data_5NAD # _model_server_result.job_id 3icPkv3jwKE5-qbUMRLvEQ _model_server_result.datetime_utc '2024-10-18 16:30:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 5NAD # _exptl.entry_id 5NAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 561.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BAY 1217389' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NAD _cell.length_a 70.45 _cell.length_b 109.78 _cell.length_c 114.33 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id TPO _struct_conn.ptnr1_label_seq_id 191 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id TPO _struct_conn.ptnr1_auth_seq_id 686 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id VAL _struct_conn.ptnr2_label_seq_id 192 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id VAL _struct_conn.ptnr2_auth_seq_id 687 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.325 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H24 F5 N5 O3' _chem_comp.formula_weight 561.503 _chem_comp.id 8RH _chem_comp.mon_nstd_flag . _chem_comp.name 'BAY 1217389' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C41 C34 8RH sing 1 n n C41 C42 8RH sing 2 n n C34 C42 8RH sing 3 n n C34 N32 8RH sing 4 n n N32 C31 8RH sing 5 n n C38 O37 8RH sing 6 n n C31 O33 8RH doub 7 n n C31 C27 8RH sing 8 n n O37 C22 8RH sing 9 n n F36 C20 8RH sing 10 n n C30 C25 8RH sing 11 n n C27 C25 8RH doub 12 n y C27 C29 8RH sing 13 n y C22 C20 8RH doub 14 n y C22 C24 8RH sing 15 n y C20 C21 8RH sing 16 n y C25 C26 8RH sing 17 n y C29 C28 8RH doub 18 n y C24 C23 8RH doub 19 n y C21 F35 8RH sing 20 n n C21 C19 8RH doub 21 n y C26 C17 8RH doub 22 n y C28 C17 8RH sing 23 n y C17 C8 8RH sing 24 n n C23 C19 8RH sing 25 n y C19 O18 8RH sing 26 n n C8 N6 8RH sing 27 n y C8 C9 8RH doub 28 n y N5 N6 8RH sing 29 n y N5 C1 8RH doub 30 n y O18 C1 8RH sing 31 n n N6 C4 8RH sing 32 n y C1 C3 8RH sing 33 n y C9 N7 8RH sing 34 n y C4 N7 8RH doub 35 n y C4 C2 8RH sing 36 n y C3 C2 8RH doub 37 n y C2 N10 8RH sing 38 n n N10 C11 8RH sing 39 n n C11 C12 8RH sing 40 n n C12 C13 8RH sing 41 n n F14 C13 8RH sing 42 n n C13 F15 8RH sing 43 n n C13 F16 8RH sing 44 n n C3 H1 8RH sing 45 n n C9 H2 8RH sing 46 n n C11 H3 8RH sing 47 n n C11 H4 8RH sing 48 n n C12 H5 8RH sing 49 n n C12 H6 8RH sing 50 n n C38 H7 8RH sing 51 n n C38 H8 8RH sing 52 n n C38 H9 8RH sing 53 n n C24 H10 8RH sing 54 n n C23 H11 8RH sing 55 n n N10 H12 8RH sing 56 n n C28 H13 8RH sing 57 n n C29 H14 8RH sing 58 n n C30 H15 8RH sing 59 n n C30 H16 8RH sing 60 n n C30 H17 8RH sing 61 n n C26 H18 8RH sing 62 n n N32 H19 8RH sing 63 n n C34 H20 8RH sing 64 n n C42 H21 8RH sing 65 n n C42 H22 8RH sing 66 n n C41 H23 8RH sing 67 n n C41 H24 8RH sing 68 n n # _atom_sites.entry_id 5NAD _atom_sites.fract_transf_matrix[1][1] 0.014194 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008747 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8RH A 1 901 797 8RH NX2 . C 3 HOH A 1 1001 54 HOH HOH . C 3 HOH A 2 1002 17 HOH HOH . C 3 HOH A 3 1003 1 HOH HOH . C 3 HOH A 4 1004 66 HOH HOH . C 3 HOH A 5 1005 30 HOH HOH . C 3 HOH A 6 1006 38 HOH HOH . C 3 HOH A 7 1007 55 HOH HOH . C 3 HOH A 8 1008 52 HOH HOH . C 3 HOH A 9 1009 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8RH . . . B 2 -0.113 37.398 45.935 1 66.59 ? C1 8RH 901 A 1 HETATM 2 C C2 8RH . . . B 2 0.917 35.97 47.512 1 72.87 ? C2 8RH 901 A 1 HETATM 3 C C3 8RH . . . B 2 0.683 37.249 47.039 1 64 ? C3 8RH 901 A 1 HETATM 4 C C8 8RH . . . B 2 -0.864 33.92 45.281 1 62.78 ? C8 8RH 901 A 1 HETATM 5 C C9 8RH . . . B 2 -0.35 32.901 46.078 1 63.91 ? C9 8RH 901 A 1 HETATM 6 C C11 8RH . . . B 2 0.948 35.094 49.675 1 89.95 ? C11 8RH 901 A 1 HETATM 7 C C12 8RH . . . B 2 1.704 35.072 50.984 1 90.78 ? C12 8RH 901 A 1 HETATM 8 C C13 8RH . . . B 2 0.988 35.87 52.05 1 94.24 ? C13 8RH 901 A 1 HETATM 9 O O18 8RH . . . B 2 -0.398 38.643 45.517 1 75.59 ? O18 8RH 901 A 1 HETATM 10 C C20 8RH . . . B 2 -0.546 39.358 41.957 1 86.33 ? C20 8RH 901 A 1 HETATM 11 F F36 8RH . . . B 2 0.346 39.512 40.967 1 123.26 ? F36 8RH 901 A 1 HETATM 12 C C22 8RH . . . B 2 -1.977 39.482 41.765 1 83.75 ? C22 8RH 901 A 1 HETATM 13 O O37 8RH . . . B 2 -2.386 39.767 40.489 1 90.51 ? O37 8RH 901 A 1 HETATM 14 C C38 8RH . . . B 2 -1.575 40.485 39.531 1 92.52 ? C38 8RH 901 A 1 HETATM 15 C C24 8RH . . . B 2 -2.846 39.304 42.862 1 81.62 ? C24 8RH 901 A 1 HETATM 16 C C23 8RH . . . B 2 -2.413 39.008 44.147 1 65.89 ? C23 8RH 901 A 1 HETATM 17 C C19 8RH . . . B 2 -1.061 38.894 44.358 1 74.8 ? C19 8RH 901 A 1 HETATM 18 C C21 8RH . . . B 2 -0.111 39.066 43.296 1 82.42 ? C21 8RH 901 A 1 HETATM 19 F F35 8RH . . . B 2 1.167 38.94 43.637 1 106.76 ? F35 8RH 901 A 1 HETATM 20 N N5 8RH . . . B 2 -0.665 36.34 45.315 1 59.48 ? N5 8RH 901 A 1 HETATM 21 N N6 8RH . . . B 2 -0.409 35.072 45.773 1 58.59 ? N6 8RH 901 A 1 HETATM 22 N N7 8RH . . . B 2 0.402 33.503 47.051 1 64.59 ? N7 8RH 901 A 1 HETATM 23 C C4 8RH . . . B 2 0.365 34.854 46.843 1 67.84 ? C4 8RH 901 A 1 HETATM 24 N N10 8RH . . . B 2 1.717 35.818 48.658 1 82.77 ? N10 8RH 901 A 1 HETATM 25 F F16 8RH . . . B 2 1.758 35.87 53.13 1 111.62 ? F16 8RH 901 A 1 HETATM 26 F F15 8RH . . . B 2 -0.147 35.248 52.325 1 83.81 ? F15 8RH 901 A 1 HETATM 27 F F14 8RH . . . B 2 0.764 37.103 51.591 1 93.38 ? F14 8RH 901 A 1 HETATM 28 C C17 8RH . . . B 2 -1.701 33.949 44.034 1 60.55 ? C17 8RH 901 A 1 HETATM 29 C C28 8RH . . . B 2 -2.034 32.746 43.453 1 66.92 ? C28 8RH 901 A 1 HETATM 30 C C29 8RH . . . B 2 -2.772 32.666 42.278 1 65.04 ? C29 8RH 901 A 1 HETATM 31 C C27 8RH . . . B 2 -3.197 33.796 41.632 1 64.35 ? C27 8RH 901 A 1 HETATM 32 C C25 8RH . . . B 2 -2.834 35.097 42.201 1 66.96 ? C25 8RH 901 A 1 HETATM 33 C C30 8RH . . . B 2 -3.244 36.381 41.516 1 63.66 ? C30 8RH 901 A 1 HETATM 34 C C26 8RH . . . B 2 -2.079 35.112 43.373 1 62.57 ? C26 8RH 901 A 1 HETATM 35 C C31 8RH . . . B 2 -3.976 33.74 40.377 1 66.29 ? C31 8RH 901 A 1 HETATM 36 O O33 8RH . . . B 2 -5.156 33.993 40.38 1 83.46 ? O33 8RH 901 A 1 HETATM 37 N N32 8RH . . . B 2 -3.333 33.463 39.215 1 70.92 ? N32 8RH 901 A 1 HETATM 38 C C34 8RH . . . B 2 -4.265 33.12 38.124 1 71.41 ? C34 8RH 901 A 1 HETATM 39 C C42 8RH . . . B 2 -4.882 31.731 38.212 1 65.39 ? C42 8RH 901 A 1 HETATM 40 C C41 8RH . . . B 2 -3.788 32.031 37.168 1 67.43 ? C41 8RH 901 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #