 HOH A 80 580 183 HOH HOH . I 5 HOH A 81 581 50 HOH HOH . I 5 HOH A 82 582 33 HOH HOH . I 5 HOH A 83 583 48 HOH HOH . I 5 HOH A 84 584 170 HOH HOH . I 5 HOH A 85 585 139 HOH HOH . I 5 HOH A 86 586 70 HOH HOH . I 5 HOH A 87 587 14 HOH HOH . I 5 HOH A 88 588 90 HOH HOH . I 5 HOH A 89 589 184 HOH HOH . I 5 HOH A 90 590 63 HOH HOH . I 5 HOH A 91 591 96 HOH HOH . I 5 HOH A 92 592 12 HOH HOH . I 5 HOH A 93 593 28 HOH HOH . I 5 HOH A 94 594 18 HOH HOH . I 5 HOH A 95 595 185 HOH HOH . I 5 HOH A 96 596 98 HOH HOH . I 5 HOH A 97 597 137 HOH HOH . I 5 HOH A 98 598 101 HOH HOH . I 5 HOH A 99 599 189 HOH HOH . I 5 HOH A 100 600 74 HOH HOH . I 5 HOH A 101 601 5 HOH HOH . I 5 HOH A 102 602 30 HOH HOH . I 5 HOH A 103 603 2 HOH HOH . I 5 HOH A 104 604 180 HOH HOH . I 5 HOH A 105 605 21 HOH HOH . I 5 HOH A 106 606 188 HOH HOH . I 5 HOH A 107 607 1 HOH HOH . I 5 HOH A 108 608 209 HOH HOH . I 5 HOH A 109 609 75 HOH HOH . I 5 HOH A 110 610 17 HOH HOH . I 5 HOH A 111 611 4 HOH HOH . I 5 HOH A 112 612 196 HOH HOH . I 5 HOH A 113 613 10 HOH HOH . I 5 HOH A 114 614 155 HOH HOH . I 5 HOH A 115 615 118 HOH HOH . I 5 HOH A 116 616 6 HOH HOH . I 5 HOH A 117 617 60 HOH HOH . I 5 HOH A 118 618 117 HOH HOH . I 5 HOH A 119 619 62 HOH HOH . I 5 HOH A 120 620 77 HOH HOH . I 5 HOH A 121 621 125 HOH HOH . I 5 HOH A 122 622 38 HOH HOH . I 5 HOH A 123 623 144 HOH HOH . I 5 HOH A 124 624 152 HOH HOH . I 5 HOH A 125 625 147 HOH HOH . I 5 HOH A 126 626 9 HOH HOH . I 5 HOH A 127 627 207 HOH HOH . I 5 HOH A 128 628 103 HOH HOH . I 5 HOH A 129 629 8 HOH HOH . I 5 HOH A 130 630 40 HOH HOH . I 5 HOH A 131 631 99 HOH HOH . I 5 HOH A 132 632 174 HOH HOH . I 5 HOH A 133 633 217 HOH HOH . I 5 HOH A 134 634 82 HOH HOH . I 5 HOH A 135 635 11 HOH HOH . I 5 HOH A 136 636 83 HOH HOH . I 5 HOH A 137 637 163 HOH HOH . I 5 HOH A 138 638 88 HOH HOH . I 5 HOH A 139 639 89 HOH HOH . I 5 HOH A 140 640 97 HOH HOH . I 5 HOH A 141 641 52 HOH HOH . I 5 HOH A 142 642 119 HOH HOH . I 5 HOH A 143 643 46 HOH HOH . I 5 HOH A 144 644 31 HOH HOH . I 5 HOH A 145 645 26 HOH HOH . I 5 HOH A 146 646 24 HOH HOH . I 5 HOH A 147 647 201 HOH HOH . I 5 HOH A 148 648 190 HOH HOH . I 5 HOH A 149 649 92 HOH HOH . I 5 HOH A 150 650 154 HOH HOH . I 5 HOH A 151 651 68 HOH HOH . I 5 HOH A 152 652 214 HOH HOH . I 5 HOH A 153 653 167 HOH HOH . I 5 HOH A 154 654 213 HOH HOH . I 5 HOH A 155 655 41 HOH HOH . I 5 HOH A 156 656 173 HOH HOH . I 5 HOH A 157 657 94 HOH HOH . I 5 HOH A 