data_5NC5 # _model_server_result.job_id eBwc2lmHmNl9-VaD1ZW0zA _model_server_result.datetime_utc '2024-11-22 13:14:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5nc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1111}' # _entry.id 5NC5 # _exptl.entry_id 5NC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NC5 _cell.length_a 147.245 _cell.length_b 167.646 _cell.length_c 249.98 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 S N N # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 309 n n C1B O1B LMT sing 310 n n C1B O5B LMT sing 311 n n C1B H1B LMT sing 312 n n C2B C3B LMT sing 313 n n C2B O2B LMT sing 314 n n C2B H2B LMT sing 315 n n C3B C4B LMT sing 316 n n C3B O3B LMT sing 317 n n C3B H3B LMT sing 318 n n C4B C5B LMT sing 319 n n C4B O4' LMT sing 320 n n C4B H4B LMT sing 321 n n C5B C6B LMT sing 322 n n C5B O5B LMT sing 323 n n C5B H5B LMT sing 324 n n C6B O6B LMT sing 325 n n C6B "H6'2" LMT sing 326 n n C6B "H6'1" LMT sing 327 n n O1B C4' LMT sing 328 n n O2B H2O1 LMT sing 329 n n O3B H3O1 LMT sing 330 n n O4' H4O1 LMT sing 331 n n O6B H6B LMT sing 332 n n C1' C2' LMT sing 333 n n C1' O1' LMT sing 334 n n C1' O5' LMT sing 335 n n C1' H1' LMT sing 336 n n C2' C3' LMT sing 337 n n C2' O2' LMT sing 338 n n C2' H2' LMT sing 339 n n C3' C4' LMT sing 340 n n C3' O3' LMT sing 341 n n C3' H3' LMT sing 342 n n C4' C5' LMT sing 343 n n C4' H4' LMT sing 344 n n C5' C6' LMT sing 345 n n C5' O5' LMT sing 346 n n C5' H5' LMT sing 347 n n C6' O6' LMT sing 348 n n C6' H6D LMT sing 349 n n C6' H6E LMT sing 350 n n O1' C1 LMT sing 351 n n O2' H2O2 LMT sing 352 n n O3' H3O2 LMT sing 353 n n O6' H6' LMT sing 354 n n C1 C2 LMT sing 355 n n C1 H12 LMT sing 356 n n C1 H11 LMT sing 357 n n C2 C3 LMT sing 358 n n C2 H22 LMT sing 359 n n C2 H21 LMT sing 360 n n C3 C4 LMT sing 361 n n C3 H32 LMT sing 362 n n C3 H31 LMT sing 363 n n C4 C5 LMT sing 364 n n C4 H42 LMT sing 365 n n C4 H41 LMT sing 366 n n C5 C6 LMT sing 367 n n C5 H52 LMT sing 368 n n C5 H51 LMT sing 369 n n C6 C7 LMT sing 370 n n C6 H62 LMT sing 371 n n C6 H61 LMT sing 372 n n C7 C8 LMT sing 373 n n C7 H72 LMT sing 374 n n C7 H71 LMT sing 375 n n C8 C9 LMT sing 376 n n C8 H82 LMT sing 377 n n C8 H81 LMT sing 378 n n C9 C10 LMT sing 379 n n C9 H92 LMT sing 380 n n C9 H91 LMT sing 381 n n C10 C11 LMT sing 382 n n C10 H102 LMT sing 383 n n C10 H101 LMT sing 384 n n C11 C12 LMT sing 385 n n C11 H112 LMT sing 386 n n C11 H111 LMT sing 387 n n C12 H123 LMT sing 388 n n C12 H122 LMT sing 389 n n C12 H121 LMT sing 390 n n # _atom_sites.entry_id 5NC5 _atom_sites.fract_transf_matrix[1][1] 0.006791 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 LMT A 1 1101 1101 LMT LMT . J 4 LMT A 1 1102 1103 LMT LMT . K 5 D12 A 1 1103 1106 D12 D12 . L 6 D10 A 1 1104 1108 D10 D10 . M 6 D10 A 1 1105 1109 D10 D10 . N 6 D10 A 1 1106 1113 D10 D10 . O 7 DD9 A 1 1107 1116 DD9 D10 . P 6 D10 A 1 1108 1120 D10 D10 . Q 6 D10 A 1 1109 1132 D10 D10 . R 7 DD9 A 1 1110 1135 DD9 D10 . S 4 LMT A 1 1111 1101 LMT LMT . T 5 D12 A 1 1112 1107 D12 D12 . U 7 DD9 A 1 1113 1142 DD9 D10 . V 7 DD9 A 1 1114 1146 DD9 D10 . W 6 D10 B 1 1101 1111 D10 D10 . X 7 DD9 B 1 1102 1133 DD9 D10 . Y 6 D10 B 1 1103 1105 D10 D10 . Z 5 D12 B 1 1104 1108 D12 D12 . AA 6 D10 B 1 1105 1109 D10 D10 . BA 7 DD9 B 1 1106 1114 DD9 D10 . CA 7 DD9 B 1 1107 1115 DD9 D10 . DA 6 D10 B 1 1108 1117 D10 D10 . EA 7 DD9 B 1 1109 1118 DD9 D10 . FA 6 D10 B 1 1110 1119 D10 D10 . GA 6 D10 B 1 1111 1121 D10 D10 . HA 7 DD9 B 1 1112 1122 DD9 D10 . IA 6 D10 B 1 1113 1123 D10 D10 . JA 6 D10 B 1 1114 1127 D10 D10 . KA 7 DD9 B 1 1115 1134 DD9 D10 . LA 6 D10 B 1 1116 1138 D10 D10 . MA 6 D10 B 1 1117 1139 D10 D10 . NA 6 D10 B 1 1118 1140 D10 D10 . OA 7 DD9 B 1 1119 1141 DD9 D10 . PA 8 PUY B 1 1120 6409 PUY PUY . QA 5 D12 B 1 1121 1110 D12 D12 . RA 6 D10 B 1 1122 1129 D10 D10 . SA 7 DD9 C 1 1101 1136 DD9 D10 . TA 6 D10 C 1 1102 1137 D10 D10 . UA 5 D12 C 1 1103 1102 D12 D12 . VA 6 D10 C 1 1104 1104 D10 D10 . WA 9 HEX C 1 1105 1105 HEX HEX . XA 5 D12 C 1 1106 1106 D12 D12 . YA 5 D12 C 1 1107 1109 D12 D12 . ZA 5 D12 C 1 1108 1111 D12 D12 . AB 7 DD9 C 1 1109 1124 DD9 D10 . BB 7 DD9 C 1 1110 1125 DD9 D10 . CB 6 D10 C 1 1111 1126 D10 D10 . DB 6 D10 C 1 1112 1128 D10 D10 . EB 6 D10 C 1 1113 1130 D10 D10 . FB 6 D10 C 1 1114 1131 D10 D10 . GB 6 D10 C 1 1115 1143 D10 D10 . HB 6 D10 C 1 1116 1144 D10 D10 . IB 6 D10 C 1 1117 1145 D10 D10 . JB 10 HOH A 1 1201 1555 HOH HOH . JB 10 HOH A 2 1202 1571 HOH HOH . JB 10 HOH A 3 1203 1534 HOH HOH . JB 10 HOH A 4 1204 1510 HOH HOH . JB 10 HOH A 5 1205 1551 HOH HOH . JB 10 HOH A 6 1206 1592 HOH HOH . JB 10 HOH A 7 1207 1502 HOH HOH . JB 10 HOH A 8 1208 1599 HOH HOH . JB 10 HOH A 9 1209 1537 HOH HOH . JB 10 HOH A 10 1210 1591 HOH HOH . JB 10 HOH A 11 1211 1588 HOH HOH . JB 10 HOH A 12 1212 1549 HOH HOH . JB 10 HOH A 13 1213 1582 HOH HOH . JB 10 HOH A 14 1214 1535 HOH HOH . JB 10 HOH A 15 1215 1536 HOH HOH . JB 10 HOH A 16 1216 1511 HOH HOH . JB 10 HOH A 17 1217 1581 HOH HOH . JB 10 HOH A 18 1218 1580 HOH HOH . JB 10 HOH A 19 1219 1541 HOH HOH . JB 10 HOH A 20 1220 1543 HOH HOH . JB 10 HOH A 21 1221 1542 HOH HOH . JB 10 HOH A 22 1222 1594 HOH HOH . JB 10 HOH A 23 1223 1596 HOH HOH . JB 10 HOH A 24 1224 1504 HOH HOH . JB 10 HOH A 25 1225 1507 HOH HOH . JB 10 HOH A 26 1226 1554 HOH HOH . JB 10 HOH A 27 1227 1587 HOH HOH . JB 10 HOH A 28 1228 1512 HOH HOH . JB 10 HOH A 29 1229 1579 HOH HOH . JB 10 HOH A 30 1230 1550 HOH HOH . JB 10 HOH A 31 1231 1563 HOH HOH . JB 10 HOH A 32 1232 1574 HOH HOH . JB 10 HOH A 33 1233 1568 HOH HOH . JB 10 HOH A 34 1234 1589 HOH HOH . JB 10 HOH A 35 1235 1577 HOH HOH . JB 10 HOH A 36 1236 1540 HOH HOH . JB 10 HOH A 37 1237 1595 HOH HOH . JB 10 HOH A 38 1238 1573 HOH HOH . JB 10 HOH A 39 1239 1584 HOH HOH . JB 10 HOH A 40 1240 1517 HOH HOH . JB 10 HOH A 41 1241 1539 HOH HOH . JB 10 HOH A 42 1242 1552 HOH HOH . JB 10 HOH A 43 1243 1575 HOH HOH . JB 10 HOH A 44 1244 1597 HOH HOH . JB 10 HOH A 45 1245 1590 HOH HOH . JB 10 HOH A 46 1246 1516 HOH HOH . JB 10 HOH A 47 1247 1576 HOH HOH . JB 10 HOH A 48 1248 1567 HOH HOH . JB 10 HOH A 49 1249 1593 HOH HOH . JB 10 HOH A 50 1250 1538 HOH HOH . KB 10 HOH B 1 1201 1559 HOH HOH . KB 10 HOH B 2 1202 1506 HOH HOH . KB 10 HOH B 3 1203 1569 HOH HOH . KB 10 HOH B 4 1204 1553 HOH HOH . KB 10 HOH B 5 1205 1533 HOH HOH . KB 10 HOH B 6 1206 1556 HOH HOH . KB 10 HOH B 7 1207 1557 HOH HOH . KB 10 HOH B 8 1208 1501 HOH HOH . KB 10 HOH B 9 1209 1562 HOH HOH . KB 10 HOH B 10 1210 1505 HOH HOH . KB 10 HOH B 11 1211 1558 HOH HOH . KB 10 HOH B 12 1212 1578 HOH HOH . KB 10 HOH B 13 1213 1564 HOH HOH . KB 10 HOH B 14 1214 1513 HOH HOH . KB 10 HOH B 15 1215 1561 HOH HOH . KB 10 HOH B 16 1216 1514 HOH HOH . KB 10 HOH B 17 1217 1544 HOH HOH . KB 10 HOH B 18 1218 1565 HOH HOH . KB 10 HOH B 19 1219 1548 HOH HOH . KB 10 HOH B 20 1220 1545 HOH HOH . KB 10 HOH B 21 1221 1508 HOH HOH . KB 10 HOH B 22 1222 1570 HOH HOH . KB 10 HOH B 23 1223 1546 HOH HOH . KB 10 HOH B 24 1224 1509 HOH HOH . KB 10 HOH B 25 1225 1515 HOH HOH . KB 10 HOH B 26 1226 1566 HOH HOH . LB 10 HOH C 1 1201 1522 HOH HOH . LB 10 HOH C 2 1202 1524 HOH HOH . LB 10 HOH C 3 1203 1531 HOH HOH . LB 10 HOH C 4 1204 1521 HOH HOH . LB 10 HOH C 5 1205 1528 HOH HOH . LB 10 HOH C 6 1206 1525 HOH HOH . LB 10 HOH C 7 1207 1572 HOH HOH . LB 10 HOH C 8 1208 1527 HOH HOH . LB 10 HOH C 9 1209 1530 HOH HOH . LB 10 HOH C 10 1210 1529 HOH HOH . LB 10 HOH C 11 1211 1583 HOH HOH . LB 10 HOH C 12 1212 1585 HOH HOH . LB 10 HOH C 13 1213 1519 HOH HOH . LB 10 HOH C 14 1214 1526 HOH HOH . LB 10 HOH C 15 1215 1523 HOH HOH . LB 10 HOH C 16 1216 1503 HOH HOH . LB 10 HOH C 17 1217 1520 HOH HOH . LB 10 HOH C 18 1218 1598 HOH HOH . LB 10 HOH C 19 1219 1586 HOH HOH . LB 10 HOH C 20 1220 1532 HOH HOH . LB 10 HOH C 21 1221 1518 HOH HOH . MB 10 HOH D 1 201 1547 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMT . . . S 4 18.613 -19.073 -43.396 1 63.05 ? C1 LMT 1111 A 1 HETATM 2 C C2 LMT . . . S 4 19.725 -19.195 -44.397 1 69.01 ? C2 LMT 1111 A 1 HETATM 3 C C3 LMT . . . S 4 20.821 -18.133 -44.394 1 71.26 ? C3 LMT 1111 A 1 HETATM 4 C C4 LMT . . . S 4 21.771 -18.292 -45.627 1 73.16 ? C4 LMT 1111 A 1 HETATM 5 C C5 LMT . . . S 4 22.479 -17.007 -46.093 1 81.21 ? C5 LMT 1111 A 1 HETATM 6 C C6 LMT . . . S 4 22.398 -16.722 -47.613 1 84.49 ? C6 LMT 1111 A 1 HETATM 7 C C7 LMT . . . S 4 23.544 -15.879 -48.143 1 82.43 ? C7 LMT 1111 A 1 HETATM 8 C C8 LMT . . . S 4 23.41 -15.614 -49.644 1 85.55 ? C8 LMT 1111 A 1 HETATM 9 C C9 LMT . . . S 4 23.932 -14.229 -50.05 1 84.44 ? C9 LMT 1111 A 1 HETATM 10 C C10 LMT . . . S 4 23.722 -13.927 -51.545 1 77.63 ? C10 LMT 1111 A 1 HETATM 11 C C11 LMT . . . S 4 25.031 -13.764 -52.29 1 75.4 ? C11 LMT 1111 A 1 HETATM 12 C C12 LMT . . . S 4 25.003 -12.661 -53.349 1 69.46 ? C12 LMT 1111 A 1 HETATM 13 H H22 LMT . . . S 4 19.329 -19.212 -45.282 1 82.82 ? H22 LMT 1111 A 1 HETATM 14 H H21 LMT . . . S 4 20.139 -20.065 -44.284 1 82.82 ? H21 LMT 1111 A 1 HETATM 15 H H32 LMT . . . S 4 21.341 -18.167 -43.575 1 85.51 ? H32 LMT 1111 A 1 HETATM 16 H H31 LMT . . . S 4 20.438 -17.241 -44.401 1 85.51 ? H31 LMT 1111 A 1 HETATM 17 H H42 LMT . . . S 4 21.267 -18.678 -46.361 1 87.79 ? H42 LMT 1111 A 1 HETATM 18 H H41 LMT . . . S 4 22.435 -18.97 -45.427 1 87.79 ? H41 LMT 1111 A 1 HETATM 19 H H52 LMT . . . S 4 23.41 -17.044 -45.825 1 97.45 ? H52 LMT 1111 A 1 HETATM 20 H H51 LMT . . . S 4 22.111 -16.254 -45.604 1 97.45 ? H51 LMT 1111 A 1 HETATM 21 H H62 LMT . . . S 4 21.555 -16.293 -47.824 1 101.38 ? H62 LMT 1111 A 1 HETATM 22 H H61 LMT . . . S 4 22.355 -17.557 -48.105 1 101.38 ? H61 LMT 1111 A 1 HETATM 23 H H72 LMT . . . S 4 24.388 -16.317 -47.952 1 98.92 ? H72 LMT 1111 A 1 HETATM 24 H H71 LMT . . . S 4 23.59 -15.044 -47.651 1 98.92 ? H71 LMT 1111 A 1 HETATM 25 H H82 LMT . . . S 4 22.481 -15.7 -49.909 1 102.66 ? H82 LMT 1111 A 1 HETATM 26 H H81 LMT . . . S 4 23.885 -16.297 -50.143 1 102.66 ? H81 LMT 1111 A 1 HETATM 27 H H92 LMT . . . S 4 24.871 -14.138 -49.828 1 101.32 ? H92 LMT 1111 A 1 HETATM 28 H H91 LMT . . . S 4 23.505 -13.545 -49.511 1 101.32 ? H91 LMT 1111 A 1 HETATM 29 H H102 LMT . . . S 4 23.181 -13.129 -51.647 1 93.15 ? H102 LMT 1111 A 1 HETATM 30 H H101 LMT . . . S 4 23.193 -14.634 -51.946 1 93.15 ? H101 LMT 1111 A 1 HETATM 31 H H112 LMT . . . S 4 25.257 -14.61 -52.707 1 90.48 ? H112 LMT 1111 A 1 HETATM 32 H H111 LMT . . . S 4 25.74 -13.585 -51.653 1 90.48 ? H111 LMT 1111 A 1 HETATM 33 H H123 LMT . . . S 4 25.848 -12.6 -53.822 1 83.36 ? H123 LMT 1111 A 1 HETATM 34 H H122 LMT . . . S 4 24.831 -11.791 -52.957 1 83.36 ? H122 LMT 1111 A 1 HETATM 35 H H121 LMT . . . S 4 24.311 -12.839 -54.005 1 83.36 ? H121 LMT 1111 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #