data_5NC0 # _model_server_result.job_id '_E86j4YUoGdmun7iXsJpFw' _model_server_result.datetime_utc '2024-12-12 07:28:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nc0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":209}' # _entry.id 5NC0 # _exptl.entry_id 5NC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.005 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRITE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5NC0 _cell.length_a 52.43 _cell.length_b 52.43 _cell.length_c 183.25 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 30.541667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N PHE 2 A PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale2 A SG CYS 116 A CYS 116 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? covale ? covale3 A SG CYS 119 A CYS 119 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? metalc ? metalc1 A NE2 HIS 120 A HIS 120 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc2 B FE HEC . A HEC 201 1_555 C N NO . A NO 202 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.848 ? metalc ? metalc3 B FE HEC . A HEC 201 1_555 C O NO . A NO 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.79 ? metalc ? metalc4 B FE HEC . A HEC 201 1_555 C O NO . A NO 202 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.791 ? # _chem_comp.formula 'N O2 -1' _chem_comp.formula_weight 46.005 _chem_comp.id NO2 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRITE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO2 doub 331 n n N O2 NO2 sing 332 n n # _atom_sites.entry_id 5NC0 _atom_sites.fract_transf_matrix[1][1] 0.019073 _atom_sites.fract_transf_matrix[1][2] 0.011012 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 128 HEC HEC . C 3 NO A 1 202 155 NO NO . D 4 NO3 A 1 203 159 NO3 NO3 . E 5 NO2 A 1 204 160 NO2 NO2 . F 6 SO4 A 1 205 1 SO4 SO4 . G 6 SO4 A 1 206 2 SO4 SO4 . H 6 SO4 A 1 207 3 SO4 SO4 . I 6 SO4 A 1 208 4 SO4 SO4 . J 5 NO2 A 1 209 546 NO2 NO2 . K 7 EDO A 1 210 1 EDO EDO . L 7 EDO A 1 211 3 EDO EDO . M 7 EDO A 1 212 5 EDO EDO . N 8 HOH A 1 301 209 HOH HOH . N 8 HOH A 2 302 147 HOH HOH . N 8 HOH A 3 303 86 HOH HOH . N 8 HOH A 4 304 290 HOH HOH . N 8 HOH A 5 305 186 HOH HOH . N 8 HOH A 6 306 107 HOH HOH . N 8 HOH A 7 307 40 HOH HOH . N 8 HOH A 8 308 244 HOH HOH . N 8 HOH A 9 309 117 HOH HOH . N 8 HOH A 10 310 183 HOH HOH . N 8 HOH A 11 311 324 HOH HOH . N 8 HOH A 12 312 313 HOH HOH . N 8 HOH A 13 313 47 HOH HOH . N 8 HOH A 14 314 220 HOH HOH . N 8 HOH A 15 315 159 HOH HOH . N 8 HOH A 16 316 187 HOH HOH . N 8 HOH A 17 317 112 HOH HOH . N 8 HOH A 18 318 100 HOH HOH . N 8 HOH A 19 319 216 HOH HOH . N 8 HOH A 20 320 5 HOH HOH . N 8 HOH A 21 321 96 HOH HOH . N 8 HOH A 22 322 139 HOH HOH . N 8 HOH A 23 323 66 HOH HOH . N 8 HOH A 24 324 34 HOH HOH . N 8 HOH A 25 325 213 HOH HOH . N 8 HOH A 26 326 160 HOH HOH . N 8 HOH A 27 327 59 HOH HOH . N 8 HOH A 28 328 92 HOH HOH . N 8 HOH A 29 329 130 HOH HOH . N 8 HOH A 30 330 45 HOH HOH . N 8 HOH A 31 331 89 HOH HOH . N 8 HOH A 32 332 109 HOH HOH . N 8 HOH A 33 333 320 HOH HOH . N 8 HOH A 34 334 116 HOH HOH . N 8 HOH A 35 335 156 HOH HOH . N 8 HOH A 36 336 13 HOH HOH . N 8 HOH A 37 337 2 HOH HOH . N 8 HOH A 38 338 76 HOH HOH . N 8 HOH A 39 339 170 HOH HOH . N 8 HOH A 40 340 19 HOH HOH . N 8 HOH A 41 341 9 HOH HOH . N 8 HOH A 42 342 325 HOH HOH . N 8 HOH A 43 343 60 HOH HOH . N 8 HOH A 44 344 142 HOH HOH . N 8 HOH A 45 345 54 HOH HOH . N 8 HOH A 46 346 149 HOH HOH . N 8 HOH A 47 347 10 HOH HOH . N 8 HOH A 48 348 80 HOH HOH . N 8 HOH A 49 349 30 HOH HOH . N 8 HOH A 50 350 308 HOH HOH . N 8 HOH A 51 351 11 HOH HOH . N 8 HOH A 52 352 105 HOH HOH . N 8 HOH A 53 353 26 HOH HOH . N 8 HOH A 54 354 29 HOH HOH . N 8 HOH A 55 355 22 HOH HOH . N 8 HOH A 56 356 31 HOH HOH . N 8 HOH A 57 357 104 HOH HOH . N 8 HOH A 58 358 6 HOH HOH . N 8 HOH A 59 359 21 HOH HOH . N 8 HOH A 60 360 18 HOH HOH . N 8 HOH A 61 361 81 HOH HOH . N 8 HOH A 62 362 43 HOH HOH . N 8 HOH A 63 363 16 HOH HOH . N 8 HOH A 64 364 70 HOH HOH . N 8 HOH A 65 365 125 HOH HOH . N 8 HOH A 66 366 167 HOH HOH . N 8 HOH A 67 367 131 HOH HOH . N 8 HOH A 68 368 55 HOH HOH . N 8 HOH A 69 369 90 HOH HOH . N 8 HOH A 70 370 39 HOH HOH . N 8 HOH A 71 371 51 HOH HOH . N 8 HOH A 72 372 128 HOH HOH . N 8 HOH A 73 373 74 HOH HOH . N 8 HOH A 74 374 1 HOH HOH . N 8 HOH A 75 375 99 HOH HOH . N 8 HOH A 76 376 73 HOH HOH . N 8 HOH A 77 377 8 HOH HOH . N 8 HOH A 78 378 14 HOH HOH . N 8 HOH A 79 379 153 HOH HOH . N 8 HOH A 80 380 225 HOH HOH . N 8 HOH A 81 381 309 HOH HOH . N 8 HOH A 82 382 208 HOH HOH . N 8 HOH A 83 383 101 HOH HOH . N 8 HOH A 84 384 176 HOH HOH . N 8 HOH A 85 385 12 HOH HOH . N 8 HOH A 86 386 206 HOH HOH . N 8 HOH A 87 387 15 HOH HOH . N 8 HOH A 88 388 3 HOH HOH . N 8 HOH A 89 389 56 HOH HOH . N 8 HOH A 90 390 168 HOH HOH . N 8 HOH A 91 391 88 HOH HOH . N 8 HOH A 92 392 32 HOH HOH . N 8 HOH A 93 393 115 HOH HOH . N 8 HOH A 94 394 82 HOH HOH . N 8 HOH A 95 395 17 HOH HOH . N 8 HOH A 96 396 24 HOH HOH . N 8 HOH A 97 397 102 HOH HOH . N 8 HOH A 98 398 27 HOH HOH . N 8 HOH A 99 399 138 HOH HOH . N 8 HOH A 100 400 214 HOH HOH . N 8 HOH A 101 401 36 HOH HOH . N 8 HOH A 102 402 259 HOH HOH . N 8 HOH A 103 403 23 HOH HOH . N 8 HOH A 104 404 7 HOH HOH . N 8 HOH A 105 405 62 HOH HOH . N 8 HOH A 106 406 49 HOH HOH . N 8 HOH A 107 407 84 HOH HOH . N 8 HOH A 108 408 234 HOH HOH . N 8 HOH A 109 409 98 HOH HOH . N 8 HOH A 110 410 188 HOH HOH . N 8 HOH A 111 411 217 HOH HOH . N 8 HOH A 112 412 312 HOH HOH . N 8 HOH A 113 413 169 HOH HOH . N 8 HOH A 114 414 87 HOH HOH . N 8 HOH A 115 415 218 HOH HOH . N 8 HOH A 116 416 126 HOH HOH . N 8 HOH A 117 417 221 HOH HOH . N 8 HOH A 118 418 177 HOH HOH . N 8 HOH A 119 419 181 HOH HOH . N 8 HOH A 120 420 226 HOH HOH . N 8 HOH A 121 421 4 HOH HOH . N 8 HOH A 122 422 197 HOH HOH . N 8 HOH A 123 423 122 HOH HOH . N 8 HOH A 124 424 273 HOH HOH . N 8 HOH A 125 425 144 HOH HOH . N 8 HOH A 126 426 72 HOH HOH . N 8 HOH A 127 427 53 HOH HOH . N 8 HOH A 128 428 271 HOH HOH . N 8 HOH A 129 429 288 HOH HOH . N 8 HOH A 130 430 69 HOH HOH . N 8 HOH A 131 431 35 HOH HOH . N 8 HOH A 132 432 268 HOH HOH . N 8 HOH A 133 433 154 HOH HOH . N 8 HOH A 134 434 192 HOH HOH . N 8 HOH A 135 435 75 HOH HOH . N 8 HOH A 136 436 85 HOH HOH . N 8 HOH A 137 437 123 HOH HOH . N 8 HOH A 138 438 266 HOH HOH . N 8 HOH A 139 439 299 HOH HOH . N 8 HOH A 140 440 193 HOH HOH . N 8 HOH A 141 441 129 HOH HOH . N 8 HOH A 142 442 199 HOH HOH . N 8 HOH A 143 443 202 HOH HOH . N 8 HOH A 144 444 163 HOH HOH . N 8 HOH A 145 445 25 HOH HOH . N 8 HOH A 146 446 303 HOH HOH . N 8 HOH A 147 447 267 HOH HOH . N 8 HOH A 148 448 46 HOH HOH . N 8 HOH A 149 449 222 HOH HOH . N 8 HOH A 150 450 200 HOH HOH . N 8 HOH A 151 451 146 HOH HOH . N 8 HOH A 152 452 97 HOH HOH . N 8 HOH A 153 453 319 HOH HOH . N 8 HOH A 154 454 44 HOH HOH . N 8 HOH A 155 455 269 HOH HOH . N 8 HOH A 156 456 291 HOH HOH . N 8 HOH A 157 457 190 HOH HOH . N 8 HOH A 158 458 194 HOH HOH . N 8 HOH A 159 459 161 HOH HOH . N 8 HOH A 160 460 150 HOH HOH . N 8 HOH A 161 461 272 HOH HOH . N 8 HOH A 162 462 318 HOH HOH . N 8 HOH A 163 463 33 HOH HOH . N 8 HOH A 164 464 297 HOH HOH . N 8 HOH A 165 465 94 HOH HOH . N 8 HOH A 166 466 124 HOH HOH . N 8 HOH A 167 467 50 HOH HOH . N 8 HOH A 168 468 145 HOH HOH . N 8 HOH A 169 469 20 HOH HOH . N 8 HOH A 170 470 61 HOH HOH . N 8 HOH A 171 471 298 HOH HOH . N 8 HOH A 172 472 292 HOH HOH . N 8 HOH A 173 473 48 HOH HOH . N 8 HOH A 174 474 198 HOH HOH . N 8 HOH A 175 475 68 HOH HOH . N 8 HOH A 176 476 91 HOH HOH . N 8 HOH A 177 477 182 HOH HOH . N 8 HOH A 178 478 28 HOH HOH . N 8 HOH A 179 479 83 HOH HOH . N 8 HOH A 180 480 165 HOH HOH . N 8 HOH A 181 481 133 HOH HOH . N 8 HOH A 182 482 134 HOH HOH . N 8 HOH A 183 483 196 HOH HOH . N 8 HOH A 184 484 93 HOH HOH . N 8 HOH A 185 485 201 HOH HOH . N 8 HOH A 186 486 38 HOH HOH . N 8 HOH A 187 487 78 HOH HOH . N 8 HOH A 188 488 77 HOH HOH . N 8 HOH A 189 489 121 HOH HOH . N 8 HOH A 190 490 287 HOH HOH . N 8 HOH A 191 491 275 HOH HOH . N 8 HOH A 192 492 118 HOH HOH . N 8 HOH A 193 493 136 HOH HOH . N 8 HOH A 194 494 127 HOH HOH . N 8 HOH A 195 495 106 HOH HOH . N 8 HOH A 196 496 67 HOH HOH . N 8 HOH A 197 497 52 HOH HOH . N 8 HOH A 198 498 65 HOH HOH . N 8 HOH A 199 499 180 HOH HOH . N 8 HOH A 200 500 63 HOH HOH . N 8 HOH A 201 501 152 HOH HOH . N 8 HOH A 202 502 326 HOH HOH . N 8 HOH A 203 503 135 HOH HOH . N 8 HOH A 204 504 166 HOH HOH . N 8 HOH A 205 505 119 HOH HOH . N 8 HOH A 206 506 71 HOH HOH . N 8 HOH A 207 507 64 HOH HOH . N 8 HOH A 208 508 95 HOH HOH . N 8 HOH A 209 509 278 HOH HOH . N 8 HOH A 210 510 42 HOH HOH . N 8 HOH A 211 511 286 HOH HOH . N 8 HOH A 212 512 57 HOH HOH . N 8 HOH A 213 513 148 HOH HOH . N 8 HOH A 214 514 322 HOH HOH . N 8 HOH A 215 515 289 HOH HOH . N 8 HOH A 216 516 132 HOH HOH . N 8 HOH A 217 517 137 HOH HOH . N 8 HOH A 218 518 143 HOH HOH . N 8 HOH A 219 519 162 HOH HOH . N 8 HOH A 220 520 184 HOH HOH . N 8 HOH A 221 521 285 HOH HOH . N 8 HOH A 222 522 195 HOH HOH . N 8 HOH A 223 523 114 HOH HOH . N 8 HOH A 224 524 120 HOH HOH . N 8 HOH A 225 525 323 HOH HOH . N 8 HOH A 226 526 141 HOH HOH . N 8 HOH A 227 527 108 HOH HOH . N 8 HOH A 228 528 300 HOH HOH . N 8 HOH A 229 529 296 HOH HOH . N 8 HOH A 230 530 302 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO2 . B . J 5 -11.433 24.963 -2.313 0.5 9.43 ? N NO2 209 A 1 HETATM 2 O O1 NO2 . B . J 5 -11.803 23.897 -2.079 0.5 12.85 ? O1 NO2 209 A 1 HETATM 3 O O2 NO2 . B . J 5 -11.647 26.256 -1.958 0.5 15.63 ? O2 NO2 209 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 3 #