data_5NC5
#
_model_server_result.job_id            5yJPmNGtrb5U6t70WzgcHg 
_model_server_result.datetime_utc      '2024-11-22 12:57:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nc5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"OA","auth_seq_id":1119}' 
#
_entry.id    5NC5 
#
_exptl.entry_id    5NC5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              128.255 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            nonane 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NC5 
_cell.length_a            147.245 
_cell.length_b            167.646 
_cell.length_c            249.98 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NC5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 O N N 
? 7 R N N 
? 7 U N N 
? 7 V N N 
? 7 X N N 
? 7 BA N N 
? 7 CA N N 
? 7 EA N N 
? 7 HA N N 
? 7 KA N N 
? 7 OA N N 
? 7 SA N N 
? 7 AB N N 
? 7 BB N N 
#
_chem_comp.formula           'C9 H20' 
_chem_comp.formula_weight    128.255 
_chem_comp.id                DD9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              nonane 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 DD9 sing 151 n n 
C1 H1 DD9 sing 152 n n 
C1 H1A DD9 sing 153 n n 
C1 H1B DD9 sing 154 n n 
C3 C2 DD9 sing 155 n n 
C2 H2 DD9 sing 156 n n 
C2 H2A DD9 sing 157 n n 
C4 C3 DD9 sing 158 n n 
C3 H3 DD9 sing 159 n n 
C3 H3A DD9 sing 160 n n 
C5 C4 DD9 sing 161 n n 
C4 H4 DD9 sing 162 n n 
C4 H4A DD9 sing 163 n n 
C6 C5 DD9 sing 164 n n 
C5 H5 DD9 sing 165 n n 
C5 H5A DD9 sing 166 n n 
C7 C6 DD9 sing 167 n n 
C6 H6 DD9 sing 168 n n 
C6 H6A DD9 sing 169 n n 
C8 C7 DD9 sing 170 n n 
C7 H7 DD9 sing 171 n n 
C7 H7A DD9 sing 172 n n 
C9 C8 DD9 sing 173 n n 
C8 H8 DD9 sing 174 n n 
C8 H8A DD9 sing 175 n n 
C9 H9 DD9 sing 176 n n 
C9 H9A DD9 sing 177 n n 
C9 H9B DD9 sing 178 n n 
#
_atom_sites.entry_id                     5NC5 
_atom_sites.fract_transf_matrix[1][1]    0.006791 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005965 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 4 LMT A 1 1101 1101 LMT LMT . 
J 4 LMT A 1 1102 1103 LMT LMT . 
K 5 D12 A 1 1103 1106 D12 D12 . 
L 6 D10 A 1 1104 1108 D10 D10 . 
M 6 D10 A 1 1105 1109 D10 D10 . 
N 6 D10 A 1 1106 1113 D10 D10 . 
O 7 DD9 A 1 1107 1116 DD9 D10 . 
P 6 D10 A 1 1108 1120 D10 D10 . 
Q 6 D10 A 1 1109 1132 D10 D10 . 
R 7 DD9 A 1 1110 1135 DD9 D10 . 
S 4 LMT A 1 1111 1101 LMT LMT . 
T 5 D12 A 1 1112 1107 D12 D12 . 
U 7 DD9 A 1 1113 1142 DD9 D10 . 
V 7 DD9 A 1 1114 1146 DD9 D10 . 
W 6 D10 B 1 1101 1111 D10 D10 . 
X 7 DD9 B 1 1102 1133 DD9 D10 . 
Y 6 D10 B 1 1103 1105 D10 D10 . 
Z 5 D12 B 1 1104 1108 D12 D12 . 
AA 6 D10 B 1 1105 1109 D10 D10 . 
BA 7 DD9 B 1 1106 1114 DD9 D10 . 
CA 7 DD9 B 1 1107 1115 DD9 D10 . 
DA 6 D10 B 1 1108 1117 D10 D10 . 
EA 7 DD9 B 1 1109 1118 DD9 D10 . 
FA 6 D10 B 1 1110 1119 D10 D10 . 
GA 6 D10 B 1 1111 1121 D10 D10 . 
HA 7 DD9 B 1 1112 1122 DD9 D10 . 
IA 6 D10 B 1 1113 1123 D10 D10 . 
