data_5NB8 # _model_server_result.job_id p80iPw8q9wPNLr2KOtww6g _model_server_result.datetime_utc '2024-10-19 16:45:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":202}' # _entry.id 5NB8 # _exptl.entry_id 5NB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 75.3 _cell.angle_beta 82 _cell.angle_gamma 89.9 _cell.entry_id 5NB8 _cell.length_a 38.4 _cell.length_b 43.1 _cell.length_c 72.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,K 1 1 B,G,H,L 2 1 C,I,M 3 1 D,J,N 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 104 1_555 A SG CYS 29 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 23 A CYS 121 1_555 A SG CYS 63 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf3 A SG CYS 27 A CYS 125 1_555 A SG CYS 36 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 40 A CYS 138 1_555 A SG CYS 64 A CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 51 A CYS 149 1_555 A SG CYS 69 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf6 B SG CYS 6 B CYS 104 1_555 B SG CYS 29 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 B SG CYS 23 B CYS 121 1_555 B SG CYS 63 B CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf8 B SG CYS 27 B CYS 125 1_555 B SG CYS 36 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf9 B SG CYS 40 B CYS 138 1_555 B SG CYS 64 B CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf10 B SG CYS 51 B CYS 149 1_555 B SG CYS 69 B CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf11 C SG CYS 6 C CYS 104 1_555 C SG CYS 29 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf12 C SG CYS 23 C CYS 121 1_555 C SG CYS 63 C CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf13 C SG CYS 27 C CYS 125 1_555 C SG CYS 36 C CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf14 C SG CYS 40 C CYS 138 1_555 C SG CYS 64 C CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 C SG CYS 51 C CYS 149 1_555 C SG CYS 69 C CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf16 D SG CYS 6 D CYS 104 1_555 D SG CYS 29 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 D SG CYS 23 D CYS 121 1_555 D SG CYS 63 D CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf18 D SG CYS 27 D CYS 125 1_555 D SG CYS 36 D CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf19 D SG CYS 40 D CYS 138 1_555 D SG CYS 64 D CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 D SG CYS 51 D CYS 149 1_555 D SG CYS 69 D CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5NB8 _atom_sites.fract_transf_matrix[1][1] 0.026042 _atom_sites.fract_transf_matrix[1][2] -0.000045 _atom_sites.fract_transf_matrix[1][3] -0.003774 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023202 _atom_sites.fract_transf_matrix[2][3] -0.006145 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 IMD A 1 201 4 IMD IMD . F 2 IMD A 1 202 6 IMD IMD . G 3 GOL B 1 201 1 GOL GOL . H 2 IMD B 1 202 3 IMD IMD . I 2 IMD C 1 201 5 IMD IMD . J 2 IMD D 1 201 2 IMD IMD . K 4 HOH A 1 301 126 HOH HOH . K 4 HOH A 2 302 27 HOH HOH . K 4 HOH A 3 303 72 HOH HOH . K 4 HOH A 4 304 70 HOH HOH . K 4 HOH A 5 305 100 HOH HOH . K 4 HOH A 6 306 117 HOH HOH . K 4 HOH A 7 307 24 HOH HOH . K 4 HOH A 8 308 18 HOH HOH . K 4 HOH A 9 309 30 HOH HOH . K 4 HOH A 10 310 144 HOH HOH . K 4 HOH A 11 311 31 HOH HOH . K 4 HOH A 12 312 7 HOH HOH . K 4 HOH A 13 313 10 HOH HOH . K 4 HOH A 14 314 8 HOH HOH . K 4 HOH A 15 315 39 HOH HOH . K 4 HOH A 16 316 20 HOH HOH . K 4 HOH A 17 317 15 HOH HOH . K 4 HOH A 18 318 62 HOH HOH . K 4 HOH A 19 319 14 HOH HOH . K 4 HOH A 20 320 86 HOH HOH . K 4 HOH A 21 321 11 HOH HOH . K 4 HOH A 22 322 95 HOH HOH . K 4 HOH A 23 323 9 HOH HOH . K 4 HOH A 24 324 23 HOH HOH . K 4 HOH A 25 325 79 HOH HOH . K 4 HOH A 26 326 13 HOH HOH . K 4 HOH A 27 327 88 HOH HOH . K 4 HOH A 28 328 12 HOH HOH . K 4 HOH A 29 329 19 HOH HOH . K 4 HOH A 30 330 122 HOH HOH . K 4 HOH A 31 331 123 HOH HOH . K 4 HOH A 32 332 68 HOH HOH . K 4 HOH A 33 333 57 HOH HOH . K 4 HOH A 34 334 120 HOH HOH . K 4 HOH A 35 335 142 HOH HOH . K 4 HOH A 36 336 153 HOH HOH . K 4 HOH A 37 337 21 HOH HOH . K 4 HOH A 38 338 145 HOH HOH . K 4 HOH A 39 339 69 HOH HOH . K 4 HOH A 40 340 152 HOH HOH . K 4 HOH A 41 341 116 HOH HOH . L 4 HOH B 1 301 25 HOH HOH . L 4 HOH B 2 302 22 HOH HOH . L 4 HOH B 3 303 33 HOH HOH . L 4 HOH B 4 304 139 HOH HOH . L 4 HOH B 5 305 16 HOH HOH . L 4 HOH B 6 306 71 HOH HOH . L 4 HOH B 7 307 50 HOH HOH . L 4 HOH B 8 308 65 HOH HOH . L 4 HOH B 9 309 28 HOH HOH . L 4 HOH B 10 310 77 HOH HOH . L 4 HOH B 11 311 2 HOH HOH . L 4 HOH B 12 312 5 HOH HOH . L 4 HOH B 13 313 91 HOH HOH . L 4 HOH B 14 314 134 HOH HOH . L 4 HOH B 15 315 17 HOH HOH . L 4 HOH B 16 316 146 HOH HOH . L 4 HOH B 17 317 81 HOH HOH . L 4 HOH B 18 318 3 HOH HOH . L 4 HOH B 19 319 73 HOH HOH . L 4 HOH B 20 320 26 HOH HOH . L 4 HOH B 21 321 110 HOH HOH . L 4 HOH B 22 322 4 HOH HOH . L 4 HOH B 23 323 121 HOH HOH . L 4 HOH B 24 324 138 HOH HOH . L 4 HOH B 25 325 6 HOH HOH . L 4 HOH B 26 326 64 HOH HOH . L 4 HOH B 27 327 143 HOH HOH . L 4 HOH B 28 328 150 HOH HOH . L 4 HOH B 29 329 29 HOH HOH . L 4 HOH B 30 330 66 HOH HOH . L 4 HOH B 31 331 141 HOH HOH . L 4 HOH B 32 332 151 HOH HOH . L 4 HOH B 33 333 98 HOH HOH . L 4 HOH B 34 334 115 HOH HOH . L 4 HOH B 35 335 136 HOH HOH . L 4 HOH B 36 336 99 HOH HOH . L 4 HOH B 37 337 140 HOH HOH . L 4 HOH B 38 338 103 HOH HOH . M 4 HOH C 1 301 58 HOH HOH . M 4 HOH C 2 302 125 HOH HOH . M 4 HOH C 3 303 49 HOH HOH . M 4 HOH C 4 304 59 HOH HOH . M 4 HOH C 5 305 118 HOH HOH . M 4 HOH C 6 306 97 HOH HOH . M 4 HOH C 7 307 45 HOH HOH . M 4 HOH C 8 308 53 HOH HOH . M 4 HOH C 9 309 56 HOH HOH . M 4 HOH C 10 310 94 HOH HOH . M 4 HOH C 11 311 44 HOH HOH . M 4 HOH C 12 312 61 HOH HOH . M 4 HOH C 13 313 32 HOH HOH . M 4 HOH C 14 314 46 HOH HOH . M 4 HOH C 15 315 60 HOH HOH . M 4 HOH C 16 316 42 HOH HOH . M 4 HOH C 17 317 52 HOH HOH . M 4 HOH C 18 318 84 HOH HOH . M 4 HOH C 19 319 108 HOH HOH . M 4 HOH C 20 320 54 HOH HOH . M 4 HOH C 21 321 104 HOH HOH . M 4 HOH C 22 322 43 HOH HOH . M 4 HOH C 23 323 96 HOH HOH . M 4 HOH C 24 324 85 HOH HOH . M 4 HOH C 25 325 131 HOH HOH . M 4 HOH C 26 326 132 HOH HOH . M 4 HOH C 27 327 89 HOH HOH . M 4 HOH C 28 328 75 HOH HOH . M 4 HOH C 29 329 147 HOH HOH . M 4 HOH C 30 330 133 HOH HOH . M 4 HOH C 31 331 148 HOH HOH . M 4 HOH C 32 332 74 HOH HOH . M 4 HOH C 33 333 154 HOH HOH . M 4 HOH C 34 334 135 HOH HOH . M 4 HOH C 35 335 82 HOH HOH . M 4 HOH C 36 336 124 HOH HOH . M 4 HOH C 37 337 129 HOH HOH . M 4 HOH C 38 338 90 HOH HOH . N 4 HOH D 1 301 102 HOH HOH . N 4 HOH D 2 302 34 HOH HOH . N 4 HOH D 3 303 149 HOH HOH . N 4 HOH D 4 304 80 HOH HOH . N 4 HOH D 5 305 78 HOH HOH . N 4 HOH D 6 306 40 HOH HOH . N 4 HOH D 7 307 76 HOH HOH . N 4 HOH D 8 308 51 HOH HOH . N 4 HOH D 9 309 47 HOH HOH . N 4 HOH D 10 310 1 HOH HOH . N 4 HOH D 11 311 107 HOH HOH . N 4 HOH D 12 312 109 HOH HOH . N 4 HOH D 13 313 35 HOH HOH . N 4 HOH D 14 314 55 HOH HOH . N 4 HOH D 15 315 137 HOH HOH . N 4 HOH D 16 316 38 HOH HOH . N 4 HOH D 17 317 36 HOH HOH . N 4 HOH D 18 318 63 HOH HOH . N 4 HOH D 19 319 119 HOH HOH . N 4 HOH D 20 320 67 HOH HOH . N 4 HOH D 21 321 48 HOH HOH . N 4 HOH D 22 322 130 HOH HOH . N 4 HOH D 23 323 105 HOH HOH . N 4 HOH D 24 324 37 HOH HOH . N 4 HOH D 25 325 41 HOH HOH . N 4 HOH D 26 326 92 HOH HOH . N 4 HOH D 27 327 93 HOH HOH . N 4 HOH D 28 328 106 HOH HOH . N 4 HOH D 29 329 113 HOH HOH . N 4 HOH D 30 330 112 HOH HOH . N 4 HOH D 31 331 155 HOH HOH . N 4 HOH D 32 332 114 HOH HOH . N 4 HOH D 33 333 111 HOH HOH . N 4 HOH D 34 334 87 HOH HOH . N 4 HOH D 35 335 101 HOH HOH . N 4 HOH D 36 336 127 HOH HOH . N 4 HOH D 37 337 128 HOH HOH . N 4 HOH D 38 338 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . H 2 -4.644 10.591 -0.626 1 103.21 ? N1 IMD 202 B 1 HETATM 2 C C2 IMD . . . H 2 -4.743 11.935 -0.651 1 104.41 ? C2 IMD 202 B 1 HETATM 3 N N3 IMD . . . H 2 -3.508 12.458 -0.484 1 105.79 ? N3 IMD 202 B 1 HETATM 4 C C4 IMD . . . H 2 -2.626 11.446 -0.349 1 104.65 ? C4 IMD 202 B 1 HETATM 5 C C5 IMD . . . H 2 -3.347 10.268 -0.441 1 105.01 ? C5 IMD 202 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #