data_5NC5
#
_model_server_result.job_id            Ur4pgA9u4jDU5gArd9Qunw 
_model_server_result.datetime_utc      '2024-11-22 13:32:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nc5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"UA","auth_seq_id":1103}' 
#
_entry.id    5NC5 
#
_exptl.entry_id    5NC5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              170.335 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECANE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NC5 
_cell.length_a            147.245 
_cell.length_b            167.646 
_cell.length_c            249.98 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NC5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 T N N 
? 5 Z N N 
? 5 QA N N 
? 5 UA N N 
? 5 XA N N 
? 5 YA N N 
? 5 ZA N N 
#
_chem_comp.formula           'C12 H26' 
_chem_comp.formula_weight    170.335 
_chem_comp.id                D12 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 D12 sing 114 n n 
C1 H11 D12 sing 115 n n 
C1 H12 D12 sing 116 n n 
C1 H13 D12 sing 117 n n 
C2 C3 D12 sing 118 n n 
C2 H21 D12 sing 119 n n 
C2 H22 D12 sing 120 n n 
C3 C4 D12 sing 121 n n 
C3 H31 D12 sing 122 n n 
C3 H32 D12 sing 123 n n 
C4 C5 D12 sing 124 n n 
C4 H41 D12 sing 125 n n 
C4 H42 D12 sing 126 n n 
C5 C6 D12 sing 127 n n 
C5 H51 D12 sing 128 n n 
C5 H52 D12 sing 129 n n 
C6 C7 D12 sing 130 n n 
C6 H61 D12 sing 131 n n 
C6 H62 D12 sing 132 n n 
C7 C8 D12 sing 133 n n 
C7 H71 D12 sing 134 n n 
C7 H72 D12 sing 135 n n 
C8 C9 D12 sing 136 n n 
C8 H81 D12 sing 137 n n 
C8 H82 D12 sing 138 n n 
C9 C10 D12 sing 139 n n 
C9 H91 D12 sing 140 n n 
C9 H92 D12 sing 141 n n 
C10 C11 D12 sing 142 n n 
C10 H101 D12 sing 143 n n 
C10 H102 D12 sing 144 n n 
C11 C12 D12 sing 145 n n 
C11 H111 D12 sing 146 n n 
C11 H112 D12 sing 147 n n 
C12 H121 D12 sing 148 n n 
C12 H122 D12 sing 149 n n 
C12 H123 D12 sing 150 n n 
#
_atom_sites.entry_id                     5NC5 
_atom_sites.fract_transf_matrix[1][1]    0.006791 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005965 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 4 LMT A 1 1101 1101 LMT LMT . 
J 4 LMT A 1 1102 1103 LMT LMT . 
K 5 D12 A 1 1103 1106 D12 D12 . 
L 6 D10 A 1 1104 1108 D10 D10 . 
M 6 D10 A 1 1105 1109 D10 D10 . 
N 6 D10 A 1 1106 1113 D10 D10 . 
O 7 DD9 A 1 1107 1116 DD9 D10 . 
P 6 D10 A 1 1108 1120 D10 D10 . 
Q 6 D10 A 1 1109 1132 D10 D10 . 
R 7 DD9 A 1 1110 1135 DD9 D10 . 
S 4 LMT A 1 1111 1101 LMT LMT . 
T 5 D12 A 1 1112 1107 D12 D12 . 
U 7 DD9 A 1 1113 1142 DD9 D10 . 
V 7 DD9 A 1 1114 1146 DD9 D10 . 
W 6 D10 B 1 1101 1111 D10 D10 . 
X 7 DD9 B 1 1102 1133 DD9 D10 . 
Y 6 D10 B 1 1103 1105 D10 D10 . 
Z 5 D12 B 1 1104 1108 D12 D12 . 
AA 6 D10 B 1 1105 1109 D10 D10 . 
BA 7 DD9 B 1 1106 1114 DD9 D10 . 
CA 7 DD9 B 1 1107 1115 DD9 D10 . 
DA 6 D10 B 1 1108 1117 D10 D10 . 
EA 7 DD9 B 1 1109 1118 DD9 D10 . 
FA 6 D10 B 1 1110 1119 D10 D10 . 
GA 6 D10 B 1 1111 1121 D10 D10 . 
HA 7 DD9 B 1 1112 1122 DD9 D10 . 
IA 6 D10 B 1 1113 1123 D10 D10 . 
JA 6 D10 B 1 1114 1127 D10 D10 . 
KA 7 DD9 B 1 1115 1134 DD9 D10 . 
LA 6 D10 B 1 1116 1138 D10 D10 . 
MA 6 D10 B 1 1117 1139 D10 D10 . 
NA 6 D10 B 1 1118 1140 D10 D10 . 
OA 7 DD9 B 1 1119 1141 DD9 D10 . 
PA 8 PUY B 1 1120 6409 PUY PUY . 
QA 5 D12 B 1 1121 1110 D12 D12 . 
RA 6 D10 B 1 1122 1129 D10 D10 . 
SA 7 DD9 C 1 1101 1136 DD9 D10 . 
TA 6 D10 C 1 1102 1137 D10 D10 . 
UA 5 D12 C 1 1103 1102 D12 D12 . 
VA 6 D10 C 1 1104 1104 D10 D10 . 
WA 9 HEX C 1 1105 1105 HEX HEX . 
XA 5 D12 C 1 1106 1106 D12 D12 . 
YA 5 D12 C 1 1107 1109 D12 D12 . 
ZA 5 D12 C 1 1108 1111 D12 D12 . 
AB 7 DD9 C 1 1109 1124 DD9 D10 . 
BB 7 DD9 C 1 1110 1125 DD9 D10 . 
CB 6 D10 C 1 1111 1126 D10 D10 . 
DB 6 D10 C 1 1112 1128 D10 D10 . 
EB 6 D10 C 1 1113 1130 D10 D10 . 
FB 6 D10 C 1 1114 1131 D10 D10 . 
GB 6 D10 C 1 1115 1143 D10 D10 . 
HB 6 D10 C 1 1116 1144 D10 D10 . 
IB 6 D10 C 1 1117 1145 D10 D10 . 
JB 10 HOH A 1 1201 1555 HOH HOH . 
JB 10 HOH A 2 1202 1571 HOH HOH . 
JB 10 HOH A 3 1203 1534 HOH HOH . 
JB 10 HOH A 4 1204 1510 HOH HOH . 
JB 10 HOH A 5 1205 1551 HOH HOH . 
JB 10 HOH A 6 1206 1592 HOH HOH . 
JB 10 HOH A 7 1207 1502 HOH HOH . 
JB 10 HOH A 8 1208 1599 HOH HOH . 
JB 10 HOH A 9 1209 1537 HOH HOH . 
JB 10 HOH A 10 1210 1591 HOH HOH . 
JB 10 HOH A 11 1211 1588 HOH HOH . 
JB 10 HOH A 12 1212 1549 HOH HOH . 
JB 10 HOH A 13 1213 1582 HOH HOH . 
JB 10 HOH A 14 1214 1535 HOH HOH . 
JB 10 HOH A 15 1215 1536 HOH HOH . 
JB 10 HOH A 16 1216 1511 HOH HOH . 
JB 10 HOH A 17 1217 1581 HOH HOH . 
JB 10 HOH A 18 1218 1580 HOH HOH . 
JB 10 HOH A 19 1219 1541 HOH HOH . 
JB 10 HOH A 20 1220 1543 HOH HOH . 
JB 10 HOH A 21 1221 1542 HOH HOH . 
JB 10 HOH A 22 1222 1594 HOH HOH . 
JB 10 HOH A 23 1223 1596 HOH HOH . 
JB 10 HOH A 24 1224 1504 HOH HOH . 
JB 10 HOH A 25 1225 1507 HOH HOH . 
JB 10 HOH A 26 1226 1554 HOH HOH . 
JB 10 HOH A 27 1227 1587 HOH HOH . 
JB 10 HOH A 28 1228 1512 HOH HOH . 
JB 10 HOH A 29 1229 1579 HOH HOH . 
JB 10 HOH A 30 1230 1550 HOH HOH . 
JB 10 HOH A 31 1231 1563 HOH HOH . 
JB 10 HOH A 32 1232 1574 HOH HOH . 
JB 10 HOH A 33 1233 1568 HOH HOH . 
JB 10 HOH A 34 1234 1589 HOH HOH . 
JB 10 HOH A 35 1235 1577 HOH HOH . 
JB 10 HOH A 36 1236 1540 HOH HOH . 
JB 10 HOH A 37 1237 1595 HOH HOH . 
JB 10 HOH A 38 1238 1573 HOH HOH . 
JB 10 HOH A 39 1239 1584 HOH HOH . 
JB 10 HOH A 40 1240 1517 HOH HOH . 
JB 10 HOH A 41 1241 1539 HOH HOH . 
JB 10 HOH A 42 1242 1552 HOH HOH . 
JB 10 HOH A 43 1243 1575 HOH HOH . 
JB 10 HOH A 44 1244 1597 HOH HOH . 
JB 10 HOH A 45 1245 1590 HOH HOH . 
JB 10 HOH A 46 1246 1516 HOH HOH . 
JB 10 HOH A 47 1247 1576 HOH HOH . 
JB 10 HOH A 48 1248 1567 HOH HOH . 
JB 10 HOH A 49 1249 1593 HOH HOH . 
JB 10 HOH A 50 1250 1538 HOH HOH . 
KB 10 HOH B 1 1201 1559 HOH HOH . 
KB 10 HOH B 2 1202 1506 HOH HOH . 
KB 10 HOH B 3 1203 1569 HOH HOH . 
KB 10 HOH B 4 1204 1553 HOH HOH . 
KB 10 HOH B 5 1205 1533 HOH HOH . 
KB 10 HOH B 6 1206 1556 HOH HOH . 
KB 10 HOH B 7 1207 1557 HOH HOH . 
KB 10 HOH B 8 1208 1501 HOH HOH . 
KB 10 HOH B 9 1209 1562 HOH HOH . 
KB 10 HOH B 10 1210 1505 HOH HOH . 
KB 10 HOH B 11 1211 1558 HOH HOH . 
KB 10 HOH B 12 1212 1578 HOH HOH . 
KB 10 HOH B 13 1213 1564 HOH HOH . 
KB 10 HOH B 14 1214 1513 HOH HOH . 
KB 10 HOH B 15 1215 1561 HOH HOH . 
KB 10 HOH B 16 1216 1514 HOH HOH . 
KB 10 HOH B 17 1217 1544 HOH HOH . 
KB 10 HOH B 18 1218 1565 HOH HOH . 
KB 10 HOH B 19 1219 1548 HOH HOH . 
KB 10 HOH B 20 1220 1545 HOH HOH . 
KB 10 HOH B 21 1221 1508 HOH HOH . 
KB 10 HOH B 22 1222 1570 HOH HOH . 
KB 10 HOH B 23 1223 1546 HOH HOH . 
KB 10 HOH B 24 1224 1509 HOH HOH . 
KB 10 HOH B 25 1225 1515 HOH HOH . 
KB 10 HOH B 26 1226 1566 HOH HOH . 
LB 10 HOH C 1 1201 1522 HOH HOH . 
LB 10 HOH C 2 1202 1524 HOH HOH . 
LB 10 HOH C 3 1203 1531 HOH HOH . 
LB 10 HOH C 4 1204 1521 HOH HOH . 
LB 10 HOH C 5 1205 1528 HOH HOH . 
LB 10 HOH C 6 1206 1525 HOH HOH . 
LB 10 HOH C 7 1207 1572 HOH HOH . 
LB 10 HOH C 8 1208 1527 HOH HOH . 
LB 10 HOH C 9 1209 1530 HOH HOH . 
LB 10 HOH C 10 1210 1529 HOH HOH . 
LB 10 HOH C 11 1211 1583 HOH HOH . 
LB 10 HOH C 12 1212 1585 HOH HOH . 
LB 10 HOH C 13 1213 1519 HOH HOH . 
LB 10 HOH C 14 1214 1526 HOH HOH . 
LB 10 HOH C 15 1215 1523 HOH HOH . 
LB 10 HOH C 16 1216 1503 HOH HOH . 
LB 10 HOH C 17 1217 1520 HOH HOH . 
LB 10 HOH C 18 1218 1598 HOH HOH . 
LB 10 HOH C 19 1219 1586 HOH HOH . 
LB 10 HOH C 20 1220 1532 HOH HOH . 
LB 10 HOH C 21 1221 1518 HOH HOH . 
MB 10 HOH D 1 201 1547 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 D12 . . . UA 5 57.248 -13.792 -72.741 1 64.3 ? C1 D12 1103 C 1 
HETATM 2 C C2 D12 . . . UA 5 56.867 -12.501 -73.485 1 70.78 ? C2 D12 1103 C 1 
HETATM 3 C C3 D12 . . . UA 5 57.067 -12.543 -75.032 1 80.88 ? C3 D12 1103 C 1 
HETATM 4 C C4 D12 . . . UA 5 57.406 -11.149 -75.612 1 72.88 ? C4 D12 1103 C 1 
HETATM 5 C C5 D12 . . . UA 5 57.354 -11.064 -77.142 1 77.19 ? C5 D12 1103 C 1 
HETATM 6 C C6 D12 . . . UA 5 57.503 -9.569 -77.494 1 86.69 ? C6 D12 1103 C 1 
HETATM 7 C C7 D12 . . . UA 5 58.408 -9.191 -78.695 1 81.77 ? C7 D12 1103 C 1 
HETATM 8 C C8 D12 . . . UA 5 58.506 -7.654 -78.892 1 79.48 ? C8 D12 1103 C 1 
HETATM 9 C C9 D12 . . . UA 5 59.458 -6.954 -77.881 1 81.39 ? C9 D12 1103 C 1 
HETATM 10 C C10 D12 . . . UA 5 59.54 -5.408 -77.964 1 72.31 ? C10 D12 1103 C 1 
HETATM 11 C C11 D12 . . . UA 5 58.418 -4.688 -77.188 1 53.52 ? C11 D12 1103 C 1 
HETATM 12 C C12 D12 . . . UA 5 59.019 -3.426 -76.588 1 51.27 ? C12 D12 1103 C 1 
HETATM 13 H H11 D12 . . . UA 5 56.706 -14.526 -73.07 1 77.16 ? H11 D12 1103 C 1 
HETATM 14 H H12 D12 . . . UA 5 58.185 -13.988 -72.893 1 77.16 ? H12 D12 1103 C 1 
HETATM 15 H H13 D12 . . . UA 5 57.091 -13.675 -71.791 1 77.16 ? H13 D12 1103 C 1 
HETATM 16 H H21 D12 . . . UA 5 55.934 -12.309 -73.304 1 84.93 ? H21 D12 1103 C 1 
HETATM 17 H H22 D12 . . . UA 5 57.404 -11.775 -73.129 1 84.93 ? H22 D12 1103 C 1 
HETATM 18 H H31 D12 . . . UA 5 57.79 -13.155 -75.239 1 97.06 ? H31 D12 1103 C 1 
HETATM 19 H H32 D12 . . . UA 5 56.252 -12.867 -75.445 1 97.06 ? H32 D12 1103 C 1 
HETATM 20 H H41 D12 . . . UA 5 56.779 -10.505 -75.249 1 87.45 ? H41 D12 1103 C 1 
HETATM 21 H H42 D12 . . . UA 5 58.299 -10.906 -75.323 1 87.45 ? H42 D12 1103 C 1 
HETATM 22 H H51 D12 . . . UA 5 58.084 -11.573 -77.53 1 92.62 ? H51 D12 1103 C 1 
HETATM 23 H H52 D12 . . . UA 5 56.504 -11.4 -77.467 1 92.62 ? H52 D12 1103 C 1 
HETATM 24 H H61 D12 . . . UA 5 56.616 -9.219 -77.672 1 104.03 ? H61 D12 1103 C 1 
HETATM 25 H H62 D12 . . . UA 5 57.851 -9.116 -76.71 1 104.03 ? H62 D12 1103 C 1 
HETATM 26 H H71 D12 . . . UA 5 58.043 -9.589 -79.502 1 98.12 ? H71 D12 1103 C 1 
HETATM 27 H H72 D12 . . . UA 5 59.298 -9.547 -78.544 1 98.12 ? H72 D12 1103 C 1 
HETATM 28 H H81 D12 . . . UA 5 58.825 -7.477 -79.791 1 95.38 ? H81 D12 1103 C 1 
HETATM 29 H H82 D12 . . . UA 5 57.619 -7.273 -78.797 1 95.38 ? H82 D12 1103 C 1 
HETATM 30 H H91 D12 . . . UA 5 60.35 -7.309 -78.016 1 97.67 ? H91 D12 1103 C 1 
HETATM 31 H H92 D12 . . . UA 5 59.17 -7.191 -76.986 1 97.67 ? H92 D12 1103 C 1 
HETATM 32 H H101 D12 . . . UA 5 59.49 -5.145 -78.896 1 86.77 ? H101 D12 1103 C 1 
HETATM 33 H H102 D12 . . . UA 5 60.395 -5.124 -77.606 1 86.77 ? H102 D12 1103 C 1 
HETATM 34 H H111 D12 . . . UA 5 57.697 -4.455 -77.793 1 64.23 ? H111 D12 1103 C 1 
HETATM 35 H H112 D12 . . . UA 5 58.084 -5.263 -76.482 1 64.23 ? H112 D12 1103 C 1 
HETATM 36 H H121 D12 . . . UA 5 59.745 -3.666 -75.991 1 61.53 ? H121 D12 1103 C 1 
HETATM 37 H H122 D12 . . . UA 5 59.359 -2.86 -77.299 1 61.53 ? H122 D12 1103 C 1 
HETATM 38 H H123 D12 . . . UA 5 58.337 -2.947 -76.092 1 61.53 ? H123 D12 1103 C 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    59 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           38 
#