data_5NC5 # _model_server_result.job_id no6Wj0qxC-eLjHDUW6Fv2Q _model_server_result.datetime_utc '2024-11-22 13:28:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1103}' # _entry.id 5NC5 # _exptl.entry_id 5NC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NC5 _cell.length_a 147.245 _cell.length_b 167.646 _cell.length_c 249.98 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 T N N ? 5 Z N N ? 5 QA N N ? 5 UA N N ? 5 XA N N ? 5 YA N N ? 5 ZA N N # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 114 n n C1 H11 D12 sing 115 n n C1 H12 D12 sing 116 n n C1 H13 D12 sing 117 n n C2 C3 D12 sing 118 n n C2 H21 D12 sing 119 n n C2 H22 D12 sing 120 n n C3 C4 D12 sing 121 n n C3 H31 D12 sing 122 n n C3 H32 D12 sing 123 n n C4 C5 D12 sing 124 n n C4 H41 D12 sing 125 n n C4 H42 D12 sing 126 n n C5 C6 D12 sing 127 n n C5 H51 D12 sing 128 n n C5 H52 D12 sing 129 n n C6 C7 D12 sing 130 n n C6 H61 D12 sing 131 n n C6 H62 D12 sing 132 n n C7 C8 D12 sing 133 n n C7 H71 D12 sing 134 n n C7 H72 D12 sing 135 n n C8 C9 D12 sing 136 n n C8 H81 D12 sing 137 n n C8 H82 D12 sing 138 n n C9 C10 D12 sing 139 n n C9 H91 D12 sing 140 n n C9 H92 D12 sing 141 n n C10 C11 D12 sing 142 n n C10 H101 D12 sing 143 n n C10 H102 D12 sing 144 n n C11 C12 D12 sing 145 n n C11 H111 D12 sing 146 n n C11 H112 D12 sing 147 n n C12 H121 D12 sing 148 n n C12 H122 D12 sing 149 n n C12 H123 D12 sing 150 n n # _atom_sites.entry_id 5NC5 _atom_sites.fract_transf_matrix[1][1] 0.006791 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 LMT A 1 1101 1101 LMT LMT . J 4 LMT A 1 1102 1103 LMT LMT . K 5 D12 A 1 1103 1106 D12 D12 . L 6 D10 A 1 1104 1108 D10 D10 . M 6 D10 A 1 1105 1109 D10 D10 . N 6 D10 A 1 1106 1113 D10 D10 . O 7 DD9 A 1 1107 1116 DD9 D10 . P 6 D10 A 1 1108 1120 D10 D10 . Q 6 D10 A 1 1109 1132 D10 D10 . R 7 DD9 A 1 1110 1135 DD9 D10 . S 4 LMT A 1 1111 1101 LMT LMT . T 5 D12 A 1 1112 1107 D12 D12 . U 7 DD9 A 1 1113 1142 DD9 D10 . V 7 DD9 A 1 1114 1146 DD9 D10 . W 6 D10 B 1 1101 1111 D10 D10 . X 7 DD9 B 1 1102 1133 DD9 D10 . Y 6 D10 B 1 1103 1105 D10 D10 . Z 5 D12 B 1 1104 1108 D12 D12 . AA 6 D10 B 1 1105 1109 D10 D10 . BA 7 DD9 B 1 1106 1114 DD9 D10 . CA 7 DD9 B 1 1107 1115 DD9 D10 . DA 6 D10 B 1 1108 1117 D10 D10 . EA 7 DD9 B 1 1109 1118 DD9 D10 . FA 6 D10 B 1 1110 1119 D10 D10 . GA 6 D10 B 1 1111 1121 D10 D10 . HA 7 DD9 B 1 1112 1122 DD9 D10 . IA 6 D10 B 1 1113 1123 D10 D10 . JA 6 D10 B 1 1114 1127 D10 D10 . KA 