data_5NAL # _model_server_result.job_id I_Stm5pEU55Y9E5md4ZgCw _model_server_result.datetime_utc '2025-03-17 15:26:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5NAL # _exptl.entry_id 5NAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 664.318 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}4-[(4-chlorophenyl)methyl]-~{N}1-(cyclohexylmethyl)-~{N}4-cyclopentyl-~{N}1-[(~{Z})-4-[(~{E})-methyliminomethyl]-5-oxidanyl-hex-4-enyl]benzene-1,4-disulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NAL _cell.length_a 56.07 _cell.length_b 56.07 _cell.length_c 115.08 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OE2 _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 88 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 88 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CBH _struct_conn.ptnr2_label_comp_id 8RQ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id 8RQ _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.381 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C33 H46 Cl N3 O5 S2' _chem_comp.formula_weight 664.318 _chem_comp.id 8RQ _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}4-[(4-chlorophenyl)methyl]-~{N}1-(cyclohexylmethyl)-~{N}4-cyclopentyl-~{N}1-[(~{Z})-4-[(~{E})-methyliminomethyl]-5-oxidanyl-hex-4-enyl]benzene-1,4-disulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBF CBE 8RQ sing 1 n n OBG CBE 8RQ sing 2 n n CBE CBD 8RQ doub 3 z n OAJ SAG 8RQ doub 4 n n CBD CBC 8RQ sing 5 n n CBD CBH 8RQ sing 6 n n CBB CBC 8RQ sing 7 n n CBB CBA 8RQ sing 8 n n CBH NBI 8RQ doub 9 n n CAX CAW 8RQ sing 10 n n CAX CAY 8RQ sing 11 n n OAI SAG 8RQ doub 12 n n NBI CBR 8RQ sing 13 n n SAG NBQ 8RQ sing 14 n n SAG CAF 8RQ sing 15 n n CBA NBQ 8RQ sing 16 n n CAW CAV 8RQ sing 17 n n CAY CAP 8RQ sing 18 n n NBQ CBP 8RQ sing 19 n n CBP CBO 8RQ sing 20 n n CAA CAF 8RQ doub 21 n y CAA CAB 8RQ sing 22 n y CAF CAE 8RQ sing 23 n y CAB CAC 8RQ doub 24 n y CAV CAP 8RQ sing 25 n n CAE CAD 8RQ doub 26 n y CAP NAO 8RQ sing 27 n n CBN CBO 8RQ sing 28 n n CBN CBM 8RQ sing 29 n n CBO CBJ 8RQ sing 30 n n CAN NAO 8RQ sing 31 n n CAN CAM 8RQ sing 32 n n CAC CAD 8RQ sing 33 n y CAC SAH 8RQ sing 34 n n NAO SAH 8RQ sing 35 n n CAQ CAM 8RQ doub 36 n y CAQ CAR 8RQ sing 37 n y CAM CAU 8RQ sing 38 n y CBM CBL 8RQ sing 39 n n CBJ CBK 8RQ sing 40 n n SAH OAL 8RQ doub 41 n n SAH OAK 8RQ doub 42 n n CAR CAS 8RQ doub 43 n y CBL CBK 8RQ sing 44 n n CAU CAT 8RQ doub 45 n y CAS CAT 8RQ sing 46 n y CAS CL1 8RQ sing 47 n n CBJ H1 8RQ sing 48 n n CBJ H2 8RQ sing 49 n n CBK H3 8RQ sing 50 n n CBK H4 8RQ sing 51 n n CBL H5 8RQ sing 52 n n CBL H6 8RQ sing 53 n n CBM H7 8RQ sing 54 n n CBM H8 8RQ sing 55 n n CBN H9 8RQ sing 56 n n CBN H10 8RQ sing 57 n n CBO H11 8RQ sing 58 n n CBP H12 8RQ sing 59 n n CBP H13 8RQ sing 60 n n CBA H14 8RQ sing 61 n n CBA H15 8RQ sing 62 n n CBB H16 8RQ sing 63 n n CBB H17 8RQ sing 64 n n CBC H18 8RQ sing 65 n n CBC H19 8RQ sing 66 n n CBF H20 8RQ sing 67 n n CBF H21 8RQ sing 68 n n CBF H22 8RQ sing 69 n n OBG H23 8RQ sing 70 n n CBH H24 8RQ sing 71 n n CBR H25 8RQ sing 72 n n CBR H26 8RQ sing 73 n n CBR H27 8RQ sing 74 n n CAE H28 8RQ sing 75 n n CAD H29 8RQ sing 76 n n CAA H30 8RQ sing 77 n n CAB H31 8RQ sing 78 n n CAP H32 8RQ sing 79 n n CAV H33 8RQ sing 80 n n CAV H34 8RQ sing 81 n n CAW H35 8RQ sing 82 n n CAW H36 8RQ sing 83 n n CAX H37 8RQ sing 84 n n CAX H38 8RQ sing 85 n n CAY H39 8RQ sing 86 n n CAY H40 8RQ sing 87 n n CAN H41 8RQ sing 88 n n CAN H42 8RQ sing 89 n n CAQ H43 8RQ sing 90 n n CAR H44 8RQ sing 91 n n CAT H45 8RQ sing 92 n n CAU H46 8RQ sing 93 n n # _atom_sites.entry_id 5NAL _atom_sites.fract_transf_matrix[1][1] 0.017835 _atom_sites.fract_transf_matrix[1][2] 0.010297 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8RQ B 1 201 1 8RQ DRG . C 3 HOH B 1 301 16 HOH HOH . C 3 HOH B 2 302 76 HOH HOH . C 3 HOH B 3 303 59 HOH HOH . C 3 HOH B 4 304 39 HOH HOH . C 3 HOH B 5 305 89 HOH HOH . C 3 HOH B 6 306 58 HOH HOH . C 3 HOH B 7 307 88 HOH HOH . C 3 HOH B 8 308 30 HOH HOH . C 3 HOH B 9 309 15 HOH HOH . C 3 HOH B 10 310 33 HOH HOH . C 3 HOH B 11 311 40 HOH HOH . C 3 HOH B 12 312 64 HOH HOH . C 3 HOH B 13 313 60 HOH HOH . C 3 HOH B 14 314 9 HOH HOH . C 3 HOH B 15 315 7 HOH HOH . C 3 HOH B 16 316 75 HOH HOH . C 3 HOH B 17 317 69 HOH HOH . C 3 HOH B 18 318 10 HOH HOH . C 3 HOH B 19 319 38 HOH HOH . C 3 HOH B 20 320 73 HOH HOH . C 3 HOH B 21 321 27 HOH HOH . C 3 HOH B 22 322 74 HOH HOH . C 3 HOH B 23 323 97 HOH HOH . C 3 HOH B 24 324 50 HOH HOH . C 3 HOH B 25 325 52 HOH HOH . C 3 HOH B 26 326 29 HOH HOH . C 3 HOH B 27 327 26 HOH HOH . C 3 HOH B 28 328 44 HOH HOH . C 3 HOH B 29 329 61 HOH HOH . C 3 HOH B 30 330 1 HOH HOH . C 3 HOH B 31 331 24 HOH HOH . C 3 HOH B 32 332 8 HOH HOH . C 3 HOH B 33 333 12 HOH HOH . C 3 HOH B 34 334 36 HOH HOH . C 3 HOH B 35 335 87 HOH HOH . C 3 HOH B 36 336 54 HOH HOH . C 3 HOH B 37 337 3 HOH HOH . C 3 HOH B 38 338 62 HOH HOH . C 3 HOH B 39 339 48 HOH HOH . C 3 HOH B 40 340 78 HOH HOH . C 3 HOH B 41 341 71 HOH HOH . C 3 HOH B 42 342 99 HOH HOH . C 3 HOH B 43 343 53 HOH HOH . C 3 HOH B 44 344 14 HOH HOH . C 3 HOH B 45 345 34 HOH HOH . C 3 HOH B 46 346 66 HOH HOH . C 3 HOH B 47 347 70 HOH HOH . C 3 HOH B 48 348 47 HOH HOH . C 3 HOH B 49 349 49 HOH HOH . C 3 HOH B 50 350 11 HOH HOH . C 3 HOH B 51 351 86 HOH HOH . C 3 HOH B 52 352 65 HOH HOH . C 3 HOH B 53 353 80 HOH HOH . C 3 HOH B 54 354 2 HOH HOH . C 3 HOH B 55 355 55 HOH HOH . C 3 HOH B 56 356 96 HOH HOH . C 3 HOH B 57 357 6 HOH HOH . C 3 HOH B 58 358 18 HOH HOH . C 3 HOH B 59 359 35 HOH HOH . C 3 HOH B 60 360 81 HOH HOH . C 3 HOH B 61 361 28 HOH HOH . C 3 HOH B 62 362 77 HOH HOH . C 3 HOH B 63 363 17 HOH HOH . C 3 HOH B 64 364 4 HOH HOH . C 3 HOH B 65 365 85 HOH HOH . C 3 HOH B 66 366 63 HOH HOH . C 3 HOH B 67 367 90 HOH HOH . C 3 HOH B 68 368 68 HOH HOH . C 3 HOH B 69 369 84 HOH HOH . C 3 HOH B 70 370 19 HOH HOH . C 3 HOH B 71 371 72 HOH HOH . C 3 HOH B 72 372 37 HOH HOH . C 3 HOH B 73 373 20 HOH HOH . C 3 HOH B 74 374 31 HOH HOH . C 3 HOH B 75 375 82 HOH HOH . C 3 HOH B 76 376 25 HOH HOH . C 3 HOH B 77 377 98 HOH HOH . C 3 HOH B 78 378 93 HOH HOH . C 3 HOH B 79 379 95 HOH HOH . C 3 HOH B 80 380 92 HOH HOH . C 3 HOH B 81 381 46 HOH HOH . C 3 HOH B 82 382 57 HOH HOH . C 3 HOH B 83 383 83 HOH HOH . C 3 HOH B 84 384 21 HOH HOH . C 3 HOH B 85 385 56 HOH HOH . C 3 HOH B 86 386 79 HOH HOH . C 3 HOH B 87 387 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBJ 8RQ . . . B 2 -17.42 2.409 -13.016 1 46.43 ? CBJ 8RQ 201 B 1 HETATM 2 C CBK 8RQ . . . B 2 -16.666 2.487 -11.749 1 46.63 ? CBK 8RQ 201 B 1 HETATM 3 C CBL 8RQ . . . B 2 -15.224 2.044 -11.917 1 47.13 ? CBL 8RQ 201 B 1 HETATM 4 C CBM 8RQ . . . B 2 -14.524 2.753 -13.037 1 47.92 ? CBM 8RQ 201 B 1 HETATM 5 C CBN 8RQ . . . B 2 -15.187 2.372 -14.307 1 44.39 ? CBN 8RQ 201 B 1 HETATM 6 C CBO 8RQ . . . B 2 -16.624 2.861 -14.266 1 43.66 ? CBO 8RQ 201 B 1 HETATM 7 C CBP 8RQ . . . B 2 -17.283 2.252 -15.497 1 42.56 ? CBP 8RQ 201 B 1 HETATM 8 N NBQ 8RQ . . . B 2 -18.735 2.523 -15.547 1 36.72 ? NBQ 8RQ 201 B 1 HETATM 9 C CBA 8RQ . . . B 2 -19.547 1.357 -15.956 1 39.05 ? CBA 8RQ 201 B 1 HETATM 10 C CBB 8RQ . . . B 2 -19.109 0.861 -17.324 1 43.92 ? CBB 8RQ 201 B 1 HETATM 11 C CBC 8RQ . . . B 2 -18.554 -0.557 -17.276 1 50.79 ? CBC 8RQ 201 B 1 HETATM 12 C CBD 8RQ . . . B 2 -19.515 -1.751 -17.633 1 57.07 ? CBD 8RQ 201 B 1 HETATM 13 C CBE 8RQ . . . B 2 -20.778 -1.671 -18.527 1 61.82 ? CBE 8RQ 201 B 1 HETATM 14 C CBF 8RQ . . . B 2 -21.321 -0.416 -19.178 1 63.34 ? CBF 8RQ 201 B 1 HETATM 15 O OBG 8RQ . . . B 2 -21.493 -2.801 -18.757 1 65.53 ? OBG 8RQ 201 B 1 HETATM 16 C CBH 8RQ . . . B 2 -19.269 -3.168 -17.037 1 62.11 ? CBH 8RQ 201 B 1 HETATM 17 N NBI 8RQ . . . B 2 -18.141 -3.509 -16.4 1 66.31 ? NBI 8RQ 201 B 1 HETATM 18 C CBR 8RQ . . . B 2 -18.004 -4.921 -15.967 1 67.92 ? CBR 8RQ 201 B 1 HETATM 19 S SAG 8RQ . . . B 2 -19.032 4.072 -16.363 1 30.4 ? SAG 8RQ 201 B 1 HETATM 20 O OAI 8RQ . . . B 2 -17.793 4.932 -16.425 1 31.75 ? OAI 8RQ 201 B 1 HETATM 21 O OAJ 8RQ . . . B 2 -19.585 3.829 -17.742 1 29.71 ? OAJ 8RQ 201 B 1 HETATM 22 C CAF 8RQ . . . B 2 -20.156 4.874 -15.376 1 28.81 ? CAF 8RQ 201 B 1 HETATM 23 C CAE 8RQ . . . B 2 -19.751 5.821 -14.426 1 26.94 ? CAE 8RQ 201 B 1 HETATM 24 C CAD 8RQ . . . B 2 -20.691 6.471 -13.626 1 25.71 ? CAD 8RQ 201 B 1 HETATM 25 C CAA 8RQ . . . B 2 -21.498 4.544 -15.495 1 27.17 ? CAA 8RQ 201 B 1 HETATM 26 C CAB 8RQ . . . B 2 -22.44 5.201 -14.691 1 27.47 ? CAB 8RQ 201 B 1 HETATM 27 C CAC 8RQ . . . B 2 -22.043 6.15 -13.752 1 26.02 ? CAC 8RQ 201 B 1 HETATM 28 S SAH 8RQ . . . B 2 -23.25 6.932 -12.794 1 24.94 ? SAH 8RQ 201 B 1 HETATM 29 O OAK 8RQ . . . B 2 -22.502 7.617 -11.669 1 25.94 ? OAK 8RQ 201 B 1 HETATM 30 O OAL 8RQ . . . B 2 -24.248 5.908 -12.265 1 24.36 ? OAL 8RQ 201 B 1 HETATM 31 N NAO 8RQ . . . B 2 -24.075 8.117 -13.613 1 24.94 ? NAO 8RQ 201 B 1 HETATM 32 C CAP 8RQ . . . B 2 -23.226 9.034 -14.404 1 25.09 ? CAP 8RQ 201 B 1 HETATM 33 C CAV 8RQ . . . B 2 -23.914 10.395 -14.478 1 25.59 ? CAV 8RQ 201 B 1 HETATM 34 C CAW 8RQ . . . B 2 -23.718 10.79 -15.947 1 25.24 ? CAW 8RQ 201 B 1 HETATM 35 C CAX 8RQ . . . B 2 -22.669 9.907 -16.49 1 25.56 ? CAX 8RQ 201 B 1 HETATM 36 C CAY 8RQ . . . B 2 -22.922 8.604 -15.819 1 25.28 ? CAY 8RQ 201 B 1 HETATM 37 C CAN 8RQ . . . B 2 -25.409 7.763 -14.158 1 26.15 ? CAN 8RQ 201 B 1 HETATM 38 C CAM 8RQ . . . B 2 -26.341 8.252 -13.167 1 26.96 ? CAM 8RQ 201 B 1 HETATM 39 C CAQ 8RQ . . . B 2 -27.701 8.199 -13.46 1 27.64 ? CAQ 8RQ 201 B 1 HETATM 40 C CAR 8RQ . . . B 2 -28.669 8.658 -12.551 1 28.68 ? CAR 8RQ 201 B 1 HETATM 41 C CAS 8RQ . . . B 2 -28.263 9.172 -11.323 1 30.36 ? CAS 8RQ 201 B 1 HETATM 42 CL CL1 8RQ . . . B 2 -29.405 9.706 -10.191 1 37.51 ? CL1 8RQ 201 B 1 HETATM 43 C CAT 8RQ . . . B 2 -26.913 9.219 -10.984 1 29.08 ? CAT 8RQ 201 B 1 HETATM 44 C CAU 8RQ . . . B 2 -25.962 8.785 -11.903 1 27.84 ? CAU 8RQ 201 B 1 # _model_server_stats.io_time_ms 226 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #