data_5NBL
#
_model_server_result.job_id            AycQwXayK6ypwCh0HSzXnA 
_model_server_result.datetime_utc      '2024-12-27 03:09:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nbl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":501}' 
#
_entry.id    5NBL 
#
_exptl.entry_id    5NBL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5NBL 
_cell.length_a            191.224 
_cell.length_b            191.224 
_cell.length_c            221.973 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NBL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,F,H,I,J,M,P,R 1 1 
B,C,E,G,K,L,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 24 E CYS 24 1_555 E SG CYS 98 E CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 F SG CYS 24 F CYS 24 1_555 F SG CYS 98 F CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 C C GLU 72 C GLU 72 1_555 C N HIC 73 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 C C HIC 73 C HIC 73 1_555 C N GLY 74 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 D C GLU 72 D GLU 72 1_555 D N HIC 73 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 D C HIC 73 D HIC 73 1_555 D N GLY 74 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 I CA CA . A CA 501 1_555 J O1G ATP . A ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
metalc ? metalc2 I CA CA . A CA 501 1_555 J O2B ATP . A ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc3 I CA CA . A CA 501 1_555 M O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc4 I CA CA . A CA 501 1_555 M O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc5 K CA CA . B CA 501 1_555 L O2G ATP . B ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc6 K CA CA . B CA 501 1_555 L O1B ATP . B ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc7 K CA CA . B CA 501 1_555 N O HOH . B HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc8 K CA CA . B CA 501 1_555 N O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5NBL 
_atom_sites.fract_transf_matrix[1][1]    0.005229 
_atom_sites.fract_transf_matrix[1][2]    0.003019 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006038 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004505 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 CA A 1 501 501 CA CA . 
J 6 ATP A 1 502 502 ATP ATP . 
K 5 CA B 1 501 501 CA CA . 
L 6 ATP B 1 502 502 ATP ATP . 
M 7 HOH A 1 601 14 HOH HOH . 
M 7 HOH A 2 602 69 HOH HOH . 
M 7 HOH A 3 603 23 HOH HOH . 
M 7 HOH A 4 604 20 HOH HOH . 
M 7 HOH A 5 605 96 HOH HOH . 
M 7 HOH A 6 606 108 HOH HOH . 
M 7 HOH A 7 607 13 HOH HOH . 
M 7 HOH A 8 608 49 HOH HOH . 
M 7 HOH A 9 609 105 HOH HOH . 
M 7 HOH A 10 610 118 HOH HOH . 
M 7 HOH A 11 611 77 HOH HOH . 
M 7 HOH A 12 612 113 HOH HOH . 
M 7 HOH A 13 613 19 HOH HOH . 
M 7 HOH A 14 614 62 HOH HOH . 
M 7 HOH A 15 615 51 HOH HOH . 
M 7 HOH A 16 616 73 HOH HOH . 
M 7 HOH A 17 617 90 HOH HOH . 
M 7 HOH A 18 618 101 HOH HOH . 
M 7 HOH A 19 619 40 HOH HOH . 
M 7 HOH A 20 620 31 HOH HOH . 
M 7 HOH A 21 621 43 HOH HOH . 
M 7 HOH A 22 622 16 HOH HOH . 
M 7 HOH A 23 623 34 HOH HOH . 
M 7 HOH A 24 624 119 HOH HOH . 
M 7 HOH A 25 625 26 HOH HOH . 
M 7 HOH A 26 626 6 HOH HOH . 
M 7 HOH A 27 627 112 HOH HOH . 
M 7 HOH A 28 628 86 HOH HOH . 
M 7 HOH A 29 629 110 HOH HOH . 
M 7 HOH A 30 630 9 HOH HOH . 
M 7 HOH A 31 631 71 HOH HOH . 
M 7 HOH A 32 632 3 HOH HOH . 
N 7 HOH B 1 601 17 HOH HOH . 
N 7 HOH B 2 602 68 HOH HOH . 
N 7 HOH B 3 603 56 HOH HOH . 
N 7 HOH B 4 604 74 HOH HOH . 
N 7 HOH B 5 605 47 HOH HOH . 
N 7 HOH B 6 606 29 HOH HOH . 
N 7 HOH B 7 607 48 HOH HOH . 
N 7 HOH B 8 608 100 HOH HOH . 
N 7 HOH B 9 609 54 HOH HOH . 
N 7 HOH B 10 610 22 HOH HOH . 
N 7 HOH B 11 611 97 HOH HOH . 
N 7 HOH B 12 612 55 HOH HOH . 
N 7 HOH B 13 613 53 HOH HOH . 
N 7 HOH B 14 614 39 HOH HOH . 
N 7 HOH B 15 615 33 HOH HOH . 
N 7 HOH B 16 616 117 HOH HOH . 
N 7 HOH B 17 617 65 HOH HOH . 
N 7 HOH B 18 618 64 HOH HOH . 
N 7 HOH B 19 619 103 HOH HOH . 
N 7 HOH B 20 620 4 HOH HOH . 
N 7 HOH B 21 621 28 HOH HOH . 
N 7 HOH B 22 622 91 HOH HOH . 
N 7 HOH B 23 623 2 HOH HOH . 
N 7 HOH B 24 624 114 HOH HOH . 
N 7 HOH B 25 625 24 HOH HOH . 
N 7 HOH B 26 626 38 HOH HOH . 
N 7 HOH B 27 627 85 HOH HOH . 
N 7 HOH B 28 628 109 HOH HOH . 
N 7 HOH B 29 629 5 HOH HOH . 
N 7 HOH B 30 630 61 HOH HOH . 
N 7 HOH B 31 631 75 HOH HOH . 
N 7 HOH B 32 632 8 HOH HOH . 
O 7 HOH C 1 401 116 HOH HOH . 
O 7 HOH C 2 402 89 HOH HOH . 
O 7 HOH C 3 403 50 HOH HOH . 
O 7 HOH C 4 404 11 HOH HOH . 
O 7 HOH C 5 405 10 HOH HOH . 
O 7 HOH C 6 406 60 HOH HOH . 
O 7 HOH C 7 407 80 HOH HOH . 
O 7 HOH C 8 408 35 HOH HOH . 
O 7 HOH C 9 409 115 HOH HOH . 
O 7 HOH C 10 410 76 HOH HOH . 
O 7 HOH C 11 411 42 HOH HOH . 
O 7 HOH C 12 412 82 HOH HOH . 
O 7 HOH C 13 413 21 HOH HOH . 
O 7 HOH C 14 414 15 HOH HOH . 
O 7 HOH C 15 415 78 HOH HOH . 
O 7 HOH C 16 416 25 HOH HOH . 
O 7 HOH C 17 417 70 HOH HOH . 
O 7 HOH C 18 418 58 HOH HOH . 
O 7 HOH C 19 419 7 HOH HOH . 
P 7 HOH D 1 401 30 HOH HOH . 
P 7 HOH D 2 402 92 HOH HOH . 
P 7 HOH D 3 403 88 HOH HOH . 
P 7 HOH D 4 404 84 HOH HOH . 
P 7 HOH D 5 405 59 HOH HOH . 
P 7 HOH D 6 406 66 HOH HOH . 
P 7 HOH D 7 407 44 HOH HOH . 
P 7 HOH D 8 408 37 HOH HOH . 
P 7 HOH D 9 409 99 HOH HOH . 
P 7 HOH D 10 410 36 HOH HOH . 
P 7 HOH D 11 411 79 HOH HOH . 
P 7 HOH D 12 412 98 HOH HOH . 
P 7 HOH D 13 413 106 HOH HOH . 
P 7 HOH D 14 414 52 HOH HOH . 
P 7 HOH D 15 415 102 HOH HOH . 
P 7 HOH D 16 416 93 HOH HOH . 
P 7 HOH D 17 417 83 HOH HOH . 
P 7 HOH D 18 418 94 HOH HOH . 
P 7 HOH D 19 419 1 HOH HOH . 
P 7 HOH D 20 420 87 HOH HOH . 
P 7 HOH D 21 421 67 HOH HOH . 
P 7 HOH D 22 422 32 HOH HOH . 
P 7 HOH D 23 423 18 HOH HOH . 
P 7 HOH D 24 424 41 HOH HOH . 
Q 7 HOH E 1 201 81 HOH HOH . 
Q 7 HOH E 2 202 111 HOH HOH . 
Q 7 HOH E 3 203 27 HOH HOH . 
Q 7 HOH E 4 204 107 HOH HOH . 
Q 7 HOH E 5 205 63 HOH HOH . 
Q 7 HOH E 6 206 45 HOH HOH . 
Q 7 HOH E 7 207 46 HOH HOH . 
R 7 HOH F 1 201 72 HOH HOH . 
R 7 HOH F 2 202 95 HOH HOH . 
R 7 HOH F 3 203 57 HOH HOH . 
R 7 HOH F 4 204 104 HOH HOH . 
R 7 HOH F 5 205 12 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -34.748 
_atom_site.Cartn_y               206.642 
_atom_site.Cartn_z               58.182 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        61.14 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#