JA 6 D10 B 1 1114 1127 D10 D10 . 
KA 7 DD9 B 1 1115 1134 DD9 D10 . 
LA 6 D10 B 1 1116 1138 D10 D10 . 
MA 6 D10 B 1 1117 1139 D10 D10 . 
NA 6 D10 B 1 1118 1140 D10 D10 . 
OA 7 DD9 B 1 1119 1141 DD9 D10 . 
PA 8 PUY B 1 1120 6409 PUY PUY . 
QA 5 D12 B 1 1121 1110 D12 D12 . 
RA 6 D10 B 1 1122 1129 D10 D10 . 
SA 7 DD9 C 1 1101 1136 DD9 D10 . 
TA 6 D10 C 1 1102 1137 D10 D10 . 
UA 5 D12 C 1 1103 1102 D12 D12 . 
VA 6 D10 C 1 1104 1104 D10 D10 . 
WA 9 HEX C 1 1105 1105 HEX HEX . 
XA 5 D12 C 1 1106 1106 D12 D12 . 
YA 5 D12 C 1 1107 1109 D12 D12 . 
ZA 5 D12 C 1 1108 1111 D12 D12 . 
AB 7 DD9 C 1 1109 1124 DD9 D10 . 
BB 7 DD9 C 1 1110 1125 DD9 D10 . 
CB 6 D10 C 1 1111 1126 D10 D10 . 
DB 6 D10 C 1 1112 1128 D10 D10 . 
EB 6 D10 C 1 1113 1130 D10 D10 . 
FB 6 D10 C 1 1114 1131 D10 D10 . 
GB 6 D10 C 1 1115 1143 D10 D10 . 
HB 6 D10 C 1 1116 1144 D10 D10 . 
IB 6 D10 C 1 1117 1145 D10 D10 . 
JB 10 HOH A 1 1201 1555 HOH HOH . 
JB 10 HOH A 2 1202 1571 HOH HOH . 
JB 10 HOH A 3 1203 1534 HOH HOH . 
JB 10 HOH A 4 1204 1510 HOH HOH . 
JB 10 HOH A 5 1205 1551 HOH HOH . 
JB 10 HOH A 6 1206 1592 HOH HOH . 
JB 10 HOH A 7 1207 1502 HOH HOH . 
JB 10 HOH A 8 1208 1599 HOH HOH . 
JB 10 HOH A 9 1209 1537 HOH HOH . 
JB 10 HOH A 10 1210 1591 HOH HOH . 
JB 10 HOH A 11 1211 1588 HOH HOH . 
JB 10 HOH A 12 1212 1549 HOH HOH . 
JB 10 HOH A 13 1213 1582 HOH HOH . 
JB 10 HOH A 14 1214 1535 HOH HOH . 
JB 10 HOH A 15 1215 1536 HOH HOH . 
JB 10 HOH A 16 1216 1511 HOH HOH . 
JB 10 HOH A 17 1217 1581 HOH HOH . 
JB 10 HOH A 18 1218 1580 HOH HOH . 
JB 10 HOH A 19 1219 1541 HOH HOH . 
JB 10 HOH A 20 1220 1543 HOH HOH . 
JB 10 HOH A 21 1221 1542 HOH HOH . 
JB 10 HOH A 22 1222 1594 HOH HOH . 
JB 10 HOH A 23 1223 1596 HOH HOH . 
JB 10 HOH A 24 1224 1504 HOH HOH . 
JB 10 HOH A 25 1225 1507 HOH HOH . 
JB 10 HOH A 26 1226 1554 HOH HOH . 
JB 10 HOH A 27 1227 1587 HOH HOH . 
JB 10 HOH A 28 1228 1512 HOH HOH . 
JB 10 HOH A 29 1229 1579 HOH HOH . 
JB 10 HOH A 30 1230 1550 HOH HOH . 
JB 10 HOH A 31 1231 1563 HOH HOH . 
JB 10 HOH A 32 1232 1574 HOH HOH . 
JB 10 HOH A 33 1233 1568 HOH HOH . 
JB 10 HOH A 34 1234 1589 HOH HOH . 
JB 10 HOH A 35 1235 1577 HOH HOH . 
JB 10 HOH A 36 1236 1540 HOH HOH . 
JB 10 HOH A 37 1237 1595 HOH HOH . 
JB 10 HOH A 38 1238 1573 HOH HOH . 
JB 10 HOH A 39 1239 1584 HOH HOH . 
JB 10 HOH A 40 1240 1517 HOH HOH . 
JB 10 HOH A 41 1241 1539 HOH HOH . 
JB 10 HOH A 42 1242 1552 HOH HOH . 
JB 10 HOH A 43 1243 1575 HOH HOH . 
JB 10 HOH A 44 1244 1597 HOH HOH . 
JB 10 HOH A 45 1245 1590 HOH HOH . 
JB 10 HOH A 46 1246 1516 HOH HOH . 
JB 10 HOH A 47 1247 1576 HOH HOH . 
JB 10 HOH A 48 1248 1567 HOH HOH . 
JB 10 HOH A 49 1249 1593 HOH HOH . 
JB 10 HOH A 50 1250 1538 HOH HOH . 
KB 10 HOH B 1 1201 1559 HOH HOH . 
KB 10 HOH B 2 1202 1506 HOH HOH . 
KB 10 HOH B 3 1203 1569 HOH HOH . 
KB 10 HOH B 4 1204 1553 HOH HOH . 
KB 10 HOH B 5 1205 1533 HOH HOH . 
KB 10 HOH B 6 1206 1556 HOH HOH . 
KB 10 HOH B 7 1207 1557 HOH HOH . 
KB 10 HOH B 8 1208 1501 HOH HOH . 
KB 10 HOH B 9 1209 1562 HOH HOH . 
KB 10 HOH B 10 1210 1505 HOH HOH . 
KB 10 HOH B 11 1211 1558 HOH HOH . 
KB 10 HOH B 12 1212 1578 HOH HOH . 
KB 10 HOH B 13 1213 1564 HOH HOH . 
KB 10 HOH B 14 1214 1513 HOH HOH . 
KB 10 HOH B 15 1215 1561 HOH HOH . 
KB 10 HOH B 16 1216 1514 HOH HOH . 
KB 10 HOH B 17 1217 1544 HOH HOH . 
KB 10 HOH B 18 1218 1565 HOH HOH . 
KB 10 HOH B 19 1219 1548 HOH HOH . 
KB 10 HOH B 20 1220 1545 HOH HOH . 
KB 10 HOH B 21 1221 1508 HOH HOH . 
KB 10 HOH B 22 1222 1570 HOH HOH . 
KB 10 HOH B 23 1223 1546 HOH HOH . 
KB 10 HOH B 24 1224 1509 HOH HOH . 
KB 10 HOH B 25 1225 1515 HOH HOH . 
KB 10 HOH B 26 1226 1566 HOH HOH . 
LB 10 HOH C 1 1201 1522 HOH HOH . 
LB 10 HOH C 2 1202 1524 HOH HOH . 
LB 10 HOH C 3 1203 1531 HOH HOH . 
LB 10 HOH C 4 1204 1521 HOH HOH . 
LB 10 HOH C 5 1205 1528 HOH HOH . 
LB 10 HOH C 6 1206 1525 HOH HOH . 
LB 10 HOH C 7 1207 1572 HOH HOH . 
LB 10 HOH C 8 1208 1527 HOH HOH . 
LB 10 HOH C 9 1209 1530 HOH HOH . 
LB 10 HOH C 10 1210 1529 HOH HOH . 
LB 10 HOH C 11 1211 1583 HOH HOH . 
LB 10 HOH C 12 1212 1585 HOH HOH . 
LB 10 HOH C 13 1213 1519 HOH HOH . 
LB 10 HOH C 14 1214 1526 HOH HOH . 
LB 10 HOH C 15 1215 1523 HOH HOH . 
LB 10 HOH C 16 1216 1503 HOH HOH . 
LB 10 HOH C 17 1217 1520 HOH HOH . 
LB 10 HOH C 18 1218 1598 HOH HOH . 
LB 10 HOH C 19 1219 1586 HOH HOH . 
LB 10 HOH C 20 1220 1532 HOH HOH . 
LB 10 HOH C 21 1221 1518 HOH HOH . 
