data_5NC6
#
_model_server_result.job_id            pUHraxcVFAWcMRWjIoepBA 
_model_server_result.datetime_utc      '2024-11-28 20:15:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nc6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":303}' 
#
_entry.id    5NC6 
#
_exptl.entry_id    5NC6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.173 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TRIETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.28 
_cell.angle_gamma         90 
_cell.entry_id            5NC6 
_cell.length_a            49.358 
_cell.length_b            118.012 
_cell.length_c            98.618 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NC6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             N 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 9 A ASP 77 1_555 F ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc2 A NE2 HIS 58 A HIS 126 1_555 F ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc3 A NE2 HIS 62 A HIS 130 1_555 F ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc4 E O ACT . A ACT 301 1_555 F ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc5 E OXT ACT . A ACT 301 1_555 F ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc6 F ZN ZN . A ZN 302 1_555 O O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc7 B OD1 ASP 77 B ASP 77 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc8 B NE2 HIS 126 B HIS 126 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc9 B NE2 HIS 130 B HIS 130 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc10 H O01 8SQ . B 8SQ 301 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc11 H O02 8SQ . B 8SQ 301 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc12 I ZN ZN . B ZN 302 1_555 P O HOH . B HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc13 C OD1 ASP 77 C ASP 77 1_555 K ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc14 C OD2 ASP 77 C ASP 77 1_555 K ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc15 C NE2 HIS 126 C HIS 126 1_555 K ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc16 C NE2 HIS 130 C HIS 130 1_555 K ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc17 J O ACT . C ACT 301 1_555 K ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc18 J OXT ACT . C ACT 301 1_555 K ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc19 K ZN ZN . C ZN 302 1_555 Q O HOH . C HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc20 D OD1 ASP 77 D ASP 77 1_555 M ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc21 D NE2 HIS 126 D HIS 126 1_555 M ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc22 D NE2 HIS 130 D HIS 130 1_555 M ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc23 L O01 8SQ . D 8SQ 301 1_555 M ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc24 L O02 8SQ . D 8SQ 301 1_555 M ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc25 M ZN ZN . D ZN 302 1_555 R O HOH . D HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
#
_chem_comp.formula           'C6 H14 O4' 
_chem_comp.formula_weight    150.173 
_chem_comp.id                PGE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TRIETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PGE sing 269 n n 
C1 C2 PGE sing 270 n n 
C1 H1 PGE sing 271 n n 
C1 H12 PGE sing 272 n n 
O1 HO1 PGE sing 273 n n 
C2 O2 PGE sing 274 n n 
C2 H2 PGE sing 275 n n 
C2 H22 PGE sing 276 n n 
O2 C3 PGE sing 277 n n 
C3 C4 PGE sing 278 n n 
C3 H3 PGE sing 279 n n 
C3 H32 PGE sing 280 n n 
C4 O3 PGE sing 281 n n 
C4 H4 PGE sing 282 n n 
C4 H42 PGE sing 283 n n 
O4 C6 PGE sing 284 n n 
O4 HO4 PGE sing 285 n n 
C6 C5 PGE sing 286 n n 
C6 H6 PGE sing 287 n n 
C6 H62 PGE sing 288 n n 
C5 O3 PGE sing 289 n n 
C5 H5 PGE sing 290 n n 
C5 H52 PGE sing 291 n n 
#
_atom_sites.entry_id                     5NC6 
_atom_sites.fract_transf_matrix[1][1]    0.02026 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004409 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008474 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010377 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ACT A 1 301 300 ACT ACT . 
F 4 ZN A 1 302 280 ZN ZN . 
G 5 EDO A 1 303 1 EDO EDO . 
H 6 8SQ B 1 301 300 8SQ LIG . 
I 4 ZN B 1 302 280 ZN ZN . 
J 3 ACT C 1 301 300 ACT ACT . 
K 4 ZN C 1 302 280 ZN ZN . 
L 6 8SQ D 1 301 300 8SQ LIG . 
M 4 ZN D 1 302 280 ZN ZN . 
N 7 PGE D 1 303 1 PGE PGE . 
O 8 HOH A 1 401 40 HOH HOH . 
O 8 HOH A 2 402 16 HOH HOH . 
O 8 HOH A 3 403 87 HOH HOH . 
O 8 HOH A 4 404 41 HOH HOH . 
O 8 HOH A 5 405 48 HOH HOH . 
O 8 HOH A 6 406 23 HOH HOH . 
O 8 HOH A 7 407 38 HOH HOH . 
O 8 HOH A 8 408 29 HOH HOH . 
O 8 HOH A 9 409 12 HOH HOH . 
O 8 HOH A 10 410 70 HOH HOH . 
O 8 HOH A 11 411 53 HOH HOH . 
O 8 HOH A 12 412 51 HOH HOH . 
O 8 HOH A 13 413 57 HOH HOH . 
O 8 HOH A 14 414 54 HOH HOH . 
O 8 HOH A 15 415 81 HOH HOH . 
O 8 HOH A 16 416 65 HOH HOH . 
O 8 HOH A 17 417 63 HOH HOH . 
P 8 HOH B 1 401 36 HOH HOH . 
P 8 HOH B 2 402 46 HOH HOH . 
P 8 HOH B 3 403 69 HOH HOH . 
P 8 HOH B 4 404 80 HOH HOH . 
P 8 HOH B 5 405 9 HOH HOH . 
