data_5NAZ # _model_server_result.job_id hTlkaUo7bUVfcK3rFd27Zg _model_server_result.datetime_utc '2024-11-14 17:33:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5naz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5NAZ # _exptl.entry_id 5NAZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NAZ _cell.length_a 121.283 _cell.length_b 121.283 _cell.length_c 121.283 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NAZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -60.6415 -60.6415 3 'crystal symmetry operation' 11_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 60.6415 -60.6415 0 4 'crystal symmetry operation' 14_444 -y-1/4,-x-1/4,-z-1/4 0 -1 0 -1 0 0 0 0 -1 -30.32075 -30.32075 -30.32075 5 'crystal symmetry operation' 18_545 -x+1/4,z-1/4,y+1/4 -1 0 0 0 0 1 0 1 0 30.32075 -30.32075 30.32075 6 'crystal symmetry operation' 22_544 z+1/4,-y-3/4,x-1/4 0 0 1 0 -1 0 1 0 0 30.32075 -90.96225 -30.32075 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 20 1_555 A SG CYS 111 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 53 A CYS 53 1_555 A SG CYS 108 A CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf3 A SG CYS 65 A CYS 65 1_555 A SG CYS 71 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf4 A SG CYS 130 A CYS 130 1_555 A SG CYS 225 A CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf5 A SG CYS 164 A CYS 164 1_555 A SG CYS 222 A CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 A SG CYS 176 A CYS 176 1_555 A SG CYS 182 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 237 n n O1 HO1 PG4 sing 238 n n C1 C2 PG4 sing 239 n n C1 H11 PG4 sing 240 n n C1 H12 PG4 sing 241 n n C2 O2 PG4 sing 242 n n C2 H21 PG4 sing 243 n n C2 H22 PG4 sing 244 n n O2 C3 PG4 sing 245 n n C3 C4 PG4 sing 246 n n C3 H31 PG4 sing 247 n n C3 H32 PG4 sing 248 n n C4 O3 PG4 sing 249 n n C4 H41 PG4 sing 250 n n C4 H42 PG4 sing 251 n n O3 C5 PG4 sing 252 n n C5 C6 PG4 sing 253 n n C5 H51 PG4 sing 254 n n C5 H52 PG4 sing 255 n n C6 O4 PG4 sing 256 n n C6 H61 PG4 sing 257 n n C6 H62 PG4 sing 258 n n O4 C7 PG4 sing 259 n n C7 C8 PG4 sing 260 n n C7 H71 PG4 sing 261 n n C7 H72 PG4 sing 262 n n C8 O5 PG4 sing 263 n n C8 H81 PG4 sing 264 n n C8 H82 PG4 sing 265 n n O5 HO5 PG4 sing 266 n n # _atom_sites.entry_id 5NAZ _atom_sites.fract_transf_matrix[1][1] 0.008245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 301 1 CL CL . C 2 CL A 1 302 2 CL CL . D 3 PG4 A 1 303 1 PG4 PE . E 3 PG4 A 1 304 2 PG4 PE . F 4 HOH A 1 401 38 HOH HOH . F 4 HOH A 2 402 8 HOH HOH . F 4 HOH A 3 403 88 HOH HOH . F 4 HOH A 4 404 65 HOH HOH . F 4 HOH A 5 405 89 HOH HOH . F 4 HOH A 6 406 25 HOH HOH . F 4 HOH A 7 407 50 HOH HOH . F 4 HOH A 8 408 26 HOH HOH . F 4 HOH A 9 409 113 HOH HOH . F 4 HOH A 10 410 115 HOH HOH . F 4 HOH A 11 411 77 HOH HOH . F 4 HOH A 12 412 16 HOH HOH . F 4 HOH A 13 413 61 HOH HOH . F 4 HOH A 14 414 36 HOH HOH . F 4 HOH A 15 415 21 HOH HOH . F 4 HOH A 16 416 2 HOH HOH . F 4 HOH A 17 417 14 HOH HOH . F 4 HOH A 18 418 7 HOH HOH . F 4 HOH A 19 419 62 HOH HOH . F 4 HOH A 20 420 78 HOH HOH . F 4 HOH A 21 421 37 HOH HOH . F 4 HOH A 22 422 90 HOH HOH . F 4 HOH A 23 423 32 HOH HOH . F 4 HOH A 24 424 52 HOH HOH . F 4 HOH A 25 425 12 HOH HOH . F 4 HOH A 26 426 27 HOH HOH . F 4 HOH A 27 427 93 HOH HOH . F 4 HOH A 28 428 66 HOH HOH . F 4 HOH A 29 429 111 HOH HOH . F 4 HOH A 30 430 80 HOH HOH . F 4 HOH A 31 431 59 HOH HOH . F 4 HOH A 32 432 108 HOH HOH . F 4 HOH A 33 433 53 HOH HOH . F 4 HOH A 34 434 79 HOH HOH . F 4 HOH A 35 435 58 HOH HOH . F 4 HOH A 36 436 95 HOH HOH . F 4 HOH A 37 437 69 HOH HOH . F 4 HOH A 38 438 17 HOH HOH . F 4 HOH A 39 439 35 HOH HOH . F 4 HOH A 40 440 100 HOH HOH . F 4 HOH A 41 441 83 HOH HOH . F 4 HOH A 42 442 11 HOH HOH . F 4 HOH A 43 443 70 HOH HOH . F 4 HOH A 44 444 64 HOH HOH . F 4 HOH A 45 445 31 HOH HOH . F 4 HOH A 46 446 40 HOH HOH . F 4 HOH A 47 447 101 HOH HOH . F 4 HOH A 48 448 6 HOH HOH . F 4 HOH A 49 449 68 HOH HOH . F 4 HOH A 50 450 5 HOH HOH . F 4 HOH A 51 451 109 HOH HOH . F 4 HOH A 52 452 4 HOH HOH . F 4 HOH A 53 453 19 HOH HOH . F 4 HOH A 54 454 29 HOH HOH . F 4 HOH A 55 455 48 HOH HOH . F 4 HOH A 56 456 24 HOH HOH . F 4 HOH A 57 457 49 HOH HOH . F 4 HOH A 58 458 51 HOH HOH . F 4 HOH A 59 459 1 HOH HOH . F 4 HOH A 60 460 23 HOH HOH . F 4 HOH A 61 461 20 HOH HOH . F 4 HOH A 62 462 74 HOH HOH . F 4 HOH A 63 463 92 HOH HOH . F 4 HOH A 64 464 110 HOH HOH . F 4 HOH A 65 465 30 HOH HOH . F 4 HOH A 66 466 72 HOH HOH . F 4 HOH A 67 467 41 HOH HOH . F 4 HOH A 68 468 3 HOH HOH . F 4 HOH A 69 469 28 HOH HOH . F 4 HOH A 70 470 43 HOH HOH . F 4 HOH A 71 471 42 HOH HOH . F 4 HOH A 72 472 63 HOH HOH . F 4 HOH A 73 473 67 HOH HOH . F 4 HOH A 74 474 71 HOH HOH . F 4 HOH A 75 475 106 HOH HOH . F 4 HOH A 76 476 13 HOH HOH . F 4 HOH A 77 477 22 HOH HOH . F 4 HOH A 78 478 91 HOH HOH . F 4 HOH A 79 479 97 HOH HOH . F 4 HOH A 80 480 10 HOH HOH . F 4 HOH A 81 481 86 HOH HOH . F 4 HOH A 82 482 102 HOH HOH . F 4 HOH A 83 483 46 HOH HOH . F 4 HOH A 84 484 104 HOH HOH . F 4 HOH A 85 485 85 HOH HOH . F 4 HOH A 86 486 56 HOH HOH . F 4 HOH A 87 487 18 HOH HOH . F 4 HOH A 88 488 76 HOH HOH . F 4 HOH A 89 489 84 HOH HOH . F 4 HOH A 90 490 47 HOH HOH . F 4 HOH A 91 491 112 HOH HOH . F 4 HOH A 92 492 114 HOH HOH . F 4 HOH A 93 493 82 HOH HOH . F 4 HOH A 94 494 9 HOH HOH . F 4 HOH A 95 495 15 HOH HOH . F 4 HOH A 96 496 44 HOH HOH . F 4 HOH A 97 497 105 HOH HOH . F 4 HOH A 98 498 55 HOH HOH . F 4 HOH A 99 499 99 HOH HOH . F 4 HOH A 100 500 54 HOH HOH . F 4 HOH A 101 501 75 HOH HOH . F 4 HOH A 102 502 81 HOH HOH . F 4 HOH A 103 503 116 HOH HOH . F 4 HOH A 104 504 94 HOH HOH . F 4 HOH A 105 505 103 HOH HOH . F 4 HOH A 106 506 87 HOH HOH . F 4 HOH A 107 507 60 HOH HOH . F 4 HOH A 108 508 34 HOH HOH . F 4 HOH A 109 509 96 HOH HOH . F 4 HOH A 110 510 33 HOH HOH . F 4 HOH A 111 511 107 HOH HOH . F 4 HOH A 112 512 45 HOH HOH . F 4 HOH A 113 513 57 HOH HOH . F 4 HOH A 114 514 98 HOH HOH . F 4 HOH A 115 515 39 HOH HOH . F 4 HOH A 116 516 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . E 3 13.29 -21.213 0.567 1 32.55 ? O1 PG4 304 A 1 HETATM 2 C C1 PG4 . . . E 3 14.669 -20.965 0.281 1 29.67 ? C1 PG4 304 A 1 HETATM 3 C C2 PG4 . . . E 3 15.066 -21.825 -0.91 1 29.71 ? C2 PG4 304 A 1 HETATM 4 O O2 PG4 . . . E 3 15.293 -20.987 -2.045 1 28.71 ? O2 PG4 304 A 1 HETATM 5 C C3 PG4 . . . E 3 15.426 -21.725 -3.255 1 26.99 ? C3 PG4 304 A 1 HETATM 6 C C4 PG4 . . . E 3 15.381 -20.75 -4.426 1 26.6 ? C4 PG4 304 A 1 HETATM 7 O O3 PG4 . . . E 3 16.458 -19.835 -4.316 1 27.2 ? O3 PG4 304 A 1 HETATM 8 C C5 PG4 . . . E 3 16.428 -18.81 -5.3 1 28.74 ? C5 PG4 304 A 1 HETATM 9 C C6 PG4 . . . E 3 17.276 -17.639 -4.807 1 29.96 ? C6 PG4 304 A 1 HETATM 10 O O4 PG4 . . . E 3 18.616 -17.798 -5.287 1 31.5 ? O4 PG4 304 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #