data_5NAT # _model_server_result.job_id bl5v732rSP3qPOqyyiiheA _model_server_result.datetime_utc '2024-11-23 04:32:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5NAT # _exptl.entry_id 5NAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.02 _cell.angle_gamma 90 _cell.entry_id 5NAT _cell.length_a 39.438 _cell.length_b 49.676 _cell.length_c 55.562 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 123 A CYS 136 1_555 A SG CYS 189 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 A SG CYS 154 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 179 A CYS 191 1_555 A SG CYS 204 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 185 n n C1 C2 GOL sing 186 n n C1 H11 GOL sing 187 n n C1 H12 GOL sing 188 n n O1 HO1 GOL sing 189 n n C2 O2 GOL sing 190 n n C2 C3 GOL sing 191 n n C2 H2 GOL sing 192 n n O2 HO2 GOL sing 193 n n C3 O3 GOL sing 194 n n C3 H31 GOL sing 195 n n C3 H32 GOL sing 196 n n O3 HO3 GOL sing 197 n n # _atom_sites.entry_id 5NAT _atom_sites.fract_transf_matrix[1][1] 0.025356 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007278 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 2 GOL A 1 302 2 GOL GOL . D 3 8RT A 1 303 1 8RT LI1 . E 4 HOH A 1 401 235 HOH HOH . E 4 HOH A 2 402 209 HOH HOH . E 4 HOH A 3 403 153 HOH HOH . E 4 HOH A 4 404 41 HOH HOH . E 4 HOH A 5 405 30 HOH HOH . E 4 HOH A 6 406 24 HOH HOH . E 4 HOH A 7 407 89 HOH HOH . E 4 HOH A 8 408 82 HOH HOH . E 4 HOH A 9 409 181 HOH HOH . E 4 HOH A 10 410 67 HOH HOH . E 4 HOH A 11 411 195 HOH HOH . E 4 HOH A 12 412 43 HOH HOH . E 4 HOH A 13 413 110 HOH HOH . E 4 HOH A 14 414 136 HOH HOH . E 4 HOH A 15 415 251 HOH HOH . E 4 HOH A 16 416 56 HOH HOH . E 4 HOH A 17 417 191 HOH HOH . E 4 HOH A 18 418 243 HOH HOH . E 4 HOH A 19 419 219 HOH HOH . E 4 HOH A 20 420 77 HOH HOH . E 4 HOH A 21 421 205 HOH HOH . E 4 HOH A 22 422 23 HOH HOH . E 4 HOH A 23 423 42 HOH HOH . E 4 HOH A 24 424 22 HOH HOH . E 4 HOH A 25 425 8 HOH HOH . E 4 HOH A 26 426 7 HOH HOH . E 4 HOH A 27 427 31 HOH HOH . E 4 HOH A 28 428 185 HOH HOH . E 4 HOH A 29 429 168 HOH HOH . E 4 HOH A 30 430 12 HOH HOH . E 4 HOH A 31 431 32 HOH HOH . E 4 HOH A 32 432 15 HOH HOH . E 4 HOH A 33 433 9 HOH HOH . E 4 HOH A 34 434 213 HOH HOH . E 4 HOH A 35 435 162 HOH HOH . E 4 HOH A 36 436 150 HOH HOH . E 4 HOH A 37 437 3 HOH HOH . E 4 HOH A 38 438 176 HOH HOH . E 4 HOH A 39 439 179 HOH HOH . E 4 HOH A 40 440 70 HOH HOH . E 4 HOH A 41 441 133 HOH HOH . E 4 HOH A 42 442 39 HOH HOH . E 4 HOH A 43 443 60 HOH HOH . E 4 HOH A 44 444 199 HOH HOH . E 4 HOH A 45 445 52 HOH HOH . E 4 HOH A 46 446 183 HOH HOH . E 4 HOH A 47 447 246 HOH HOH . E 4 HOH A 48 448 139 HOH HOH . E 4 HOH A 49 449 160 HOH HOH . E 4 HOH A 50 450 95 HOH HOH . E 4 HOH A 51 451 255 HOH HOH . E 4 HOH A 52 452 203 HOH HOH . E 4 HOH A 53 453 88 HOH HOH . E 4 HOH A 54 454 118 HOH HOH . E 4 HOH A 55 455 91 HOH HOH . E 4 HOH A 56 456 111 HOH HOH . E 4 HOH A 57 457 247 HOH HOH . E 4 HOH A 58 458 4 HOH HOH . E 4 HOH A 59 459 177 HOH HOH . E 4 HOH A 60 460 216 HOH HOH . E 4 HOH A 61 461 126 HOH HOH . E 4 HOH A 62 462 92 HOH HOH . E 4 HOH A 63 463 35 HOH HOH . E 4 HOH A 64 464 180 HOH HOH . E 4 HOH A 65 465 48 HOH HOH . E 4 HOH A 66 466 174 HOH HOH . E 4 HOH A 67 467 93 HOH HOH . E 4 HOH A 68 468 26 HOH HOH . E 4 HOH A 69 469 50 HOH HOH . E 4 HOH A 70 470 54 HOH HOH . E 4 HOH A 71 471 164 HOH HOH . E 4 HOH A 72 472 6 HOH HOH . E 4 HOH A 73 473 115 HOH HOH . E 4 HOH A 74 474 14 HOH HOH . E 4 HOH A 75 475 10 HOH HOH . E 4 HOH A 76 476 25 HOH HOH . E 4 HOH A 77 477 212 HOH HOH . E 4 HOH A 78 478 18 HOH HOH . E 4 HOH A 79 479 28 HOH HOH . E 4 HOH A 80 480 58 HOH HOH . E 4 HOH A 81 481 172 HOH HOH . E 4 HOH A 82 482 214 HOH HOH . E 4 HOH A 83 483 109 HOH HOH . E 4 HOH A 84 484 147 HOH HOH . E 4 HOH A 85 485 90 HOH HOH . E 4 HOH A 86 486 79 HOH HOH . E 4 HOH A 87 487 2 HOH HOH . E 4 HOH A 88 488 140 HOH HOH . E 4 HOH A 89 489 17 HOH HOH . E 4 HOH A 90 490 34 HOH HOH . E 4 HOH A 91 491 193 HOH HOH . E 4 HOH A 92 492 75 HOH HOH . E 4 HOH A 93 493 16 HOH HOH . E 4 HOH A 94 494 145 HOH HOH . E 4 HOH A 95 495 152 HOH HOH . E 4 HOH A 96 496 19 HOH HOH . E 4 HOH A 97 497 11 HOH HOH . E 4 HOH A 98 498 73 HOH HOH . E 4 HOH A 99 499 27 HOH HOH . E 4 HOH A 100 500 161 HOH HOH . E 4 HOH A 101 501 122 HOH HOH . E 4 HOH A 102 502 44 HOH HOH . E 4 HOH A 103 503 63 HOH HOH . E 4 HOH A 104 504 204 HOH HOH . E 4 HOH A 105 505 141 HOH HOH . E 4 HOH A 106 506 84 HOH HOH . E 4 HOH A 107 507 21 HOH HOH . E 4 HOH A 108 508 119 HOH HOH . E 4 HOH A 109 509 5 HOH HOH . E 4 HOH A 110 510 94 HOH HOH . E 4 HOH A 111 511 175 HOH HOH . E 4 HOH A 112 512 146 HOH HOH . E 4 HOH A 113 513 102 HOH HOH . E 4 HOH A 114 514 187 HOH HOH . E 4 HOH A 115 515 178 HOH HOH . E 4 HOH A 116 516 186 HOH HOH . E 4 HOH A 117 517 197 HOH HOH . E 4 HOH A 118 518 13 HOH HOH . E 4 HOH A 119 519 1 HOH HOH . E 4 HOH A 120 520 113 HOH HOH . E 4 HOH A 121 521 45 HOH HOH . E 4 HOH A 122 522 68 HOH HOH . E 4 HOH A 123 523 106 HOH HOH . E 4 HOH A 124 524 120 HOH HOH . E 4 HOH A 125 525 155 HOH HOH . E 4 HOH A 126 526 225 HOH HOH . E 4 HOH A 127 527 33 HOH HOH . E 4 HOH A 128 528 137 HOH HOH . E 4 HOH A 129 529 189 HOH HOH . E 4 HOH A 130 530 142 HOH HOH . E 4 HOH A 131 531 151 HOH HOH . E 4 HOH A 132 532 86 HOH HOH . E 4 HOH A 133 533 98 HOH HOH . E 4 HOH A 134 534 72 HOH HOH . E 4 HOH A 135 535 116 HOH HOH . E 4 HOH A 136 536 71 HOH HOH . E 4 HOH A 137 537 196 HOH HOH . E 4 HOH A 138 538 37 HOH HOH . E 4 HOH A 139 539 127 HOH HOH . E 4 HOH A 140 540 188 HOH HOH . E 4 HOH A 141 541 138 HOH HOH . E 4 HOH A 142 542 57 HOH HOH . E 4 HOH A 143 543 182 HOH HOH . E 4 HOH A 144 544 215 HOH HOH . E 4 HOH A 145 545 36 HOH HOH . E 4 HOH A 146 546 101 HOH HOH . E 4 HOH A 147 547 201 HOH HOH . E 4 HOH A 148 548 64 HOH HOH . E 4 HOH A 149 549 20 HOH HOH . E 4 HOH A 150 550 224 HOH HOH . E 4 HOH A 151 551 226 HOH HOH . E 4 HOH A 152 552 83 HOH HOH . E 4 HOH A 153 553 163 HOH HOH . E 4 HOH A 154 554 245 HOH HOH . E 4 HOH A 155 555 87 HOH HOH . E 4 HOH A 156 556 80 HOH HOH . E 4 HOH A 157 557 53 HOH HOH . E 4 HOH A 158 558 69 HOH HOH . E 4 HOH A 159 559 38 HOH HOH . E 4 HOH A 160 560 149 HOH HOH . E 4 HOH A 161 561 112 HOH HOH . E 4 HOH A 162 562 76 HOH HOH . E 4 HOH A 163 563 218 HOH HOH . E 4 HOH A 164 564 217 HOH HOH . E 4 HOH A 165 565 40 HOH HOH . E 4 HOH A 166 566 49 HOH HOH . E 4 HOH A 167 567 242 HOH HOH . E 4 HOH A 168 568 100 HOH HOH . E 4 HOH A 169 569 97 HOH HOH . E 4 HOH A 170 570 158 HOH HOH . E 4 HOH A 171 571 173 HOH HOH . E 4 HOH A 172 572 59 HOH HOH . E 4 HOH A 173 573 99 HOH HOH . E 4 HOH A 174 574 104 HOH HOH . E 4 HOH A 175 575 125 HOH HOH . E 4 HOH A 176 576 46 HOH HOH . E 4 HOH A 177 577 254 HOH HOH . E 4 HOH A 178 578 135 HOH HOH . E 4 HOH A 179 579 244 HOH HOH . E 4 HOH A 180 580 62 HOH HOH . E 4 HOH A 181 581 148 HOH HOH . E 4 HOH A 182 582 85 HOH HOH . E 4 HOH A 183 583 51 HOH HOH . E 4 HOH A 184 584 159 HOH HOH . E 4 HOH A 185 585 157 HOH HOH . E 4 HOH A 186 586 221 HOH HOH . E 4 HOH A 187 587 96 HOH HOH . E 4 HOH A 188 588 154 HOH HOH . E 4 HOH A 189 589 65 HOH HOH . E 4 HOH A 190 590 249 HOH HOH . E 4 HOH A 191 591 114 HOH HOH . E 4 HOH A 192 592 222 HOH HOH . E 4 HOH A 193 593 134 HOH HOH . E 4 HOH A 194 594 169 HOH HOH . E 4 HOH A 195 595 129 HOH HOH . E 4 HOH A 196 596 167 HOH HOH . E 4 HOH A 197 597 156 HOH HOH . E 4 HOH A 198 598 202 HOH HOH . E 4 HOH A 199 599 103 HOH HOH . E 4 HOH A 200 600 240 HOH HOH . E 4 HOH A 201 601 166 HOH HOH . E 4 HOH A 202 602 78 HOH HOH . E 4 HOH A 203 603 248 HOH HOH . E 4 HOH A 204 604 223 HOH HOH . E 4 HOH A 205 605 261 HOH HOH . E 4 HOH A 206 606 231 HOH HOH . E 4 HOH A 207 607 105 HOH HOH . E 4 HOH A 208 608 256 HOH HOH . E 4 HOH A 209 609 170 HOH HOH . E 4 HOH A 210 610 144 HOH HOH . E 4 HOH A 211 611 66 HOH HOH . E 4 HOH A 212 612 184 HOH HOH . E 4 HOH A 213 613 131 HOH HOH . E 4 HOH A 214 614 227 HOH HOH . E 4 HOH A 215 615 234 HOH HOH . E 4 HOH A 216 616 238 HOH HOH . E 4 HOH A 217 617 241 HOH HOH . E 4 HOH A 218 618 260 HOH HOH . E 4 HOH A 219 619 237 HOH HOH . E 4 HOH A 220 620 171 HOH HOH . E 4 HOH A 221 621 128 HOH HOH . E 4 HOH A 222 622 124 HOH HOH . E 4 HOH A 223 623 230 HOH HOH . E 4 HOH A 224 624 229 HOH HOH . E 4 HOH A 225 625 190 HOH HOH . E 4 HOH A 226 626 232 HOH HOH . E 4 HOH A 227 627 81 HOH HOH . E 4 HOH A 228 628 74 HOH HOH . E 4 HOH A 229 629 47 HOH HOH . E 4 HOH A 230 630 121 HOH HOH . E 4 HOH A 231 631 200 HOH HOH . E 4 HOH A 232 632 211 HOH HOH . E 4 HOH A 233 633 252 HOH HOH . E 4 HOH A 234 634 143 HOH HOH . E 4 HOH A 235 635 132 HOH HOH . E 4 HOH A 236 636 233 HOH HOH . E 4 HOH A 237 637 108 HOH HOH . E 4 HOH A 238 638 236 HOH HOH . E 4 HOH A 239 639 130 HOH HOH . E 4 HOH A 240 640 257 HOH HOH . E 4 HOH A 241 641 29 HOH HOH . E 4 HOH A 242 642 253 HOH HOH . E 4 HOH A 243 643 165 HOH HOH . E 4 HOH A 244 644 239 HOH HOH . E 4 HOH A 245 645 206 HOH HOH . E 4 HOH A 246 646 61 HOH HOH . E 4 HOH A 247 647 117 HOH HOH . E 4 HOH A 248 648 192 HOH HOH . E 4 HOH A 249 649 228 HOH HOH . E 4 HOH A 250 650 194 HOH HOH . E 4 HOH A 251 651 198 HOH HOH . E 4 HOH A 252 652 210 HOH HOH . E 4 HOH A 253 653 208 HOH HOH . E 4 HOH A 254 654 250 HOH HOH . E 4 HOH A 255 655 107 HOH HOH . E 4 HOH A 256 656 258 HOH HOH . E 4 HOH A 257 657 207 HOH HOH . E 4 HOH A 258 658 259 HOH HOH . E 4 HOH A 259 659 55 HOH HOH . E 4 HOH A 260 660 123 HOH HOH . E 4 HOH A 261 661 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 2.231 14.008 11.357 1 21.7 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 2 2.235 15.394 11.627 1 29.57 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 2 3.504 13.377 11.906 1 26.11 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 2 4.512 14.348 12.084 1 30.53 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 2 3.213 12.656 13.222 1 25.02 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 2 2.615 13.503 14.184 1 23.63 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #