data_5NC4
#
_model_server_result.job_id            gXB1ntbGxer28p4eIHUjyA 
_model_server_result.datetime_utc      '2024-11-27 20:55:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nc4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":802}' 
#
_entry.id    5NC4 
#
_exptl.entry_id    5NC4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              624.638 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[(5~{S})-5-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-6-[4-[[2,3-bis(oxidanyl)phenyl]carbonylamino]butylamino]-6-oxidanylidene-hexyl]-2,3-bis(oxidanyl)benzamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NC4 
_cell.length_a            86.751 
_cell.length_b            157.352 
_cell.length_c            78.108 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NC4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 487 A CYS 484 1_555 A SG CYS 494 A CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc1 B FE FE . A FE 801 1_555 C OAI 8T2 . A 8T2 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc2 B FE FE . A FE 801 1_555 C OAJ 8T2 . A 8T2 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc3 B FE FE . A FE 801 1_555 C OAH 8T2 . A 8T2 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc4 B FE FE . A FE 801 1_555 C OAF 8T2 . A 8T2 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc5 B FE FE . A FE 801 1_555 C OAG 8T2 . A 8T2 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc6 B FE FE . A FE 801 1_555 C OAE 8T2 . A 8T2 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
#
_chem_comp.formula           'C31 H36 N4 O10' 
_chem_comp.formula_weight    624.638 
_chem_comp.id                8T2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[(5~{S})-5-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-6-[4-[[2,3-bis(oxidanyl)phenyl]carbonylamino]butylamino]-6-oxidanylidene-hexyl]-2,3-bis(oxidanyl)benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAL CAR 8T2 doub 1 n y 
CAL CAO 8T2 sing 2 n y 
CAR CBQ 8T2 sing 3 n y 
OAB CBG 8T2 doub 4 n n 
CAO CBK 8T2 doub 5 n y 
CBQ CBG 8T2 sing 6 n n 
CBQ CBN 8T2 doub 7 n y 
CBG NBC 8T2 sing 8 n n 
CBK CBN 8T2 sing 9 n y 
CBK OAF 8T2 sing 10 n n 
CAV CAY 8T2 sing 11 n n 
CAV CAW 8T2 sing 12 n n 
CBN OAI 8T2 sing 13 n n 
NBC CAY 8T2 sing 14 n n 
CB CAW 8T2 sing 15 n n 
CB CA 8T2 sing 16 n n 
CA N 8T2 sing 17 n n 
CA C 8T2 sing 18 n n 
N CBH 8T2 sing 19 n n 
OAJ CBO 8T2 sing 20 n n 
CBH OAC 8T2 doub 21 n n 
CBH CBR 8T2 sing 22 n n 
CBO CBR 8T2 doub 23 n y 
CBO CBL 8T2 sing 24 n y 
CBR CAS 8T2 sing 25 n y 
OAG CBL 8T2 sing 26 n n 
CBL CAP 8T2 doub 27 n y 
O C 8T2 doub 28 n n 
CAS CAM 8T2 doub 29 n y 
CAP CAM 8T2 sing 30 n y 
C NBD 8T2 sing 31 n n 
OAE CBJ 8T2 sing 32 n n 
NBD CAZ 8T2 sing 33 n n 
OAH CBM 8T2 sing 34 n n 
CBJ CBM 8T2 doub 35 n y 
CBJ CAN 8T2 sing 36 n y 
CAZ CAU 8T2 sing 37 n n 
CBM CBP 8T2 sing 38 n y 
CAN CAK 8T2 doub 39 n y 
CAU CAT 8T2 sing 40 n n 
NBB CBF 8T2 sing 41 n n 
NBB CAX 8T2 sing 42 n n 
CBP CBF 8T2 sing 43 n n 
CBP CAQ 8T2 doub 44 n y 
CAK CAQ 8T2 sing 45 n y 
CAT CAX 8T2 sing 46 n n 
CBF OAA 8T2 doub 47 n n 
OAI H1 8T2 sing 48 n n 
OAF H2 8T2 sing 49 n n 
CAO H3 8T2 sing 50 n n 
CAL H4 8T2 sing 51 n n 
CAR H5 8T2 sing 52 n n 
NBC H6 8T2 sing 53 n n 
CAY H7 8T2 sing 54 n n 
CAY H8 8T2 sing 55 n n 
CAV H9 8T2 sing 56 n n 
CAV H10 8T2 sing 57 n n 
CAW H11 8T2 sing 58 n n 
CAW H12 8T2 sing 59 n n 
CB H13 8T2 sing 60 n n 
CB H14 8T2 sing 61 n n 
CA H15 8T2 sing 62 n n 
N H16 8T2 sing 63 n n 
CAS H17 8T2 sing 64 n n 
CAM H18 8T2 sing 65 n n 
CAP H19 8T2 sing 66 n n 
OAG H20 8T2 sing 67 n n 
OAJ H21 8T2 sing 68 n n 
NBD H22 8T2 sing 69 n n 
CAZ H23 8T2 sing 70 n n 
CAZ H24 8T2 sing 71 n n 
CAU H25 8T2 sing 72 n n 
CAU H26 8T2 sing 73 n n 
CAT H27 8T2 sing 74 n n 
CAT H28 8T2 sing 75 n n 
CAX H29 8T2 sing 76 n n 
CAX H30 8T2 sing 77 n n 
NBB H31 8T2 sing 78 n n 
CAQ H32 8T2 sing 79 n n 
CAK H33 8T2 sing 80 n n 
CAN H34 8T2 sing 81 n n 
OAE H35 8T2 sing 82 n n 
OAH H36 8T2 sing 83 n n 
#
_atom_sites.entry_id                     5NC4 
_atom_sites.fract_transf_matrix[1][1]    0.011527 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006355 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012803 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 801 1 FE FE . 
C 3 8T2 A 1 802 1 8T2 DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAI 8T2 . . . C 3 -0.957 186.995 202.268 1 106 ? OAI 8T2 802 A 1 
HETATM 2 C CBN 8T2 . . . C 3 -0.402 186.596 201.078 1 128.73 ? CBN 8T2 802 A 1 
HETATM 3 C CBK 8T2 . . . C 3 0.992 186.705 200.953 1 120.62 ? CBK 8T2 802 A 1 
HETATM 4 O OAF 8T2 . . . C 3 1.69 187.199 202.022 1 101.98 ? OAF 8T2 802 A 1 
HETATM 5 C CAO 8T2 . . . C 3 1.624 186.339 199.768 1 120.66 ? CAO 8T2 802 A 1 
HETATM 6 C CAL 8T2 . . . C 3 0.839 185.865 198.721 1 137.78 ? CAL 8T2 802 A 1 
HETATM 7 C CAR 8T2 . . . C 3 -0.551 185.756 198.85 1 107.62 ? CAR 8T2 802 A 1 
HETATM 8 C CBQ 8T2 . . . C 3 -1.217 186.118 200.026 1 123.12 ? CBQ 8T2 802 A 1 
HETATM 9 C CBG 8T2 . . . C 3 -2.625 185.974 200.06 1 113.45 ? CBG 8T2 802 A 1 
HETATM 10 O OAB 8T2 . . . C 3 -3.22 185.41 199.139 1 98.88 ? OAB 8T2 802 A 1 
HETATM 11 N NBC 8T2 . . . C 3 -3.28 186.532 201.095 1 103.33 ? NBC 8T2 802 A 1 
HETATM 12 C CAY 8T2 . . . C 3 -4.753 186.53 201.224 1 90.61 ? CAY 8T2 802 A 1 
HETATM 13 C CAV 8T2 . . . C 3 -5.325 187.956 201.051 1 88.02 ? CAV 8T2 802 A 1 
HETATM 14 C CAW 8T2 . . . C 3 -4.913 188.876 202.213 1 78.69 ? CAW 8T2 802 A 1 
HETATM 15 C CB 8T2 . . . C 3 -4.944 190.346 201.755 1 88.43 ? CB 8T2 802 A 1 
HETATM 16 C CA 8T2 . . . C 3 -4.635 191.336 202.921 1 113.3 ? CA 8T2 802 A 1 
HETATM 17 N N 8T2 . . . C 3 -3.191 191.314 203.246 1 101.65 ? N 8T2 802 A 1 
HETATM 18 C CBH 8T2 . . . C 3 -2.524 192.468 203.469 1 99.67 ? CBH 8T2 802 A 1 
HETATM 19 O OAC 8T2 . . . C 3 -3.113 193.539 203.626 1 91.22 ? OAC 8T2 802 A 1 
HETATM 20 C CBR 8T2 . . . C 3 -1.128 192.412 203.629 1 95.43 ? CBR 8T2 802 A 1 
HETATM 21 C CAS 8T2 . . . C 3 -0.442 193.626 203.793 1 76.49 ? CAS 8T2 802 A 1 
HETATM 22 C CAM 8T2 . . . C 3 0.947 193.635 203.952 1 97.73 ? CAM 8T2 802 A 1 
HETATM 23 C CAP 8T2 . . . C 3 1.681 192.444 203.93 1 95.41 ? CAP 8T2 802 A 1 
HETATM 24 C CBL 8T2 . . . C 3 1.012 191.229 203.764 1 83.19 ? CBL 8T2 802 A 1 
HETATM 25 O OAG 8T2 . . . C 3 1.666 190.029 203.709 1 76.47 ? OAG 8T2 802 A 1 
HETATM 26 C CBO 8T2 . . . C 3 -0.375 191.223 203.619 1 78.53 ? CBO 8T2 802 A 1 
HETATM 27 O OAJ 8T2 . . . C 3 -0.986 190.033 203.367 1 77.64 ? OAJ 8T2 802 A 1 
HETATM 28 C C 8T2 . . . C 3 -5.62 191.049 204.08 1 129 ? C 8T2 802 A 1 
HETATM 29 O O 8T2 . . . C 3 -6.773 190.749 203.772 1 156.71 ? O 8T2 802 A 1 
HETATM 30 N NBD 8T2 . . . C 3 -5.234 191.009 205.377 1 122.88 ? NBD 8T2 802 A 1 
HETATM 31 C CAZ 8T2 . . . C 3 -4.005 191.543 205.978 1 126.32 ? CAZ 8T2 802 A 1 
HETATM 32 C CAU 8T2 . . . C 3 -4.201 191.646 207.501 1 105.4 ? CAU 8T2 802 A 1 
HETATM 33 C CAT 8T2 . . . C 3 -3.498 190.478 208.187 1 111.41 ? CAT 8T2 802 A 1 
HETATM 34 C CAX 8T2 . . . C 3 -1.994 190.784 208.243 1 127.94 ? CAX 8T2 802 A 1 
HETATM 35 N NBB 8T2 . . . C 3 -1.185 189.709 207.64 1 124.24 ? NBB 8T2 802 A 1 
HETATM 36 C CBF 8T2 . . . C 3 -1.061 188.509 208.236 1 145.8 ? CBF 8T2 802 A 1 
HETATM 37 O OAA 8T2 . . . C 3 -1.703 188.206 209.243 1 150.28 ? OAA 8T2 802 A 1 
HETATM 38 C CBP 8T2 . . . C 3 -0.115 187.619 207.701 1 136.44 ? CBP 8T2 802 A 1 
HETATM 39 C CAQ 8T2 . . . C 3 0.573 186.756 208.566 1 120.52 ? CAQ 8T2 802 A 1 
HETATM 40 C CAK 8T2 . . . C 3 1.515 185.845 208.085 1 125.8 ? CAK 8T2 802 A 1 
HETATM 41 C CAN 8T2 . . . C 3 1.802 185.806 206.723 1 141.16 ? CAN 8T2 802 A 1 
HETATM 42 C CBJ 8T2 . . . C 3 1.144 186.675 205.842 1 130.44 ? CBJ 8T2 802 A 1 
HETATM 43 O OAE 8T2 . . . C 3 1.376 186.715 204.49 1 86.77 ? OAE 8T2 802 A 1 
HETATM 44 C CBM 8T2 . . . C 3 0.193 187.564 206.336 1 121.41 ? CBM 8T2 802 A 1 
HETATM 45 O OAH 8T2 . . . C 3 -0.445 188.395 205.453 1 111.33 ? OAH 8T2 802 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           45 
#