MB 10 HOH D 1 201 1547 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DD9 . . . OA 7 41.731 -24.302 -46.904 1 72.41 ? C1 DD9 1119 B 1 
HETATM 2 C C2 DD9 . . . OA 7 42.73 -23.146 -46.785 1 81.1 ? C2 DD9 1119 B 1 
HETATM 3 C C3 DD9 . . . OA 7 42.964 -22.36 -48.102 1 82.92 ? C3 DD9 1119 B 1 
HETATM 4 C C4 DD9 . . . OA 7 43.54 -20.938 -47.924 1 81.06 ? C4 DD9 1119 B 1 
HETATM 5 C C5 DD9 . . . OA 7 43.576 -20.134 -49.248 1 86.36 ? C5 DD9 1119 B 1 
HETATM 6 C C6 DD9 . . . OA 7 42.325 -19.3 -49.597 1 84.21 ? C6 DD9 1119 B 1 
HETATM 7 C C7 DD9 . . . OA 7 42.604 -18.177 -50.64 1 86.69 ? C7 DD9 1119 B 1 
HETATM 8 C C8 DD9 . . . OA 7 42.258 -18.523 -52.115 1 77.98 ? C8 DD9 1119 B 1 
HETATM 9 C C9 DD9 . . . OA 7 41.621 -17.391 -52.924 1 68.07 ? C9 DD9 1119 B 1 
HETATM 10 H H1 DD9 . . . OA 7 40.868 -23.957 -47.184 1 86.9 ? H1 DD9 1119 B 1 
HETATM 11 H H1A DD9 . . . OA 7 42.052 -24.94 -47.561 1 86.9 ? H1A DD9 1119 B 1 
HETATM 12 H H1B DD9 . . . OA 7 41.64 -24.742 -46.044 1 86.9 ? H1B DD9 1119 B 1 
HETATM 13 H H2 DD9 . . . OA 7 42.404 -22.527 -46.113 1 97.32 ? H2 DD9 1119 B 1 
HETATM 14 H H2A DD9 . . . OA 7 43.58 -23.505 -46.486 1 97.32 ? H2A DD9 1119 B 1 
HETATM 15 H H3 DD9 . . . OA 7 42.116 -22.289 -48.569 1 99.5 ? H3 DD9 1119 B 1 
HETATM 16 H H3A DD9 . . . OA 7 43.576 -22.87 -48.655 1 99.5 ? H3A DD9 1119 B 1 
HETATM 17 H H4 DD9 . . . OA 7 42.994 -20.458 -47.282 1 97.27 ? H4 DD9 1119 B 1 
HETATM 18 H H4A DD9 . . . OA 7 44.443 -21.008 -47.576 1 97.27 ? H4A DD9 1119 B 1 
HETATM 19 H H5 DD9 . . . OA 7 43.727 -20.761 -49.973 1 103.63 ? H5 DD9 1119 B 1 
HETATM 20 H H5A DD9 . . . OA 7 44.335 -19.531 -49.21 1 103.63 ? H5A DD9 1119 B 1 
HETATM 21 H H6 DD9 . . . OA 7 41.646 -19.893 -49.953 1 101.05 ? H6 DD9 1119 B 1 
HETATM 22 H H6A DD9 . . . OA 7 41.988 -18.891 -48.785 1 101.05 ? H6A DD9 1119 B 1 
HETATM 23 H H7 DD9 . . . OA 7 42.091 -17.394 -50.385 1 104.03 ? H7 DD9 1119 B 1 
HETATM 24 H H7A DD9 . . . OA 7 43.546 -17.951 -50.596 1 104.03 ? H7A DD9 1119 B 1 
HETATM 25 H H8 DD9 . . . OA 7 43.075 -18.794 -52.563 1 93.58 ? H8 DD9 1119 B 1 
HETATM 26 H H8A DD9 . . . OA 7 41.646 -19.276 -52.115 1 93.58 ? H8A DD9 1119 B 1 
HETATM 27 H H9A DD9 . . . OA 7 42.167 -16.593 -52.848 1 81.68 ? H9A DD9 1119 B 1 
HETATM 28 H H9B DD9 . . . OA 7 40.732 -17.209 -52.581 1 81.68 ? H9B DD9 1119 B 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    68 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           28 
#