data_5NC5 # _model_server_result.job_id Nt30DNXNVkxdzuQiVEV7Bw _model_server_result.datetime_utc '2024-11-22 13:18:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1109}' # _entry.id 5NC5 # _exptl.entry_id 5NC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.282 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 26 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NC5 _cell.length_a 147.245 _cell.length_b 167.646 _cell.length_c 249.98 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 M N N ? 6 N N N ? 6 P N N ? 6 Q N N ? 6 W N N ? 6 Y N N ? 6 AA N N ? 6 DA N N ? 6 FA N N ? 6 GA N N ? 6 IA N N ? 6 JA N N ? 6 LA N N ? 6 MA N N ? 6 NA N N ? 6 RA N N ? 6 TA N N ? 6 VA N N ? 6 CB N N ? 6 DB N N ? 6 EB N N ? 6 FB N N ? 6 GB N N ? 6 HB N N ? 6 IB N N # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 83 n n C1 H11 D10 sing 84 n n C1 H12 D10 sing 85 n n C1 H13 D10 sing 86 n n C2 C3 D10 sing 87 n n C2 H21 D10 sing 88 n n C2 H22 D10 sing 89 n n C3 C4 D10 sing 90 n n C3 H31 D10 sing 91 n n C3 H32 D10 sing 92 n n C4 C5 D10 sing 93 n n C4 H41 D10 sing 94 n n C4 H42 D10 sing 95 n n C5 C6 D10 sing 96 n n C5 H51 D10 sing 97 n n C5 H52 D10 sing 98 n n C6 C7 D10 sing 99 n n C6 H61 D10 sing 100 n n C6 H62 D10 sing 101 n n C7 C8 D10 sing 102 n n C7 H71 D10 sing 103 n n C7 H72 D10 sing 104 n n C8 C9 D10 sing 105 n n C8 H81 D10 sing 106 n n C8 H82 D10 sing 107 n n C9 C10 D10 sing 108 n n C9 H91 D10 sing 109 n n C9 H92 D10 sing 110 n n C10 H101 D10 sing 111 n n C10 H102 D10 sing 112 n n C10 H103 D10 sing 113 n n # _atom_sites.entry_id 5NC5 _atom_sites.fract_transf_matrix[1][1] 0.006791 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 LMT A 1 1101 1101 LMT LMT . J 4 LMT A 1 1102 1103 LMT LMT . K 5 D12 A 1 1103 1106 D12 D12 . L 6 D10 A 1 1104 1108 D10 D10 . M 6 D10 A 1 1105 1109 D10 D10 . N 6 D10 A 1 1106 1113 D10 D10 . O 7 DD9 A 1 1107 1116 DD9 D10 . P 6 D10 A 1 1108 1120 D10 D10 . Q 6 D10 A 1 1109 1132 D10 D10 . R 7 DD9 A 1 1110 1135 DD9 D10 . S 4 LMT A 1 1111 1101 LMT LMT . T 5 D12 A 1 1112 1107 D12 D12 . U 7 DD9 A 1 1113 1142 DD9 D10 . V 7 DD9 A 1 1114 1146 DD9 D10 . W 6 D10 B 1 1101 1111 D10 D10 . X 7 DD9 B 1 1102 1133 DD9 D10 . Y 6 D10 B 1 1103 1105 D10 D10 . Z 5 D12 B 1 1104 1108 D12 D12 . AA 6 D10 B 1 1105 1109 D10 D10 . BA 7 DD9 B 1 1106 1114 DD9 D10 . CA 7 DD9 B 1 1107 1115 DD9 D10 . DA 6 D10 B 1 1108 1117 D10 D10 . EA 7 DD9 B 1 1109 1118 DD9 D10 . FA 6 D10 B 1 1110 1119 D10 D10 . GA 6 D10 B 1 1111 1121 D10 D10 . HA 7 DD9 B 1 1112 1122 DD9 D10 . IA 6 D10 B 1 1113 1123 D10 D10 . JA 6 D10 B 1 1114 1127 D10 D10 . KA 7 DD9 B 1 1115 1134 DD9 D10 . LA 6 D10 B 1 1116 1138 D10 D10 . MA 6 D10 B 1 1117 1139 D10 D10 . NA 6 D10 B 1 1118 1140 D10 D10 . OA 7 DD9 B 1 1119 1141 DD9 D10 . PA 8 PUY B 1 1120 6409 PUY PUY . QA 5 D12 B 1 1121 1110 D12 D12 . RA 6 D10 B 1 1122 1129 D10 D10 . SA 7 DD9 C 1 1101 1136 DD9 D10 . TA 6 D10 C 1 1102 1137 D10 D10 . UA 5 D12 C 1 1103 1102 D12 D12 . VA 6 D10 C 1 1104 1104 D10 D10 . WA 9 HEX C 1 1105 1105 HEX HEX . XA 5 D12 C 1 1106 1106 D12 D12 . YA 5 D12 C 1 1107 1109 D12 D12 . ZA 5 D12 C 1 1108 1111 D12 D12 . AB 7 DD9 C 1 1109 1124 DD9 D10 . BB 7 DD9 C 1 1110 1125 DD9 D10 . CB 6 D10 C 1 1111 1126 D10 D10 . DB 6 D10 C 1 1112 1128 D10 D10 . EB 6 D10 C 1 1113 1130 D10 D10 . FB 6 D10 C 1 1114 1131 D10 D10 . GB 6 D10 C 1 1115 1143 D10 D10 . HB 6 D10 C 1 1116 1144 D10 D10 . IB 6 D10 C 1 1117 1145 D10 D10 . JB 10 HOH A 1 1201 1555 HOH HOH . JB 10 HOH A 2 1202 1571 HOH HOH . JB 10 HOH A 3 1203 1534 HOH HOH . JB 10 HOH A 4 1204 1510 HOH HOH . JB 10 HOH A 5 1205 1551 HOH HOH . JB 10 HOH A 6 1206 1592 HOH HOH . JB 10 HOH A 7 1207 1502 HOH HOH . JB 10 HOH A 8 1208 1599 HOH HOH . JB 10 HOH A 9 1209 1537 HOH HOH . JB 10 HOH A 10 1210 1591 HOH HOH . JB 10 HOH A 11 1211 1588 HOH HOH . JB 10 HOH A 12 1212 1549 HOH HOH . JB 10 HOH A 13 1213 1582 HOH HOH . JB 10 HOH A 14 1214 1535 HOH HOH . JB 10 HOH A 15 1215 1536 HOH HOH . JB 10 HOH A 16 1216 1511 HOH HOH . JB 10 HOH A 17 1217 1581 HOH HOH . JB 10 HOH A 18 1218 1580 HOH HOH . JB 10 HOH A 19 1219 1541 HOH HOH . JB 10 HOH A 20 1220 1543 HOH HOH . JB 10 HOH A 21 1221 1542 HOH HOH . JB 10 HOH A 22 1222 1594 HOH HOH . JB 10 HOH A 23 1223 1596 HOH HOH . JB 10 HOH A 24 1224 1504 HOH HOH . JB 10 HOH A 25 1225 1507 HOH HOH . JB 10 HOH A 26 1226 1554 HOH HOH . JB 10 HOH A 27 1227 1587 HOH HOH . JB 10 HOH A 28 1228 1512 HOH HOH . JB 10 HOH A 29 1229 1579 HOH HOH . JB 10 HOH A 30 1230 1550 HOH HOH . JB 10 HOH A 31 1231 1563 HOH HOH . JB 10 HOH A 32 1232 1574 HOH HOH . JB 10 HOH A 33 1233 1568 HOH HOH . JB 10 HOH A 34 1234 1589 HOH HOH . JB 10 HOH A 35 1235 1577 HOH HOH . JB 10 HOH A 36 1236 1540 HOH HOH . JB 10 HOH A 37 1237 1595 HOH HOH . JB 10 HOH A 38 1238 1573 HOH HOH . JB 10 HOH A 39 1239 1584 HOH HOH . JB 10 HOH A 40 1240 1517 HOH HOH . JB 10 HOH A 41 1241 1539 HOH HOH . JB 10 HOH A 42 1242 1552 HOH HOH . JB 10 HOH A 43 1243 1575 HOH HOH . JB 10 HOH A 44 1244 1597 HOH HOH . JB 10 HOH A 45 1245 1590 HOH HOH . JB 10 HOH A 46 1246 1516 HOH HOH . JB 10 HOH A 47 1247 1576 HOH HOH . JB 10 HOH A 48 1248 1567 HOH HOH . JB 10 HOH A 49 1249 1593 HOH HOH . JB 10 HOH A 50 1250 1538 HOH HOH . KB 10 HOH B 1 1201 1559 HOH HOH . KB 10 HOH B 2 1202 1506 HOH HOH . KB 10 HOH B 3 1203 1569 HOH HOH . KB 10 HOH B 4 1204 1553 HOH HOH . KB 10 HOH B 5 1205 1533 HOH HOH . KB 10 HOH B 6 1206 1556 HOH HOH . KB 10 HOH B 7 1207 1557 HOH HOH . KB 10 HOH B 8 1208 1501 HOH HOH . KB 10 HOH B 9 1209 1562 HOH HOH . KB 10 HOH B 10 1210 1505 HOH HOH . KB 10 HOH B 11 1211 1558 HOH HOH . KB 10 HOH B 12 1212 1578 HOH HOH . KB 10 HOH B 13 1213 1564 HOH HOH . KB 10 HOH B 14 1214 1513 HOH HOH . KB 10 HOH B 15 1215 1561 HOH HOH . KB 10 HOH B 16 1216 1514 HOH HOH . KB 10 HOH B 17 1217 1544 HOH HOH . KB 10 HOH B 18 1218 1565 HOH HOH . KB 10 HOH B 19 1219 1548 HOH HOH . KB 10 HOH B 20 1220 1545 HOH HOH . KB 10 HOH B 21 1221 1508 HOH HOH . KB 10 HOH B 22 1222 1570 HOH HOH . KB 10 HOH B 23 1223 1546 HOH HOH . KB 10 HOH B 24 1224 1509 HOH HOH . KB 10 HOH B 25 1225 1515 HOH HOH . KB 10 HOH B 26 1226 1566 HOH HOH . LB 10 HOH C 1 1201 1522 HOH HOH . LB 10 HOH C 2 1202 1524 HOH HOH . LB 10 HOH C 3 1203 1531 HOH HOH . LB 10 HOH C 4 1204 1521 HOH HOH . LB 10 HOH C 5 1205 1528 HOH HOH . LB 10 HOH C 6 1206 1525 HOH HOH . LB 10 HOH C 7 1207 1572 HOH HOH . LB 10 HOH C 8 1208 1527 HOH HOH . LB 10 HOH C 9 1209 1530 HOH HOH . LB 10 HOH C 10 1210 1529 HOH HOH . LB 10 HOH C 11 1211 1583 HOH HOH . LB 10 HOH C 12 1212 1585 HOH HOH . LB 10 HOH C 13 1213 1519 HOH HOH . LB 10 HOH C 14 1214 1526 HOH HOH . LB 10 HOH C 15 1215 1523 HOH HOH . LB 10 HOH C 16 1216 1503 HOH HOH . LB 10 HOH C 17 1217 1520 HOH HOH . LB 10 HOH C 18 1218 1598 HOH HOH . LB 10 HOH C 19 1219 1586 HOH HOH . LB 10 HOH C 20 1220 1532 HOH HOH . LB 10 HOH C 21 1221 1518 HOH HOH . MB 10 HOH D 1 201 1547 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . Q 6 38.037 -16.379 -37.228 1 66.2 ? C1 D10 1109 A 1 HETATM 2 C C2 D10 . . . Q 6 37.085 -15.626 -38.165 1 75.76 ? C2 D10 1109 A 1 HETATM 3 C C3 D10 . . . Q 6 37.817 -14.905 -39.318 1 78.74 ? C3 D10 1109 A 1 HETATM 4 C C4 D10 . . . Q 6 37.729 -13.357 -39.213 1 79.3 ? C4 D10 1109 A 1 HETATM 5 C C5 D10 . . . Q 6 38.1 -12.642 -40.537 1 87.84 ? C5 D10 1109 A 1 HETATM 6 C C6 D10 . . . Q 6 36.934 -11.864 -41.218 1 86.01 ? C6 D10 1109 A 1 HETATM 7 C C7 D10 . . . Q 6 37.32 -11.25 -42.593 1 85.48 ? C7 D10 1109 A 1 HETATM 8 C C8 D10 . . . Q 6 36.893 -9.782 -42.836 1 82.85 ? C8 D10 1109 A 1 HETATM 9 C C9 D10 . . . Q 6 37.76 -9.106 -43.938 1 83.06 ? C9 D10 1109 A 1 HETATM 10 C C10 D10 . . . Q 6 36.974 -8.177 -44.877 1 75.97 ? C10 D10 1109 A 1 HETATM 11 H H11 D10 . . . Q 6 38.664 -15.752 -36.833 1 79.44 ? H11 D10 1109 A 1 HETATM 12 H H12 D10 . . . Q 6 37.526 -16.81 -36.525 1 79.44 ? H12 D10 1109 A 1 HETATM 13 H H13 D10 . . . Q 6 38.524 -17.049 -37.732 1 79.44 ? H13 D10 1109 A 1 HETATM 14 H H21 D10 . . . Q 6 36.594 -14.969 -37.648 1 90.91 ? H21 D10 1109 A 1 HETATM 15 H H22 D10 . . . Q 6 36.455 -16.26 -38.543 1 90.91 ? H22 D10 1109 A 1 HETATM 16 H H31 D10 . . . Q 6 38.751 -15.166 -39.306 1 94.49 ? H31 D10 1109 A 1 HETATM 17 H H32 D10 . . . Q 6 37.424 -15.184 -40.16 1 94.49 ? H32 D10 1109 A 1 HETATM 18 H H41 D10 . . . Q 6 38.332 -13.056 -38.516 1 95.16 ? H41 D10 1109 A 1 HETATM 19 H H42 D10 . . . Q 6 36.822 -13.111 -38.969 1 95.16 ? H42 D10 1109 A 1 HETATM 20 H H51 D10 . . . Q 6 38.818 -12.016 -40.354 1 105.41 ? H51 D10 1109 A 1 HETATM 21 H H52 D10 . . . Q 6 38.427 -13.308 -41.161 1 105.41 ? H52 D10 1109 A 1 HETATM 22 H H61 D10 . . . Q 6 36.19 -12.473 -41.349 1 103.22 ? H61 D10 1109 A 1 HETATM 23 H H62 D10 . . . Q 6 36.651 -11.149 -40.627 1 103.22 ? H62 D10 1109 A 1 HETATM 24 H H71 D10 . . . Q 6 38.284 -11.301 -42.683 1 102.57 ? H71 D10 1109 A 1 HETATM 25 H H72 D10 . . . Q 6 36.922 -11.797 -43.288 1 102.57 ? H72 D10 1109 A 1 HETATM 26 H H81 D10 . . . Q 6 35.963 -9.765 -43.112 1 99.42 ? H81 D10 1109 A 1 HETATM 27 H H82 D10 . . . Q 6 36.987 -9.284 -42.009 1 99.42 ? H82 D10 1109 A 1 HETATM 28 H H91 D10 . . . Q 6 38.178 -9.8 -44.47 1 99.67 ? H91 D10 1109 A 1 HETATM 29 H H92 D10 . . . Q 6 38.457 -8.587 -43.505 1 99.67 ? H92 D10 1109 A 1 HETATM 30 H H101 D10 . . . Q 6 36.284 -8.686 -45.332 1 91.16 ? H101 D10 1109 A 1 HETATM 31 H H102 D10 . . . Q 6 37.577 -7.794 -45.533 1 91.16 ? H102 D10 1109 A 1 HETATM 32 H H103 D10 . . . Q 6 36.563 -7.466 -44.361 1 91.16 ? H103 D10 1109 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #