data_5N9X
#
_model_server_result.job_id            R15sCVbI05jwXhddS8MkyQ 
_model_server_result.datetime_utc      '2024-12-26 22:28:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5n9x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    5N9X 
#
_exptl.entry_id    5N9X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              119.119 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            THREONINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.95 
_cell.angle_gamma         90 
_cell.entry_id            5N9X 
_cell.length_a            179.022 
_cell.length_b            52.524 
_cell.length_c            110.119 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5N9X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1 
B,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D O1G ATP . A ATP 602 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc2 D O1B ATP . A ATP 602 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc3 D O3' ATP . A ATP 602 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? 
metalc ? metalc4 E MG MG . A MG 603 1_555 G O HOH . A HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
#
_chem_comp.formula           'C4 H9 N O3' 
_chem_comp.formula_weight    119.119 
_chem_comp.id                THR 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              THREONINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA THR sing 392 n n 
N H THR sing 393 n n 
N H2 THR sing 394 n n 
CA C THR sing 395 n n 
CA CB THR sing 396 n n 
CA HA THR sing 397 n n 
C O THR doub 398 n n 
C OXT THR sing 399 n n 
CB OG1 THR sing 400 n n 
CB CG2 THR sing 401 n n 
CB HB THR sing 402 n n 
OG1 HG1 THR sing 403 n n 
CG2 HG21 THR sing 404 n n 
CG2 HG22 THR sing 405 n n 
CG2 HG23 THR sing 406 n n 
OXT HXT THR sing 407 n n 
#
_atom_sites.entry_id                     5N9X 
_atom_sites.fract_transf_matrix[1][1]    0.005586 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001597 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019039 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009445 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 THR A 1 601 602 THR THR . 
D 3 ATP A 1 602 601 ATP ATP . 
E 4 MG A 1 603 603 MG MG . 
F 5 8QN B 1 601 601 8QN Y4U . 
G 6 HOH A 1 701 2068 HOH HOH . 
G 6 HOH A 2 702 2022 HOH HOH . 
G 6 HOH A 3 703 2053 HOH HOH . 
G 6 HOH A 4 704 2096 HOH HOH . 
G 6 HOH A 5 705 2066 HOH HOH . 
G 6 HOH A 6 706 2081 HOH HOH . 
G 6 HOH A 7 707 2086 HOH HOH . 
G 6 HOH A 8 708 2083 HOH HOH . 
G 6 HOH A 9 709 2044 HOH HOH . 
G 6 HOH A 10 710 2035 HOH HOH . 
G 6 HOH A 11 711 2021 HOH HOH . 
G 6 HOH A 12 712 2108 HOH HOH . 
G 6 HOH A 13 713 2087 HOH HOH . 
G 6 HOH A 14 714 2029 HOH HOH . 
G 6 HOH A 15 715 2097 HOH HOH . 
G 6 HOH A 16 716 2013 HOH HOH . 
G 6 HOH A 17 717 2027 HOH HOH . 
G 6 HOH A 18 718 2073 HOH HOH . 
G 6 HOH A 19 719 2065 HOH HOH . 
G 6 HOH A 20 720 2100 HOH HOH . 
G 6 HOH A 21 721 2033 HOH HOH . 
G 6 HOH A 22 722 2008 HOH HOH . 
G 6 HOH A 23 723 2059 HOH HOH . 
G 6 HOH A 24 724 2001 HOH HOH . 
G 6 HOH A 25 725 2037 HOH HOH . 
G 6 HOH A 26 726 2054 HOH HOH . 
G 6 HOH A 27 727 2038 HOH HOH . 
G 6 HOH A 28 728 2039 HOH HOH . 
G 6 HOH A 29 729 2051 HOH HOH . 
G 6 HOH A 30 730 2093 HOH HOH . 
G 6 HOH A 31 731 2036 HOH HOH . 
G 6 HOH A 32 732 2105 HOH HOH . 
G 6 HOH A 33 733 2025 HOH HOH . 
G 6 HOH A 34 734 2060 HOH HOH . 
G 6 HOH A 35 735 2055 HOH HOH . 
G 6 HOH A 36 736 2002 HOH HOH . 
G 6 HOH A 37 737 2018 HOH HOH . 
G 6 HOH A 38 738 2078 HOH HOH . 
G 6 HOH A 39 739 2085 HOH HOH . 
G 6 HOH A 40 740 2107 HOH HOH . 
G 6 HOH A 41 741 2015 HOH HOH . 
G 6 HOH A 42 742 2056 HOH HOH . 
G 6 HOH A 43 743 2017 HOH HOH . 
G 6 HOH A 44 744 2080 HOH HOH . 
G 6 HOH A 45 745 2076 HOH HOH . 
G 6 HOH A 46 746 2026 HOH HOH . 
G 6 HOH A 47 747 2020 HOH HOH . 
G 6 HOH A 48 748 2058 HOH HOH . 
G 6 HOH A 49 749 2042 HOH HOH . 
G 6 HOH A 50 750 2079 HOH HOH . 
G 6 HOH A 51 751 2019 HOH HOH . 
G 6 HOH A 52 752 2071 HOH HOH . 
G 6 HOH A 53 753 2095 HOH HOH . 
G 6 HOH A 54 754 2040 HOH HOH . 
G 6 HOH A 55 755 2092 HOH HOH . 
G 6 HOH A 56 756 2090 HOH HOH . 
G 6 HOH A 57 757 2043 HOH HOH . 
G 6 HOH A 58 758 2094 HOH HOH . 
G 6 HOH A 59 759 2049 HOH HOH . 
G 6 HOH A 60 760 2057 HOH HOH . 
G 6 HOH A 61 761 2072 HOH HOH . 
G 6 HOH A 62 762 2024 HOH HOH . 
G 6 HOH A 63 763 2061 HOH HOH . 
G 6 HOH A 64 764 2098 HOH HOH . 
G 6 HOH A 65 765 2070 HOH HOH . 
G 6 HOH A 66 766 2064 HOH HOH . 
G 6 HOH A 67 767 2099 HOH HOH . 
G 6 HOH A 68 768 2081 HOH HOH . 
G 6 HOH A 69 769 2028 HOH HOH . 
G 6 HOH A 70 770 2069 HOH HOH . 
G 6 HOH A 71 771 2007 HOH HOH . 
G 6 HOH A 72 772 2032 HOH HOH . 
G 6 HOH A 73 773 2031 HOH HOH . 
G 6 HOH A 74 774 2048 HOH HOH . 
G 6 HOH A 75 775 2014 HOH HOH . 
G 6 HOH A 76 776 2009 HOH HOH . 
G 6 HOH A 77 777 2082 HOH HOH . 
G 6 HOH A 78 778 2030 HOH HOH . 
G 6 HOH A 79 779 2046 HOH HOH . 
G 6 HOH A 80 780 2050 HOH HOH . 
G 6 HOH A 81 781 2090 HOH HOH . 
G 6 HOH A 82 782 2074 HOH HOH . 
G 6 HOH A 83 783 2084 HOH HOH . 
G 6 HOH A 84 784 2104 HOH HOH . 
G 6 HOH A 85 785 2088 HOH HOH . 
G 6 HOH A 86 786 2045 HOH HOH . 
G 6 HOH A 87 787 2034 HOH HOH . 
G 6 HOH A 88 788 2053 HOH HOH . 
G 6 HOH A 89 789 2005 HOH HOH . 
G 6 HOH A 90 790 2052 HOH HOH . 
G 6 HOH A 91 791 2063 HOH HOH . 
G 6 HOH A 92 792 2103 HOH HOH . 
G 6 HOH A 93 793 2006 HOH HOH . 
G 6 HOH A 94 794 2091 HOH HOH . 
G 6 HOH A 95 795 2062 HOH HOH . 
G 6 HOH A 96 796 2041 HOH HOH . 
G 6 HOH A 97 797 2016 HOH HOH . 
G 6 HOH A 98 798 2043 HOH HOH . 
G 6 HOH A 99 799 2089 HOH HOH . 
G 6 HOH A 100 800 2106 HOH HOH . 
G 6 HOH A 101 801 2012 HOH HOH . 
G 6 HOH A 102 802 2101 HOH HOH . 
G 6 HOH A 103 803 2010 HOH HOH . 
G 6 HOH A 104 804 2003 HOH HOH . 
G 6 HOH A 105 805 2047 HOH HOH . 
G 6 HOH A 106 806 2004 HOH HOH . 
G 6 HOH A 107 807 2102 HOH HOH . 
G 6 HOH A 108 808 2067 HOH HOH . 
G 6 HOH A 109 809 2089 HOH HOH . 
G 6 HOH A 110 810 2075 HOH HOH . 
G 6 HOH A 111 811 2084 HOH HOH . 
G 6 HOH A 112 812 2011 HOH HOH . 
G 6 HOH A 113 813 2077 HOH HOH . 
H 6 HOH B 1 701 2056 HOH HOH . 
H 6 HOH B 2 702 2088 HOH HOH . 
H 6 HOH B 3 703 2018 HOH HOH . 
H 6 HOH B 4 704 2077 HOH HOH . 
H 6 HOH B 5 705 2011 HOH HOH . 
H 6 HOH B 6 706 2023 HOH HOH . 
H 6 HOH B 7 707 2062 HOH HOH . 
H 6 HOH B 8 708 2012 HOH HOH . 
H 6 HOH B 9 709 2002 HOH HOH . 
H 6 HOH B 10 710 2068 HOH HOH . 
H 6 HOH B 11 711 2070 HOH HOH . 
H 6 HOH B 12 712 2083 HOH HOH . 
H 6 HOH B 13 713 2060 HOH HOH . 
H 6 HOH B 14 714 2074 HOH HOH . 
H 6 HOH B 15 715 2049 HOH HOH . 
H 6 HOH B 16 716 2058 HOH HOH . 
H 6 HOH B 17 717 2040 HOH HOH . 
H 6 HOH B 18 718 2038 HOH HOH . 
H 6 HOH B 19 719 2031 HOH HOH . 
H 6 HOH B 20 720 2054 HOH HOH . 
H 6 HOH B 21 721 2014 HOH HOH . 
H 6 HOH B 22 722 2051 HOH HOH . 
H 6 HOH B 23 723 2082 HOH HOH . 
H 6 HOH B 24 724 2013 HOH HOH . 
H 6 HOH B 25 725 2055 HOH HOH . 
H 6 HOH B 26 726 2048 HOH HOH . 
H 6 HOH B 27 727 2025 HOH HOH . 
H 6 HOH B 28 728 2041 HOH HOH . 
H 6 HOH B 29 729 2047 HOH HOH . 
H 6 HOH B 30 730 2050 HOH HOH . 
H 6 HOH B 31 731 2037 HOH HOH . 
H 6 HOH B 32 732 2003 HOH HOH . 
H 6 HOH B 33 733 2017 HOH HOH . 
H 6 HOH B 34 734 2006 HOH HOH . 
H 6 HOH B 35 735 2019 HOH HOH . 
H 6 HOH B 36 736 2026 HOH HOH . 
H 6 HOH B 37 737 2034 HOH HOH . 
H 6 HOH B 38 738 2042 HOH HOH . 
H 6 HOH B 39 739 2033 HOH HOH . 
H 6 HOH B 40 740 2066 HOH HOH . 
H 6 HOH B 41 741 2029 HOH HOH . 
H 6 HOH B 42 742 2063 HOH HOH . 
H 6 HOH B 43 743 2015 HOH HOH . 
H 6 HOH B 44 744 2007 HOH HOH . 
H 6 HOH B 45 745 2072 HOH HOH . 
H 6 HOH B 46 746 2009 HOH HOH . 
H 6 HOH B 47 747 2021 HOH HOH . 
H 6 HOH B 48 748 2052 HOH HOH . 
H 6 HOH B 49 749 2004 HOH HOH . 
H 6 HOH B 50 750 2020 HOH HOH . 
H 6 HOH B 51 751 2022 HOH HOH . 
H 6 HOH B 52 752 2044 HOH HOH . 
H 6 HOH B 53 753 2046 HOH HOH . 
H 6 HOH B 54 754 2039 HOH HOH . 
H 6 HOH B 55 755 2065 HOH HOH . 
H 6 HOH B 56 756 2001 HOH HOH . 
H 6 HOH B 57 757 2075 HOH HOH . 
H 6 HOH B 58 758 2005 HOH HOH . 
H 6 HOH B 59 759 2073 HOH HOH . 
H 6 HOH B 60 760 2028 HOH HOH . 
H 6 HOH B 61 761 2027 HOH HOH . 
H 6 HOH B 62 762 2008 HOH HOH . 
H 6 HOH B 63 763 2067 HOH HOH . 
H 6 HOH B 64 764 2079 HOH HOH . 
H 6 HOH B 65 765 2087 HOH HOH . 
H 6 HOH B 66 766 2078 HOH HOH . 
H 6 HOH B 67 767 2032 HOH HOH . 
H 6 HOH B 68 768 2035 HOH HOH . 
H 6 HOH B 69 769 2016 HOH HOH . 
H 6 HOH B 70 770 2080 HOH HOH . 
H 6 HOH B 71 771 2069 HOH HOH . 
H 6 HOH B 72 772 2045 HOH HOH . 
H 6 HOH B 73 773 2030 HOH HOH . 
H 6 HOH B 74 774 2024 HOH HOH . 
H 6 HOH B 75 775 2076 HOH HOH . 
H 6 HOH B 76 776 2059 HOH HOH . 
H 6 HOH B 77 777 2010 HOH HOH . 
H 6 HOH B 78 778 2057 HOH HOH . 
H 6 HOH B 79 779 2036 HOH HOH . 
H 6 HOH B 80 780 2071 HOH HOH . 
H 6 HOH B 81 781 2086 HOH HOH . 
H 6 HOH B 82 782 2064 HOH HOH . 
H 6 HOH B 83 783 2061 HOH HOH . 
H 6 HOH B 84 784 2085 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N THR . . . C 2 14.169 2.23 24.321 1 16.63 ? N THR 601 A 1 
HETATM 2 C CA THR . . . C 2 13.716 0.983 23.687 1 26.72 ? CA THR 601 A 1 
HETATM 3 C C THR . . . C 2 14.532 0.815 22.437 1 28.26 ? C THR 601 A 1 
HETATM 4 O O THR . . . C 2 14.57 -0.195 21.707 1 20.35 ? O THR 601 A 1 
HETATM 5 C CB THR . . . C 2 12.216 1.001 23.309 1 23.24 ? CB THR 601 A 1 
HETATM 6 O OG1 THR . . . C 2 11.902 2.218 22.601 1 19.43 ? OG1 THR 601 A 1 
HETATM 7 C CG2 THR . . . C 2 11.352 0.878 24.558 1 14.32 ? CG2 THR 601 A 1 
HETATM 8 O OXT THR . . . C 2 15.167 1.827 22.174 1 28.08 ? OXT THR 601 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          28 
_model_server_stats.element_count           8 
#