data_5NBA # _model_server_result.job_id piS8Ksm1F4E2P1PS2KibsA _model_server_result.datetime_utc '2025-01-26 21:48:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5NBA # _exptl.entry_id 5NBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 493.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S},4~{R})-~{N}1-(1-aminocarbonylindol-3-yl)-4-fluoranyl-~{N}2-[3-(trifluoromethyloxy)phenyl]pyrrolidine-1,2-dicarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.82 _cell.angle_gamma 90 _cell.entry_id 5NBA _cell.length_a 55.437 _cell.length_b 49.727 _cell.length_c 39.026 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 123 A CYS 136 1_555 A SG CYS 189 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 154 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 179 A CYS 191 1_555 A SG CYS 204 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C22 H19 F4 N5 O4' _chem_comp.formula_weight 493.411 _chem_comp.id 8S5 _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S},4~{R})-~{N}1-(1-aminocarbonylindol-3-yl)-4-fluoranyl-~{N}2-[3-(trifluoromethyloxy)phenyl]pyrrolidine-1,2-dicarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C4 8S5 sing 1 n n N4 C9 8S5 sing 2 n n C5 C4 8S5 sing 3 n n C5 N1 8S5 sing 4 n n C4 C3 8S5 sing 5 n n C8 C7 8S5 doub 6 n y C8 N3 8S5 sing 7 n y N2 C7 8S5 sing 8 n n N2 C6 8S5 sing 9 n n C9 N3 8S5 sing 10 n n C9 O2 8S5 doub 11 n n C7 C11 8S5 sing 12 n y N3 C10 8S5 sing 13 n y C11 C10 8S5 doub 14 n y C11 C12 8S5 sing 15 n y C10 C15 8S5 sing 16 n y N1 C6 8S5 sing 17 n n N1 C2 8S5 sing 18 n n C12 C13 8S5 doub 19 n y C15 C14 8S5 doub 20 n y C6 O3 8S5 doub 21 n n C3 C2 8S5 sing 22 n n C13 C14 8S5 sing 23 n y C2 C1 8S5 sing 24 n n O1 C1 8S5 doub 25 n n C1 N5 8S5 sing 26 n n N5 C16 8S5 sing 27 n n C16 C17 8S5 doub 28 n y C16 C22 8S5 sing 29 n y C17 C18 8S5 sing 30 n y C22 C20 8S5 doub 31 n y C18 C19 8S5 doub 32 n y C20 C19 8S5 sing 33 n y C20 O4 8S5 sing 34 n n F3 C21 8S5 sing 35 n n O4 C21 8S5 sing 36 n n C21 F4 8S5 sing 37 n n C21 F2 8S5 sing 38 n n C4 H1 8S5 sing 39 n n C14 H2 8S5 sing 40 n n C5 H3 8S5 sing 41 n n C5 H4 8S5 sing 42 n n C8 H5 8S5 sing 43 n n C12 H6 8S5 sing 44 n n C13 H7 8S5 sing 45 n n N2 H8 8S5 sing 46 n n C3 H9 8S5 sing 47 n n C3 H10 8S5 sing 48 n n C2 H11 8S5 sing 49 n n N4 H12 8S5 sing 50 n n N4 H13 8S5 sing 51 n n C15 H14 8S5 sing 52 n n N5 H15 8S5 sing 53 n n C17 H16 8S5 sing 54 n n C18 H17 8S5 sing 55 n n C19 H18 8S5 sing 56 n n C22 H19 8S5 sing 57 n n # _atom_sites.entry_id 5NBA _atom_sites.fract_transf_matrix[1][1] 0.018038 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005452 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8S5 A 1 301 1 8S5 DRG . C 3 HOH A 1 401 64 HOH HOH . C 3 HOH A 2 402 87 HOH HOH . C 3 HOH A 3 403 43 HOH HOH . C 3 HOH A 4 404 121 HOH HOH . C 3 HOH A 5 405 138 HOH HOH . C 3 HOH A 6 406 131 HOH HOH . C 3 HOH A 7 407 135 HOH HOH . C 3 HOH A 8 408 139 HOH HOH . C 3 HOH A 9 409 124 HOH HOH . C 3 HOH A 10 410 140 HOH HOH . C 3 HOH A 11 411 86 HOH HOH . C 3 HOH A 12 412 77 HOH HOH . C 3 HOH A 13 413 40 HOH HOH . C 3 HOH A 14 414 11 HOH HOH . C 3 HOH A 15 415 29 HOH HOH . C 3 HOH A 16 416 114 HOH HOH . C 3 HOH A 17 417 15 HOH HOH . C 3 HOH A 18 418 65 HOH HOH . C 3 HOH A 19 419 9 HOH HOH . C 3 HOH A 20 420 7 HOH HOH . C 3 HOH A 21 421 6 HOH HOH . C 3 HOH A 22 422 108 HOH HOH . C 3 HOH A 23 423 100 HOH HOH . C 3 HOH A 24 424 78 HOH HOH . C 3 HOH A 25 425 22 HOH HOH . C 3 HOH A 26 426 83 HOH HOH . C 3 HOH A 27 427 47 HOH HOH . C 3 HOH A 28 428 26 HOH HOH . C 3 HOH A 29 429 59 HOH HOH . C 3 HOH A 30 430 110 HOH HOH . C 3 HOH A 31 431 32 HOH HOH . C 3 HOH A 32 432 33 HOH HOH . C 3 HOH A 33 433 88 HOH HOH . C 3 HOH A 34 434 38 HOH HOH . C 3 HOH A 35 435 70 HOH HOH . C 3 HOH A 36 436 127 HOH HOH . C 3 HOH A 37 437 76 HOH HOH . C 3 HOH A 38 438 118 HOH HOH . C 3 HOH A 39 439 92 HOH HOH . C 3 HOH A 40 440 35 HOH HOH . C 3 HOH A 41 441 102 HOH HOH . C 3 HOH A 42 442 44 HOH HOH . C 3 HOH A 43 443 25 HOH HOH . C 3 HOH A 44 444 24 HOH HOH . C 3 HOH A 45 445 4 HOH HOH . C 3 HOH A 46 446 46 HOH HOH . C 3 HOH A 47 447 48 HOH HOH . C 3 HOH A 48 448 41 HOH HOH . C 3 HOH A 49 449 3 HOH HOH . C 3 HOH A 50 450 5 HOH HOH . C 3 HOH A 51 451 37 HOH HOH . C 3 HOH A 52 452 10 HOH HOH . C 3 HOH A 53 453 69 HOH HOH . C 3 HOH A 54 454 13 HOH HOH . C 3 HOH A 55 455 122 HOH HOH . C 3 HOH A 56 456 95 HOH HOH . C 3 HOH A 57 457 30 HOH HOH . C 3 HOH A 58 458 20 HOH HOH . C 3 HOH A 59 459 66 HOH HOH . C 3 HOH A 60 460 123 HOH HOH . C 3 HOH A 61 461 97 HOH HOH . C 3 HOH A 62 462 74 HOH HOH . C 3 HOH A 63 463 39 HOH HOH . C 3 HOH A 64 464 12 HOH HOH . C 3 HOH A 65 465 80 HOH HOH . C 3 HOH A 66 466 27 HOH HOH . C 3 HOH A 67 467 17 HOH HOH . C 3 HOH A 68 468 120 HOH HOH . C 3 HOH A 69 469 61 HOH HOH . C 3 HOH A 70 470 50 HOH HOH . C 3 HOH A 71 471 112 HOH HOH . C 3 HOH A 72 472 99 HOH HOH . C 3 HOH A 73 473 28 HOH HOH . C 3 HOH A 74 474 130 HOH HOH . C 3 HOH A 75 475 16 HOH HOH . C 3 HOH A 76 476 51 HOH HOH . C 3 HOH A 77 477 116 HOH HOH . C 3 HOH A 78 478 21 HOH HOH . C 3 HOH A 79 479 67 HOH HOH . C 3 HOH A 80 480 63 HOH HOH . C 3 HOH A 81 481 109 HOH HOH . C 3 HOH A 82 482 8 HOH HOH . C 3 HOH A 83 483 113 HOH HOH . C 3 HOH A 84 484 42 HOH HOH . C 3 HOH A 85 485 91 HOH HOH . C 3 HOH A 86 486 82 HOH HOH . C 3 HOH A 87 487 45 HOH HOH . C 3 HOH A 88 488 93 HOH HOH . C 3 HOH A 89 489 96 HOH HOH . C 3 HOH A 90 490 55 HOH HOH . C 3 HOH A 91 491 18 HOH HOH . C 3 HOH A 92 492 101 HOH HOH . C 3 HOH A 93 493 132 HOH HOH . C 3 HOH A 94 494 19 HOH HOH . C 3 HOH A 95 495 85 HOH HOH . C 3 HOH A 96 496 75 HOH HOH . C 3 HOH A 97 497 72 HOH HOH . C 3 HOH A 98 498 133 HOH HOH . C 3 HOH A 99 499 103 HOH HOH . C 3 HOH A 100 500 111 HOH HOH . C 3 HOH A 101 501 34 HOH HOH . C 3 HOH A 102 502 84 HOH HOH . C 3 HOH A 103 503 56 HOH HOH . C 3 HOH A 104 504 31 HOH HOH . C 3 HOH A 105 505 62 HOH HOH . C 3 HOH A 106 506 73 HOH HOH . C 3 HOH A 107 507 119 HOH HOH . C 3 HOH A 108 508 89 HOH HOH . C 3 HOH A 109 509 115 HOH HOH . C 3 HOH A 110 510 53 HOH HOH . C 3 HOH A 111 511 129 HOH HOH . C 3 HOH A 112 512 134 HOH HOH . C 3 HOH A 113 513 137 HOH HOH . C 3 HOH A 114 514 98 HOH HOH . C 3 HOH A 115 515 128 HOH HOH . C 3 HOH A 116 516 125 HOH HOH . C 3 HOH A 117 517 126 HOH HOH . C 3 HOH A 118 518 105 HOH HOH . C 3 HOH A 119 519 23 HOH HOH . C 3 HOH A 120 520 136 HOH HOH . C 3 HOH A 121 521 117 HOH HOH . C 3 HOH A 122 522 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 8S5 . . . B 2 10.812 10.371 0.595 1 13.99 ? C4 8S5 301 A 1 HETATM 2 C C14 8S5 . . . B 2 2.173 7.526 2.198 1 14.08 ? C14 8S5 301 A 1 HETATM 3 C C5 8S5 . . . B 2 9.396 10.108 0.413 1 13.55 ? C5 8S5 301 A 1 HETATM 4 C C6 8S5 . . . B 2 8.142 8.516 1.965 1 13.92 ? C6 8S5 301 A 1 HETATM 5 C C11 8S5 . . . B 2 4.879 7.624 1.529 1 14.04 ? C11 8S5 301 A 1 HETATM 6 C C7 8S5 . . . B 2 6.196 7.335 1.127 1 14.96 ? C7 8S5 301 A 1 HETATM 7 C C8 8S5 . . . B 2 6.298 5.96 0.873 1 14.74 ? C8 8S5 301 A 1 HETATM 8 C C9 8S5 . . . B 2 4.751 4.004 1.056 1 14.51 ? C9 8S5 301 A 1 HETATM 9 C C10 8S5 . . . B 2 4.172 6.409 1.55 1 14.01 ? C10 8S5 301 A 1 HETATM 10 C C12 8S5 . . . B 2 4.198 8.813 1.845 1 15.9 ? C12 8S5 301 A 1 HETATM 11 C C13 8S5 . . . B 2 2.846 8.746 2.159 1 14.62 ? C13 8S5 301 A 1 HETATM 12 N N1 8S5 . . . B 2 9.083 9.431 1.679 1 13.53 ? N1 8S5 301 A 1 HETATM 13 N N2 8S5 . . . B 2 7.258 8.239 0.98 1 15.09 ? N2 8S5 301 A 1 HETATM 14 C C3 8S5 . . . B 2 10.935 10.858 1.973 1 13.29 ? C3 8S5 301 A 1 HETATM 15 N N3 8S5 . . . B 2 5.062 5.383 1.172 1 14.15 ? N3 8S5 301 A 1 HETATM 16 O O1 8S5 . . . B 2 8.205 11.202 3.665 1 10.77 ? O1 8S5 301 A 1 HETATM 17 C C1 8S5 . . . B 2 9.246 10.594 3.861 1 14.23 ? C1 8S5 301 A 1 HETATM 18 C C2 8S5 . . . B 2 9.95 9.947 2.705 1 12.92 ? C2 8S5 301 A 1 HETATM 19 F F1 8S5 . . . B 2 11.647 9.306 0.288 1 15.32 ? F1 8S5 301 A 1 HETATM 20 N N4 8S5 . . . B 2 5.645 3.292 0.371 1 14.76 ? N4 8S5 301 A 1 HETATM 21 O O2 8S5 . . . B 2 3.722 3.545 1.493 1 12.55 ? O2 8S5 301 A 1 HETATM 22 C C15 8S5 . . . B 2 2.809 6.342 1.872 1 14.39 ? C15 8S5 301 A 1 HETATM 23 O O3 8S5 . . . B 2 8.032 8.014 3.108 1 12.76 ? O3 8S5 301 A 1 HETATM 24 N N5 8S5 . . . B 2 9.819 10.437 5.084 1 14.72 ? N5 8S5 301 A 1 HETATM 25 C C16 8S5 . . . B 2 9.412 11.022 6.323 1 15.66 ? C16 8S5 301 A 1 HETATM 26 C C17 8S5 . . . B 2 9.02 12.349 6.442 1 17.56 ? C17 8S5 301 A 1 HETATM 27 C C18 8S5 . . . B 2 8.673 12.862 7.693 1 18.51 ? C18 8S5 301 A 1 HETATM 28 C C19 8S5 . . . B 2 8.724 12.066 8.828 1 18.31 ? C19 8S5 301 A 1 HETATM 29 C C20 8S5 . . . B 2 9.133 10.742 8.7 1 18.24 ? C20 8S5 301 A 1 HETATM 30 O O4 8S5 . . . B 2 9.242 9.938 9.869 1 17.33 ? O4 8S5 301 A 1 HETATM 31 C C21 8S5 . . . B 2 8.218 9.2 10.192 1 18.38 ? C21 8S5 301 A 1 HETATM 32 F F2 8S5 . . . B 2 8.505 8.647 11.369 1 18.52 ? F2 8S5 301 A 1 HETATM 33 F F3 8S5 . . . B 2 7.936 8.278 9.289 1 20.46 ? F3 8S5 301 A 1 HETATM 34 F F4 8S5 . . . B 2 7.121 9.902 10.312 1 19.86 ? F4 8S5 301 A 1 HETATM 35 C C22 8S5 . . . B 2 9.486 10.225 7.461 1 16.05 ? C22 8S5 301 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #