data_5NBK
#
_model_server_result.job_id            S43wGfLkbdQV81cwjPfpjA 
_model_server_result.datetime_utc      '2024-11-02 16:35:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nbk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":303}' 
#
_entry.id    5NBK 
#
_exptl.entry_id    5NBK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              194.226 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TETRAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NBK 
_cell.length_a            108.047 
_cell.length_b            108.047 
_cell.length_c            92.571 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NBK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1 
B,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 93 A HIS 120 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc2 A ND1 HIS 95 A HIS 122 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc3 A OD2 ASP 97 A ASP 124 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc4 A NE2 HIS 162 A HIS 189 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc5 A SG CYS 181 A CYS 208 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc6 D ZN ZN . A ZN 302 1_555 M O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc7 B NE2 HIS 93 C HIS 120 1_555 H ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc8 B ND1 HIS 95 C HIS 122 1_555 H ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc9 B OD2 ASP 97 C ASP 124 1_555 I ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc10 B NE2 HIS 162 C HIS 189 1_555 H ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc11 B SG CYS 181 C CYS 208 1_555 I ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc12 B NE2 HIS 223 C HIS 250 1_555 I ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc13 H ZN ZN . C ZN 301 1_555 N O HOH . C HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc14 I ZN ZN . C ZN 302 1_555 N O HOH . C HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
#
_chem_comp.formula           'C8 H18 O5' 
_chem_comp.formula_weight    194.226 
_chem_comp.id                PG4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TETRAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 PG4 sing 281 n n 
O1 HO1 PG4 sing 282 n n 
C1 C2 PG4 sing 283 n n 
C1 H11 PG4 sing 284 n n 
C1 H12 PG4 sing 285 n n 
C2 O2 PG4 sing 286 n n 
C2 H21 PG4 sing 287 n n 
C2 H22 PG4 sing 288 n n 
O2 C3 PG4 sing 289 n n 
C3 C4 PG4 sing 290 n n 
C3 H31 PG4 sing 291 n n 
C3 H32 PG4 sing 292 n n 
C4 O3 PG4 sing 293 n n 
C4 H41 PG4 sing 294 n n 
C4 H42 PG4 sing 295 n n 
O3 C5 PG4 sing 296 n n 
C5 C6 PG4 sing 297 n n 
C5 H51 PG4 sing 298 n n 
C5 H52 PG4 sing 299 n n 
C6 O4 PG4 sing 300 n n 
C6 H61 PG4 sing 301 n n 
C6 H62 PG4 sing 302 n n 
O4 C7 PG4 sing 303 n n 
C7 C8 PG4 sing 304 n n 
C7 H71 PG4 sing 305 n n 
C7 H72 PG4 sing 306 n n 
C8 O5 PG4 sing 307 n n 
C8 H81 PG4 sing 308 n n 
C8 H82 PG4 sing 309 n n 
O5 HO5 PG4 sing 310 n n 
#
_atom_sites.entry_id                     5NBK 
_atom_sites.fract_transf_matrix[1][1]    0.009255 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009255 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010803 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 301 302 ZN ZN . 
D 2 ZN A 1 302 303 ZN ZN . 
E 3 PG4 A 1 303 6115 PG4 PG4 . 
F 4 CL A 1 304 2 CL CL . 
G 5 P6G A 1 305 5956 P6G P6G . 
H 2 ZN C 1 301 302 ZN ZN . 
I 2 ZN C 1 302 303 ZN ZN . 
J 3 PG4 C 1 303 6113 PG4 PG4 . 
K 3 PG4 C 1 304 6114 PG4 PG4 . 
L 4 CL C 1 305 1 CL CL . 
M 6 HOH A 1 401 68 HOH HOH . 
M 6 HOH A 2 402 2041 HOH HOH . 
M 6 HOH A 3 403 2004 HOH HOH . 
M 6 HOH A 4 404 15 HOH HOH . 
M 6 HOH A 5 405 12 HOH HOH . 
M 6 HOH A 6 406 2005 HOH HOH . 
M 6 HOH A 7 407 2034 HOH HOH . 
M 6 HOH A 8 408 2012 HOH HOH . 
M 6 HOH A 9 409 2021 HOH HOH . 
M 6 HOH A 10 410 2039 HOH HOH . 
M 6 HOH A 11 411 2019 HOH HOH . 
M 6 HOH A 12 412 16 HOH HOH . 
M 6 HOH A 13 413 2033 HOH HOH . 
M 6 HOH A 14 414 2040 HOH HOH . 
M 6 HOH A 15 415 3 HOH HOH . 
M 6 HOH A 16 416 2011 HOH HOH . 
M 6 HOH A 17 417 2008 HOH HOH . 
M 6 HOH A 18 418 2036 HOH HOH . 
M 6 HOH A 19 419 2015 HOH HOH . 
M 6 HOH A 20 420 60 HOH HOH . 
M 6 HOH A 21 421 2022 HOH HOH . 
M 6 HOH A 22 422 33 HOH HOH . 
M 6 HOH A 23 423 14 HOH HOH . 
M 6 HOH A 24 424 2010 HOH HOH . 
M 6 HOH A 25 425 2018 HOH HOH . 
M 6 HOH A 26 426 2013 HOH HOH . 
M 6 HOH A 27 427 83 HOH HOH . 
M 6 HOH A 28 428 2024 HOH HOH . 
M 6 HOH A 29 429 29 HOH HOH . 
M 6 HOH A 30 430 2037 HOH HOH . 
M 6 HOH A 31 431 36 HOH HOH . 
M 6 HOH A 32 432 2014 HOH HOH . 
M 6 HOH A 33 433 2032 HOH HOH . 
M 6 HOH A 34 434 2031 HOH HOH . 
M 6 HOH A 35 435 2020 HOH HOH . 
M 6 HOH A 36 436 2038 HOH HOH . 
M 6 HOH A 37 437 2009 HOH HOH . 
M 6 HOH A 38 438 21 HOH HOH . 
M 6 HOH A 39 439 2006 HOH HOH . 
M 6 HOH A 40 440 2029 HOH HOH . 
M 6 HOH A 41 441 23 HOH HOH . 
M 6 HOH A 42 442 94 HOH HOH . 
M 6 HOH A 43 443 42 HOH HOH . 
M 6 HOH A 44 444 2042 HOH HOH . 
M 6 HOH A 45 445 2043 HOH HOH . 
M 6 HOH A 46 446 20 HOH HOH . 
M 6 HOH A 47 447 30 HOH HOH . 
M 6 HOH A 48 448 2016 HOH HOH . 
M 6 HOH A 49 449 38 HOH HOH . 
M 6 HOH A 50 450 2003 HOH HOH . 
M 6 HOH A 51 451 45 HOH HOH . 
M 6 HOH A 52 452 41 HOH HOH . 
M 6 HOH A 53 453 2017 HOH HOH . 
N 6 HOH C 1 401 2008 HOH HOH . 
N 6 HOH C 2 402 55 HOH HOH . 
N 6 HOH C 3 403 2015 HOH HOH . 
N 6 HOH C 4 404 48 HOH HOH . 
N 6 HOH C 5 405 2026 HOH HOH . 
N 6 HOH C 6 406 2017 HOH HOH . 
N 6 HOH C 7 407 2011 HOH HOH . 
N 6 HOH C 8 408 2023 HOH HOH . 
N 6 HOH C 9 409 56 HOH HOH . 
N 6 HOH C 10 410 7 HOH HOH . 
N 6 HOH C 11 411 2028 HOH HOH . 
N 6 HOH C 12 412 61 HOH HOH . 
N 6 HOH C 13 413 2013 HOH HOH . 
N 6 HOH C 14 414 24 HOH HOH . 
N 6 HOH C 15 415 90 HOH HOH . 
N 6 HOH C 16 416 2023 HOH HOH . 
N 6 HOH C 17 417 77 HOH HOH . 
N 6 HOH C 18 418 2018 HOH HOH . 
N 6 HOH C 19 419 2006 HOH HOH . 
N 6 HOH C 20 420 2024 HOH HOH . 
N 6 HOH C 21 421 2014 HOH HOH . 
N 6 HOH C 22 422 17 HOH HOH . 
N 6 HOH C 23 423 2007 HOH HOH . 
N 6 HOH C 24 424 2016 HOH HOH . 
N 6 HOH C 25 425 2020 HOH HOH . 
N 6 HOH C 26 426 2025 HOH HOH . 
N 6 HOH C 27 427 47 HOH HOH . 
N 6 HOH C 28 428 59 HOH HOH . 
N 6 HOH C 29 429 34 HOH HOH . 
N 6 HOH C 30 430 2009 HOH HOH . 
N 6 HOH C 31 431 2019 HOH HOH . 
N 6 HOH C 32 432 35 HOH HOH . 
N 6 HOH C 33 433 76 HOH HOH . 
N 6 HOH C 34 434 50 HOH HOH . 
N 6 HOH C 35 435 2035 HOH HOH . 
N 6 HOH C 36 436 2027 HOH HOH . 
N 6 HOH C 37 437 57 HOH HOH . 
N 6 HOH C 38 438 6 HOH HOH . 
N 6 HOH C 39 439 2010 HOH HOH . 
N 6 HOH C 40 440 19 HOH HOH . 
N 6 HOH C 41 441 28 HOH HOH . 
N 6 HOH C 42 442 49 HOH HOH . 
N 6 HOH C 43 443 58 HOH HOH . 
N 6 HOH C 44 444 22 HOH HOH . 
N 6 HOH C 45 445 54 HOH HOH . 
N 6 HOH C 46 446 51 HOH HOH . 
N 6 HOH C 47 447 39 HOH HOH . 
N 6 HOH C 48 448 2022 HOH HOH . 
N 6 HOH C 49 449 2012 HOH HOH . 
N 6 HOH C 50 450 25 HOH HOH . 
N 6 HOH C 51 451 2001 HOH HOH . 
N 6 HOH C 52 452 40 HOH HOH . 
N 6 HOH C 53 453 46 HOH HOH . 
N 6 HOH C 54 454 2021 HOH HOH . 
N 6 HOH C 55 455 26 HOH HOH . 
N 6 HOH C 56 456 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PG4 . . . J 3 38.845 37.752 35.181 1 55.95 ? O1 PG4 303 C 1 
HETATM 2 C C1 PG4 . . . J 3 37.594 37.563 34.521 1 57.94 ? C1 PG4 303 C 1 
HETATM 3 C C2 PG4 . . . J 3 36.522 38.436 35.171 1 59.74 ? C2 PG4 303 C 1 
HETATM 4 O O2 PG4 . . . J 3 35.52 38.75 34.194 1 59.98 ? O2 PG4 303 C 1 
HETATM 5 C C3 PG4 . . . J 3 34.706 39.901 34.466 1 59.3 ? C3 PG4 303 C 1 
HETATM 6 C C4 PG4 . . . J 3 33.26 39.622 34.083 1 55.99 ? C4 PG4 303 C 1 
HETATM 7 O O3 PG4 . . . J 3 32.747 38.569 34.904 1 57.54 ? O3 PG4 303 C 1 
HETATM 8 C C5 PG4 . . . J 3 32.79 37.267 34.306 1 59.44 ? C5 PG4 303 C 1 
HETATM 9 C C6 PG4 . . . J 3 32.541 36.107 35.264 1 62.7 ? C6 PG4 303 C 1 
HETATM 10 O O4 PG4 . . . J 3 33.127 36.269 36.565 1 71.33 ? O4 PG4 303 C 1 
HETATM 11 C C7 PG4 . . . J 3 33.063 35.076 37.367 1 70.44 ? C7 PG4 303 C 1 
HETATM 12 C C8 PG4 . . . J 3 34.307 34.21 37.156 1 67.94 ? C8 PG4 303 C 1 
HETATM 13 O O5 PG4 . . . J 3 35.474 34.987 37.454 1 65.34 ? O5 PG4 303 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#