158 658 178 HOH HOH . I 5 HOH A 159 659 91 HOH HOH . I 5 HOH A 160 660 134 HOH HOH . I 5 HOH A 161 661 164 HOH HOH . I 5 HOH A 162 662 172 HOH HOH . I 5 HOH A 163 663 16 HOH HOH . I 5 HOH A 164 664 141 HOH HOH . I 5 HOH A 165 665 113 HOH HOH . I 5 HOH A 166 666 108 HOH HOH . I 5 HOH A 167 667 195 HOH HOH . I 5 HOH A 168 668 143 HOH HOH . I 5 HOH A 169 669 218 HOH HOH . I 5 HOH A 170 670 20 HOH HOH . I 5 HOH A 171 671 105 HOH HOH . I 5 HOH A 172 672 157 HOH HOH . I 5 HOH A 173 673 55 HOH HOH . I 5 HOH A 174 674 93 HOH HOH . I 5 HOH A 175 675 19 HOH HOH . I 5 HOH A 176 676 135 HOH HOH . I 5 HOH A 177 677 197 HOH HOH . I 5 HOH A 178 678 211 HOH HOH . I 5 HOH A 179 679 65 HOH HOH . I 5 HOH A 180 680 187 HOH HOH . I 5 HOH A 181 681 145 HOH HOH . I 5 HOH A 182 682 67 HOH HOH . I 5 HOH A 183 683 116 HOH HOH . I 5 HOH A 184 684 162 HOH HOH . I 5 HOH A 185 685 175 HOH HOH . I 5 HOH A 186 686 215 HOH HOH . I 5 HOH A 187 687 107 HOH HOH . I 5 HOH A 188 688 104 HOH HOH . I 5 HOH A 189 689 114 HOH HOH . I 5 HOH A 190 690 177 HOH HOH . I 5 HOH A 191 691 150 HOH HOH . I 5 HOH A 192 692 146 HOH HOH . I 5 HOH A 193 693 176 HOH HOH . I 5 HOH A 194 694 181 HOH HOH . I 5 HOH A 195 695 61 HOH HOH . I 5 HOH A 196 696 182 HOH HOH . I 5 HOH A 197 697 186 HOH HOH . I 5 HOH A 198 698 219 HOH HOH . I 5 HOH A 199 699 193 HOH HOH . I 5 HOH A 200 700 202 HOH HOH . I 5 HOH A 201 701 171 HOH HOH . I 5 HOH A 202 702 87 HOH HOH . I 5 HOH A 203 703 179 HOH HOH . I 5 HOH A 204 704 166 HOH HOH . I 5 HOH A 205 705 136 HOH HOH . I 5 HOH A 206 706 168 HOH HOH . I 5 HOH A 207 707 57 HOH HOH . I 5 HOH A 208 708 204 HOH HOH . I 5 HOH A 209 709 142 HOH HOH . I 5 HOH A 210 710 132 HOH HOH . I 5 HOH A 211 711 51 HOH HOH . I 5 HOH A 212 712 191 HOH HOH . I 5 HOH A 213 713 158 HOH HOH . I 5 HOH A 214 714 194 HOH HOH . I 5 HOH A 215 715 110 HOH HOH . I 5 HOH A 216 716 84 HOH HOH . I 5 HOH A 217 717 198 HOH HOH . I 5 HOH A 218 718 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -25.589 1.624 54.527 1 60.33 ? C1 GOL 405 A 1 HETATM 2 O O1 GOL . . . F 4 -24.359 1.687 55.214 1 59.52 ? O1 GOL 405 A 1 HETATM 3 C C2 GOL . . . F 4 -25.76 2.859 53.649 1 59.69 ? C2 GOL 405 A 1 HETATM 4 O O2 GOL . . . F 4 -26.635 3.768 54.278 1 61.49 ? O2 GOL 405 A 1 HETATM 5 C C3 GOL . . . F 4 -24.409 3.53 53.437 1 54.95 ? C3 GOL 405 A 1 HETATM 6 O O3 GOL . . . F 4 -23.484 2.581 52.953 1 49.99 ? O3 GOL 405 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #