data_5NBK
#
_model_server_result.job_id            0Y9NRSFM601FCkmWK8yBGQ 
_model_server_result.datetime_utc      '2024-11-02 16:26:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nbk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":305}' 
#
_entry.id    5NBK 
#
_exptl.entry_id    5NBK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.331 
_entity.id                          5 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEXAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NBK 
_cell.length_a            108.047 
_cell.length_b            108.047 
_cell.length_c            92.571 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NBK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1 
B,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 93 A HIS 120 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc2 A ND1 HIS 95 A HIS 122 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc3 A OD2 ASP 97 A ASP 124 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc4 A NE2 HIS 162 A HIS 189 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc5 A SG CYS 181 A CYS 208 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc6 D ZN ZN . A ZN 302 1_555 M O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc7 B NE2 HIS 93 C HIS 120 1_555 H ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc8 B ND1 HIS 95 C HIS 122 1_555 H ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc9 B OD2 ASP 97 C ASP 124 1_555 I ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc10 B NE2 HIS 162 C HIS 189 1_555 H ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc11 B SG CYS 181 C CYS 208 1_555 I ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc12 B NE2 HIS 223 C HIS 250 1_555 I ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc13 H ZN ZN . C ZN 301 1_555 N O HOH . C HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc14 I ZN ZN . C ZN 302 1_555 N O HOH . C HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
#
_chem_comp.formula           'C12 H26 O7' 
_chem_comp.formula_weight    282.331 
_chem_comp.id                P6G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEXAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'POLYETHYLENE GLYCOL PEG400' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 P6G sing 237 n n 
O1 H1 P6G sing 238 n n 
C2 C3 P6G sing 239 n n 
C2 H21 P6G sing 240 n n 
C2 H22 P6G sing 241 n n 
C3 O4 P6G sing 242 n n 
C3 H31 P6G sing 243 n n 
C3 H32 P6G sing 244 n n 
O4 C5 P6G sing 245 n n 
C5 C6 P6G sing 246 n n 
C5 H51 P6G sing 247 n n 
C5 H52 P6G sing 248 n n 
C6 O7 P6G sing 249 n n 
C6 H61 P6G sing 250 n n 
C6 H62 P6G sing 251 n n 
O7 C8 P6G sing 252 n n 
C8 C9 P6G sing 253 n n 
C8 H81 P6G sing 254 n n 
C8 H82 P6G sing 255 n n 
C9 O10 P6G sing 256 n n 
C9 H91 P6G sing 257 n n 
C9 H92 P6G sing 258 n n 
O10 C11 P6G sing 259 n n 
C11 C12 P6G sing 260 n n 
C11 H111 P6G sing 261 n n 
C11 H112 P6G sing 262 n n 
C12 O13 P6G sing 263 n n 
C12 H121 P6G sing 264 n n 
C12 H122 P6G sing 265 n n 
O13 C14 P6G sing 266 n n 
C14 C15 P6G sing 267 n n 
C14 H141 P6G sing 268 n n 
C14 H142 P6G sing 269 n n 
C15 O16 P6G sing 270 n n 
C15 H151 P6G sing 271 n n 
C15 H152 P6G sing 272 n n 
O16 C17 P6G sing 273 n n 
C17 C18 P6G sing 274 n n 
C17 H171 P6G sing 275 n n 
C17 H172 P6G sing 276 n n 
C18 O19 P6G sing 277 n n 
C18 H181 P6G sing 278 n n 
C18 H182 P6G sing 279 n n 
O19 H19 P6G sing 280 n n 
#
_atom_sites.entry_id                     5NBK 
_atom_sites.fract_transf_matrix[1][1]    0.009255 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009255 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010803 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 301 302 ZN ZN . 
D 2 ZN A 1 302 303 ZN ZN . 
E 3 PG4 A 1 303 6115 PG4 PG4 . 
F 4 CL A 1 304 2 CL CL . 
G 5 P6G A 1 305 5956 P6G P6G . 
H 2 ZN C 1 301 302 ZN ZN . 
I 2 ZN C 1 302 303 ZN ZN . 
J 3 PG4 C 1 303 6113 PG4 PG4 . 
K 3 PG4 C 1 304 6114 PG4 PG4 . 
L 4 CL C 1 305 1 CL CL . 
M 6 HOH A 1 401 68 HOH HOH . 
M 6 HOH A 2 402 2041 HOH HOH . 
M 6 HOH A 3 403 2004 HOH HOH . 
M 6 HOH A 4 404 15 HOH HOH . 
M 6 HOH A 5 405 12 HOH HOH . 
M 6 HOH A 6 406 2005 HOH HOH . 
M 6 HOH A 7 407 2034 HOH HOH . 
M 6 HOH A 8 408 2012 HOH HOH . 
M 6 HOH A 9 409 2021 HOH HOH . 
M 6 HOH A 10 410 2039 HOH HOH . 
M 6 HOH A 11 411 2019 HOH HOH . 
M 6 HOH A 12 412 16 HOH HOH . 
M 6 HOH A 13 413 2033 HOH HOH . 
M 6 HOH A 14 414 2040 HOH HOH . 
M 6 HOH A 15 415 3 HOH HOH . 
M 6 HOH A 16 416 2011 HOH HOH . 
M 6 HOH A 17 417 2008 HOH HOH . 
M 6 HOH A 18 418 2036 HOH HOH . 
M 6 HOH A 19 419 2015 HOH HOH . 
M 6 HOH A 20 420 60 HOH HOH . 
M 6 HOH A 21 421 2022 HOH HOH . 
M 6 HOH A 22 422 33 HOH HOH . 
M 6 HOH A 23 423 14 HOH HOH . 
M 6 HOH A 24 424 2010 HOH HOH . 
M 6 HOH A 25 425 2018 HOH HOH . 
M 6 HOH A 26 426 2013 HOH HOH . 
M 6 HOH A 27 427 83 HOH HOH . 
M 6 HOH A 28 428 2024 HOH HOH . 
M 6 HOH A 29 429 29 HOH HOH . 
M 6 HOH A 30 430 2037 HOH HOH . 
M 6 HOH A 31 431 36 HOH HOH . 
M 6 HOH A 32 432 2014 HOH HOH . 
M 6 HOH A 33 433 2032 HOH HOH . 
M 6 HOH A 34 434 2031 HOH HOH . 
M 6 HOH A 35 435 2020 HOH HOH . 
M 6 HOH A 36 436 2038 HOH HOH . 
M 6 HOH A 37 437 2009 HOH HOH . 
M 6 HOH A 38 438 21 HOH HOH . 
M 6 HOH A 39 439 2006 HOH HOH . 
M 6 HOH A 40 440 2029 HOH HOH . 
M 6 HOH A 41 441 23 HOH HOH . 
M 6 HOH A 42 442 94 HOH HOH . 
M 6 HOH A 43 443 42 HOH HOH . 
M 6 HOH A 44 444 2042 HOH HOH . 
M 6 HOH A 45 445 2043 HOH HOH . 
M 6 HOH A 46 446 20 HOH HOH . 
M 6 HOH A 47 447 30 HOH HOH . 
M 6 HOH A 48 448 2016 HOH HOH . 
M 6 HOH A 49 449 38 HOH HOH . 
M 6 HOH A 50 450 2003 HOH HOH . 
M 6 HOH A 51 451 45 HOH HOH . 
M 6 HOH A 52 452 41 HOH HOH . 
M 6 HOH A 53 453 2017 HOH HOH . 
N 6 HOH C 1 401 2008 HOH HOH . 
N 6 HOH C 2 402 55 HOH HOH . 
N 6 HOH C 3 403 2015 HOH HOH . 
N 6 HOH C 4 404 48 HOH HOH . 
N 6 HOH C 5 405 2026 HOH HOH . 
N 6 HOH C 6 406 2017 HOH HOH . 
N 6 HOH C 7 407 2011 HOH HOH . 
N 6 HOH C 8 408 2023 HOH HOH . 
N 6 HOH C 9 409 56 HOH HOH . 
N 6 HOH C 10 410 7 HOH HOH . 
N 6 HOH C 11 411 2028 HOH HOH . 
N 6 HOH C 12 412 61 HOH HOH . 
N 6 HOH C 13 413 2013 HOH HOH . 
N 6 HOH C 14 414 24 HOH HOH . 
N 6 HOH C 15 415 90 HOH HOH . 
N 6 HOH C 16 416 2023 HOH HOH . 
N 6 HOH C 17 417 77 HOH HOH . 
N 6 HOH C 18 418 2018 HOH HOH . 
N 6 HOH C 19 419 2006 HOH HOH . 
N 6 HOH C 20 420 2024 HOH HOH . 
N 6 HOH C 21 421 2014 HOH HOH . 
N 6 HOH C 22 422 17 HOH HOH . 
N 6 HOH C 23 423 2007 HOH HOH . 
N 6 HOH C 24 424 2016 HOH HOH . 
N 6 HOH C 25 425 2020 HOH HOH . 
N 6 HOH C 26 426 2025 HOH HOH . 
N 6 HOH C 27 427 47 HOH HOH . 
N 6 HOH C 28 428 59 HOH HOH . 
N 6 HOH C 29 429 34 HOH HOH . 
N 6 HOH C 30 430 2009 HOH HOH . 
N 6 HOH C 31 431 2019 HOH HOH . 
N 6 HOH C 32 432 35 HOH HOH . 
N 6 HOH C 33 433 76 HOH HOH . 
N 6 HOH C 34 434 50 HOH HOH . 
N 6 HOH C 35 435 2035 HOH HOH . 
N 6 HOH C 36 436 2027 HOH HOH . 
N 6 HOH C 37 437 57 HOH HOH . 
N 6 HOH C 38 438 6 HOH HOH . 
N 6 HOH C 39 439 2010 HOH HOH . 
N 6 HOH C 40 440 19 HOH HOH . 
N 6 HOH C 41 441 28 HOH HOH . 
N 6 HOH C 42 442 49 HOH HOH . 
N 6 HOH C 43 443 58 HOH HOH . 
N 6 HOH C 44 444 22 HOH HOH . 
N 6 HOH C 45 445 54 HOH HOH . 
N 6 HOH C 46 446 51 HOH HOH . 
N 6 HOH C 47 447 39 HOH HOH . 
N 6 HOH C 48 448 2022 HOH HOH . 
N 6 HOH C 49 449 2012 HOH HOH . 
N 6 HOH C 50 450 25 HOH HOH . 
N 6 HOH C 51 451 2001 HOH HOH . 
N 6 HOH C 52 452 40 HOH HOH . 
N 6 HOH C 53 453 46 HOH HOH . 
N 6 HOH C 54 454 2021 HOH HOH . 
N 6 HOH C 55 455 26 HOH HOH . 
N 6 HOH C 56 456 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 P6G . . . G 5 18.461 23.237 47.905 1 49.98 ? O1 P6G 305 A 1 
HETATM 2 C C2 P6G . . . G 5 19.25 24.381 48.304 1 58.05 ? C2 P6G 305 A 1 
HETATM 3 C C3 P6G . . . G 5 20.438 24.074 49.245 1 57.9 ? C3 P6G 305 A 1 
HETATM 4 O O4 P6G . . . G 5 20.314 22.818 49.941 1 58.08 ? O4 P6G 305 A 1 
HETATM 5 C C5 P6G . . . G 5 21.202 21.778 49.502 1 60.37 ? C5 P6G 305 A 1 
HETATM 6 C C6 P6G . . . G 5 21.199 20.611 50.493 1 60.55 ? C6 P6G 305 A 1 
HETATM 7 O O7 P6G . . . G 5 20.209 19.622 50.172 1 58.3 ? O7 P6G 305 A 1 
HETATM 8 C C8 P6G . . . G 5 20.284 18.492 51.052 1 64.4 ? C8 P6G 305 A 1 
HETATM 9 C C9 P6G . . . G 5 18.935 17.779 51.191 1 67.45 ? C9 P6G 305 A 1 
HETATM 10 O O10 P6G . . . G 5 18.316 17.996 52.473 1 69.61 ? O10 P6G 305 A 1 
HETATM 11 C C11 P6G . . . G 5 18.703 17.125 53.545 1 69.49 ? C11 P6G 305 A 1 
HETATM 12 C C12 P6G . . . G 5 17.733 17.289 54.718 1 69.25 ? C12 P6G 305 A 1 
HETATM 13 O O13 P6G . . . G 5 16.379 17.066 54.29 1 68.03 ? O13 P6G 305 A 1 
HETATM 14 C C14 P6G . . . G 5 15.537 16.334 55.201 1 64.42 ? C14 P6G 305 A 1 
HETATM 15 C C15 P6G . . . G 5 14.274 15.884 54.469 1 60.21 ? C15 P6G 305 A 1 
HETATM 16 O O16 P6G . . . G 5 13.328 15.357 55.39 1 56.13 ? O16 P6G 305 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           16 
#