P 8 HOH B 6 406 45 HOH HOH . 
P 8 HOH B 7 407 44 HOH HOH . 
P 8 HOH B 8 408 68 HOH HOH . 
P 8 HOH B 9 409 13 HOH HOH . 
P 8 HOH B 10 410 85 HOH HOH . 
P 8 HOH B 11 411 24 HOH HOH . 
P 8 HOH B 12 412 37 HOH HOH . 
P 8 HOH B 13 413 26 HOH HOH . 
P 8 HOH B 14 414 5 HOH HOH . 
P 8 HOH B 15 415 10 HOH HOH . 
P 8 HOH B 16 416 64 HOH HOH . 
P 8 HOH B 17 417 78 HOH HOH . 
P 8 HOH B 18 418 19 HOH HOH . 
P 8 HOH B 19 419 47 HOH HOH . 
P 8 HOH B 20 420 25 HOH HOH . 
P 8 HOH B 21 421 66 HOH HOH . 
P 8 HOH B 22 422 74 HOH HOH . 
P 8 HOH B 23 423 60 HOH HOH . 
P 8 HOH B 24 424 55 HOH HOH . 
P 8 HOH B 25 425 22 HOH HOH . 
P 8 HOH B 26 426 18 HOH HOH . 
P 8 HOH B 27 427 67 HOH HOH . 
P 8 HOH B 28 428 71 HOH HOH . 
P 8 HOH B 29 429 83 HOH HOH . 
P 8 HOH B 30 430 84 HOH HOH . 
P 8 HOH B 31 431 75 HOH HOH . 
P 8 HOH B 32 432 82 HOH HOH . 
P 8 HOH B 33 433 76 HOH HOH . 
Q 8 HOH C 1 401 73 HOH HOH . 
Q 8 HOH C 2 402 42 HOH HOH . 
Q 8 HOH C 3 403 4 HOH HOH . 
Q 8 HOH C 4 404 58 HOH HOH . 
Q 8 HOH C 5 405 72 HOH HOH . 
Q 8 HOH C 6 406 77 HOH HOH . 
Q 8 HOH C 7 407 61 HOH HOH . 
Q 8 HOH C 8 408 86 HOH HOH . 
Q 8 HOH C 9 409 49 HOH HOH . 
Q 8 HOH C 10 410 33 HOH HOH . 
Q 8 HOH C 11 411 56 HOH HOH . 
Q 8 HOH C 12 412 59 HOH HOH . 
Q 8 HOH C 13 413 32 HOH HOH . 
Q 8 HOH C 14 414 20 HOH HOH . 
Q 8 HOH C 15 415 79 HOH HOH . 
Q 8 HOH C 16 416 21 HOH HOH . 
Q 8 HOH C 17 417 35 HOH HOH . 
Q 8 HOH C 18 418 27 HOH HOH . 
Q 8 HOH C 19 419 3 HOH HOH . 
Q 8 HOH C 20 420 17 HOH HOH . 
Q 8 HOH C 21 421 50 HOH HOH . 
Q 8 HOH C 22 422 28 HOH HOH . 
Q 8 HOH C 23 423 7 HOH HOH . 
Q 8 HOH C 24 424 1 HOH HOH . 
Q 8 HOH C 25 425 39 HOH HOH . 
R 8 HOH D 1 401 2 HOH HOH . 
R 8 HOH D 2 402 62 HOH HOH . 
R 8 HOH D 3 403 52 HOH HOH . 
R 8 HOH D 4 404 31 HOH HOH . 
R 8 HOH D 5 405 8 HOH HOH . 
R 8 HOH D 6 406 14 HOH HOH . 
R 8 HOH D 7 407 43 HOH HOH . 
R 8 HOH D 8 408 30 HOH HOH . 
R 8 HOH D 9 409 34 HOH HOH . 
R 8 HOH D 10 410 6 HOH HOH . 
R 8 HOH D 11 411 11 HOH HOH . 
R 8 HOH D 12 412 15 HOH HOH . 
R 8 HOH D 13 413 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGE . . . N 7 23.116 18.495 114.819 1 79.55 ? C1 PGE 303 D 1 
HETATM 2 O O1 PGE . . . N 7 24.007 19.278 114.051 1 80.6 ? O1 PGE 303 D 1 
HETATM 3 C C2 PGE . . . N 7 22.792 19.34 116.028 1 80.52 ? C2 PGE 303 D 1 
HETATM 4 O O2 PGE . . . N 7 23.909 20.131 116.384 1 76.22 ? O2 PGE 303 D 1 
HETATM 5 C C3 PGE . . . N 7 24.692 19.435 117.323 1 74.93 ? C3 PGE 303 D 1 
HETATM 6 C C4 PGE . . . N 7 24.926 20.174 118.629 1 75.79 ? C4 PGE 303 D 1 
HETATM 7 O O4 PGE . . . N 7 23.169 23.641 119.21 1 78.55 ? O4 PGE 303 D 1 
HETATM 8 C C6 PGE . . . N 7 24.537 23.555 119.575 1 72.81 ? C6 PGE 303 D 1 
HETATM 9 C C5 PGE . . . N 7 25.157 22.468 118.736 1 76.77 ? C5 PGE 303 D 1 
HETATM 10 O O3 PGE . . . N 7 24.241 21.398 118.664 1 80.51 ? O3 PGE 303 D 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           10 
#