7 DD9 B 1 1115 1134 DD9 D10 . LA 6 D10 B 1 1116 1138 D10 D10 . MA 6 D10 B 1 1117 1139 D10 D10 . NA 6 D10 B 1 1118 1140 D10 D10 . OA 7 DD9 B 1 1119 1141 DD9 D10 . PA 8 PUY B 1 1120 6409 PUY PUY . QA 5 D12 B 1 1121 1110 D12 D12 . RA 6 D10 B 1 1122 1129 D10 D10 . SA 7 DD9 C 1 1101 1136 DD9 D10 . TA 6 D10 C 1 1102 1137 D10 D10 . UA 5 D12 C 1 1103 1102 D12 D12 . VA 6 D10 C 1 1104 1104 D10 D10 . WA 9 HEX C 1 1105 1105 HEX HEX . XA 5 D12 C 1 1106 1106 D12 D12 . YA 5 D12 C 1 1107 1109 D12 D12 . ZA 5 D12 C 1 1108 1111 D12 D12 . AB 7 DD9 C 1 1109 1124 DD9 D10 . BB 7 DD9 C 1 1110 1125 DD9 D10 . CB 6 D10 C 1 1111 1126 D10 D10 . DB 6 D10 C 1 1112 1128 D10 D10 . EB 6 D10 C 1 1113 1130 D10 D10 . FB 6 D10 C 1 1114 1131 D10 D10 . GB 6 D10 C 1 1115 1143 D10 D10 . HB 6 D10 C 1 1116 1144 D10 D10 . IB 6 D10 C 1 1117 1145 D10 D10 . JB 10 HOH A 1 1201 1555 HOH HOH . JB 10 HOH A 2 1202 1571 HOH HOH . JB 10 HOH A 3 1203 1534 HOH HOH . JB 10 HOH A 4 1204 1510 HOH HOH . JB 10 HOH A 5 1205 1551 HOH HOH . JB 10 HOH A 6 1206 1592 HOH HOH . JB 10 HOH A 7 1207 1502 HOH HOH . JB 10 HOH A 8 1208 1599 HOH HOH . JB 10 HOH A 9 1209 1537 HOH HOH . JB 10 HOH A 10 1210 1591 HOH HOH . JB 10 HOH A 11 1211 1588 HOH HOH . JB 10 HOH A 12 1212 1549 HOH HOH . JB 10 HOH A 13 1213 1582 HOH HOH . JB 10 HOH A 14 1214 1535 HOH HOH . JB 10 HOH A 15 1215 1536 HOH HOH . JB 10 HOH A 16 1216 1511 HOH HOH . JB 10 HOH A 17 1217 1581 HOH HOH . JB 10 HOH A 18 1218 1580 HOH HOH . JB 10 HOH A 19 1219 1541 HOH HOH . JB 10 HOH A 20 1220 1543 HOH HOH . JB 10 HOH A 21 1221 1542 HOH HOH . JB 10 HOH A 22 1222 1594 HOH HOH . JB 10 HOH A 23 1223 1596 HOH HOH . JB 10 HOH A 24 1224 1504 HOH HOH . JB 10 HOH A 25 1225 1507 HOH HOH . JB 10 HOH A 26 1226 1554 HOH HOH . JB 10 HOH A 27 1227 1587 HOH HOH . JB 10 HOH A 28 1228 1512 HOH HOH . JB 10 HOH A 29 1229 1579 HOH HOH . JB 10 HOH A 30 1230 1550 HOH HOH . JB 10 HOH A 31 1231 1563 HOH HOH . JB 10 HOH A 32 1232 1574 HOH HOH . JB 10 HOH A 33 1233 1568 HOH HOH . JB 10 HOH A 34 1234 1589 HOH HOH . JB 10 HOH A 35 1235 1577 HOH HOH . JB 10 HOH A 36 1236 1540 HOH HOH . JB 10 HOH A 37 1237 1595 HOH HOH . JB 10 HOH A 38 1238 1573 HOH HOH . JB 10 HOH A 39 1239 1584 HOH HOH . JB 10 HOH A 40 1240 1517 HOH HOH . JB 10 HOH A 41 1241 1539 HOH HOH . JB 10 HOH A 42 1242 1552 HOH HOH . JB 10 HOH A 43 1243 1575 HOH HOH . JB 10 HOH A 44 1244 1597 HOH HOH . JB 10 HOH A 45 1245 1590 HOH HOH . JB 10 HOH A 46 1246 1516 HOH HOH . JB 10 HOH A 47 1247 1576 HOH HOH . JB 10 HOH A 48 1248 1567 HOH HOH . JB 10 HOH A 49 1249 1593 HOH HOH . JB 10 HOH A 50 1250 1538 HOH HOH . KB 10 HOH B 1 1201 1559 HOH HOH . KB 10 HOH B 2 1202 1506 HOH HOH . KB 10 HOH B 3 1203 1569 HOH HOH . KB 10 HOH B 4 1204 1553 HOH HOH . KB 10 HOH B 5 1205 1533 HOH HOH . KB 10 HOH B 6 1206 1556 HOH HOH . KB 10 HOH B 7 1207 1557 HOH HOH . KB 10 HOH B 8 1208 1501 HOH HOH . KB 10 HOH B 9 1209 1562 HOH HOH . KB 10 HOH B 10 1210 1505 HOH HOH . KB 10 HOH B 11 1211 1558 HOH HOH . KB 10 HOH B 12 1212 1578 HOH HOH . KB 10 HOH B 13 1213 1564 HOH HOH . KB 10 HOH B 14 1214 1513 HOH HOH . KB 10 HOH B 15 1215 1561 HOH HOH . KB 10 HOH B 16 1216 1514 HOH HOH . KB 10 HOH B 17 1217 1544 HOH HOH . KB 10 HOH B 18 1218 1565 HOH HOH . KB 10 HOH B 19 1219 1548 HOH HOH . KB 10 HOH B 20 1220 1545 HOH HOH . KB 10 HOH B 21 1221 1508 HOH HOH . KB 10 HOH B 22 1222 1570 HOH HOH . KB 10 HOH B 23 1223 1546 HOH HOH . KB 10 HOH B 24 1224 1509 HOH HOH . KB 10 HOH B 25 1225 1515 HOH HOH . KB 10 HOH B 26 1226 1566 HOH HOH . LB 10 HOH C 1 1201 1522 HOH HOH . LB 10 HOH C 2 1202 1524 HOH HOH . LB 10 HOH C 3 1203 1531 HOH HOH . LB 10 HOH C 4 1204 1521 HOH HOH . LB 10 HOH C 5 1205 1528 HOH HOH . LB 10 HOH C 6 1206 1525 HOH HOH . LB 10 HOH C 7 1207 1572 HOH HOH . LB 10 HOH C 8 1208 1527 HOH HOH . LB 10 HOH C 9 1209 1530 HOH HOH . LB 10 HOH C 10 1210 1529 HOH HOH . LB 10 HOH C 11 1211 1583 HOH HOH . LB 10 HOH C 12 1212 1585 HOH HOH . LB 10 HOH C 13 1213 1519 HOH HOH . LB 10 HOH C 14 1214 1526 HOH HOH . LB 10 HOH C 15 1215 1523 HOH HOH . LB 10 HOH C 16 1216 1503 HOH HOH . LB 10 HOH C 17 1217 1520 HOH HOH . LB 10 HOH C 18 1218 1598 HOH HOH . LB 10 HOH C 19 1219 1586 HOH HOH . LB 10 HOH C 20 1220 1532 HOH HOH . LB 10 HOH C 21 1221 1518 HOH HOH . MB 10 HOH D 1 201 1547 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . K 5 13.594 -1.555 -46.873 1 58.39 ? C1 D12 1103 A 1 HETATM 2 C C2 D12 . . . K 5 12.973 -1.095 -48.212 1 62.32 ? C2 D12 1103 A 1 HETATM 3 C C3 D12 . . . K 5 12.815 0.448 -48.247 1 67.58 ? C3 D12 1103 A 1 HETATM 4 C C4 D12 . . . K 5 12.535 0.941 -49.685 1 69.56 ? C4 D12 1103 A 1 HETATM 5 C C5 D12 . . . K 5 13.254 2.283 -49.98 1 69.31 ? C5 D12 1103 A 1 HETATM 6 C C6 D12 . . . K 5 12.468 3.05 -51.036 1 71.47 ? C6 D12 1103 A 1 HETATM 7 C C7 D12 . . . K 5 13.246 4.229 -51.643 1 71.71 ? C7 D12 1103 A 1 HETATM 8 C C8 D12 . . . K 5 12.468 4.77 -52.867 1 75.14 ? C8 D12 1103 A 1 HETATM 9 C C9 D12 . . . K 5 12.513 6.307 -52.946 1 75.67 ? C9 D12 1103 A 1 HETATM 10 C C10 D12 . . . K 5 12.334 6.807 -54.38 1 74.69 ? C10 D12 1103 A 1 HETATM 11 C C11 D12 . . . K 5 13.3 7.953 -54.684 1 66.74 ? C11 D12 1103 A 1 HETATM 12 C C12 D12 . . . K 5 14.579 7.333 -55.209 1 67.09 ? C12 D12 1103 A 1 HETATM 13 H H11 D12 . . . K 5 13.684 -2.521 -46.873 1 70.06 ? H11 D12 1103 A 1 HETATM 14 H H12 D12 . . . K 5 13.019 -1.284 -46.14 1 70.06 ? H12 D12 1103 A 1 HETATM 15 H H13 D12 . . . K 5 14.468 -1.148 -46.765 1 70.06 ? H13 D12 1103 A 1 HETATM 16 H H21 D12 . . . K 5 12.102 -1.508 -48.318 1 74.79 ? H21 D12 1103 A 1 HETATM 17 H H22 D12 . . . K 5 13.549 -1.373 -48.942 1 74.79 ? H22 D12 1103 A 1 HETATM 18 H H31 D12 . . . K 5 12.077 0.706 -47.672 1 81.09 ? H31 D12 1103 A 1 HETATM 19 H H32 D12 . . . K 5 13.631 0.86 -47.922 1 81.09 ? H32 D12 1103 A 1 HETATM 20 H H41 D12 . . . K 5 11.579 1.064 -49.797 1 83.47 ? H41 D12 1103 A 1 HETATM 21 H H42 D12 . . . K 5 12.844 0.272 -50.315 1 83.47 ? H42 D12 1103 A 1 HETATM 22 H H51 D12 . . . K 5 14.15 2.106 -50.307 1 83.18 ? H51 D12 1103 A 1 HETATM 23 H H52 D12 . . . K 5 13.305 2.81 -49.167 1 83.18 ? H52 D12 1103 A 1 HETATM 24 H H61 D12 . . . K 5 12.227 2.437 -51.748 1 85.76 ? H61 D12 1103 A 1 HETATM 25 H H62 D12 . . . K 5 11.656 3.39 -50.63 1 85.76 ? H62 D12 1103 A 1 HETATM 26 H H71 D12 . . . K 5 13.34 4.931 -50.981 1 86.06 ? H71 D12 1103 A 1 HETATM 27 H H72 D12 . . . K 5 14.124 3.928 -51.925 1 86.06 ? H72 D12 1103 A 1 HETATM 28 H H81 D12 . . . K 5 11.543 4.485 -52.803 1 90.17 ? H81 D12 1103 A 1 HETATM 29 H H82 D12 . . . K 5 12.856 4.402 -53.675 1 90.17 ? H82 D12 1103 A 1 HETATM 30 H H91 D12 . . . K 5 13.368 6.615 -52.608 1 90.8 ? H91 D12 1103 A 1 HETATM 31 H H92 D12 . . . K 5 11.804 6.672 -52.393 1 90.8 ? H92 D12 1103 A 1 HETATM 32 H H101 D12 . . . K 5 12.502 6.077 -54.996 1 89.62 ? H101 D12 1103 A 1 HETATM 33 H H102 D12 . . . K 5 11.423 7.12 -54.498 1 89.62 ? H102 D12 1103 A 1 HETATM 34 H H111 D12 . . . K 5 12.917 8.539 -55.356 1 80.09 ? H111 D12 1103 A 1 HETATM 35 H H112 D12 . . . K 5 13.484 8.454 -53.874 1 80.09 ? H112 D12 1103 A 1 HETATM 36 H H121 D12 . . . K 5 14.952 6.742 -54.537 1 80.5 ? H121 D12 1103 A 1 HETATM 37 H H122 D12 . . . K 5 15.218 8.034 -55.414 1 80.5 ? H122 D12 1103 A 1 HETATM 38 H H123 D12 . . . K 5 14.386 6.826 -56.014 1 80.5 ? H123 D12 1103 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 85 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 38 #