data_5NCC
#
_model_server_result.job_id            xK63XNLwMz0hZAaGvjx8QA 
_model_server_result.datetime_utc      '2024-11-22 16:49:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ncc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":701}' 
#
_entry.id    5NCC 
#
_exptl.entry_id    5NCC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.28 
_cell.angle_gamma         90 
_cell.entry_id            5NCC 
_cell.length_a            94.234 
_cell.length_b            192.109 
_cell.length_c            116.127 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NCC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H 1 1 
B,I,J 2 1 
C,K,L 3 1 
D,M,N 4 1 
E,O 5 1 
F,P 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     5NCC 
_atom_sites.fract_transf_matrix[1][1]    0.010612 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004565 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005205 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009374 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 FAD A 1 701 660 FAD FAD . 
H 3 PLM A 1 702 661 PLM PLM . 
I 2 FAD B 1 701 660 FAD FAD . 
J 3 PLM B 1 702 661 PLM PLM . 
K 2 FAD C 1 701 660 FAD FAD . 
L 3 PLM C 1 702 661 PLM PLM . 
M 2 FAD D 1 701 660 FAD FAD . 
N 3 PLM D 1 702 661 PLM PLM . 
O 2 FAD E 1 701 660 FAD FAD . 
P 2 FAD F 1 701 660 FAD FAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . M 2 4.475 19.327 92.157 1 31.82 ? PA FAD 701 D 1 
HETATM 2 O O1A FAD . . . M 2 4.353 18.323 91.06 1 33.41 ? O1A FAD 701 D 1 
HETATM 3 O O2A FAD . . . M 2 4.409 20.816 91.816 1 29.08 ? O2A FAD 701 D 1 
HETATM 4 O O5B FAD . . . M 2 3.446 18.821 93.29 1 30.09 ? O5B FAD 701 D 1 
HETATM 5 C C5B FAD . . . M 2 2.278 19.518 93.634 1 32.83 ? C5B FAD 701 D 1 
HETATM 6 C C4B FAD . . . M 2 1.146 18.526 93.837 1 33.26 ? C4B FAD 701 D 1 
HETATM 7 O O4B FAD . . . M 2 0.352 18.876 94.984 1 32.34 ? O4B FAD 701 D 1 
HETATM 8 C C3B FAD . . . M 2 0.239 18.548 92.622 1 34.09 ? C3B FAD 701 D 1 
HETATM 9 O O3B FAD . . . M 2 -0.027 17.193 92.222 1 36.65 ? O3B FAD 701 D 1 
HETATM 10 C C2B FAD . . . M 2 -1.023 19.194 93.151 1 34.12 ? C2B FAD 701 D 1 
HETATM 11 O O2B FAD . . . M 2 -2.26 18.796 92.538 1 32.02 ? O2B FAD 701 D 1 
HETATM 12 C C1B FAD . . . M 2 -1.027 18.881 94.636 1 34.57 ? C1B FAD 701 D 1 
HETATM 13 N N9A FAD . . . M 2 -1.822 19.932 95.311 1 37.78 ? N9A FAD 701 D 1 
HETATM 14 C C8A FAD . . . M 2 -1.725 21.244 95.03 1 41.29 ? C8A FAD 701 D 1 
HETATM 15 N N7A FAD . . . M 2 -2.59 21.985 95.755 1 41.19 ? N7A FAD 701 D 1 
HETATM 16 C C5A FAD . . . M 2 -3.247 21.141 96.53 1 39.76 ? C5A FAD 701 D 1 
HETATM 17 C C6A FAD . . . M 2 -4.284 21.314 97.546 1 42.41 ? C6A FAD 701 D 1 
HETATM 18 N N6A FAD . . . M 2 -4.697 22.577 97.789 1 44.11 ? N6A FAD 701 D 1 
HETATM 19 N N1A FAD . . . M 2 -4.767 20.204 98.168 1 41.82 ? N1A FAD 701 D 1 
HETATM 20 C C2A FAD . . . M 2 -4.294 18.97 97.873 1 40.43 ? C2A FAD 701 D 1 
HETATM 21 N N3A FAD . . . M 2 -3.327 18.753 96.948 1 39.94 ? N3A FAD 701 D 1 
HETATM 22 C C4A FAD . . . M 2 -2.766 19.783 96.249 1 38.99 ? C4A FAD 701 D 1 
HETATM 23 N N1 FAD . . . M 2 11.875 19.64 85.556 1 33.57 ? N1 FAD 701 D 1 
HETATM 24 C C2 FAD . . . M 2 12.943 18.996 85.009 1 35.72 ? C2 FAD 701 D 1 
HETATM 25 O O2 FAD . . . M 2 13.938 18.699 85.731 1 39.25 ? O2 FAD 701 D 1 
HETATM 26 N N3 FAD . . . M 2 13.002 18.689 83.698 1 35.5 ? N3 FAD 701 D 1 
HETATM 27 C C4 FAD . . . M 2 12.007 18.965 82.844 1 35.05 ? C4 FAD 701 D 1 
HETATM 28 O O4 FAD . . . M 2 12.096 18.646 81.624 1 31.88 ? O4 FAD 701 D 1 
HETATM 29 C C4X FAD . . . M 2 10.824 19.663 83.407 1 34.43 ? C4X FAD 701 D 1 
HETATM 30 N N5 FAD . . . M 2 9.788 19.968 82.632 1 36.82 ? N5 FAD 701 D 1 
HETATM 31 C C5X FAD . . . M 2 8.691 20.569 83.136 1 36.15 ? C5X FAD 701 D 1 
HETATM 32 C C6 FAD . . . M 2 7.65 20.848 82.265 1 39.26 ? C6 FAD 701 D 1 
HETATM 33 C C7 FAD . . . M 2 6.5 21.484 82.685 1 36.28 ? C7 FAD 701 D 1 
HETATM 34 C C7M FAD . . . M 2 5.44 21.734 81.653 1 36.69 ? C7M FAD 701 D 1 
HETATM 35 C C8 FAD . . . M 2 6.383 21.873 84.114 1 35.14 ? C8 FAD 701 D 1 
HETATM 36 C C8M FAD . . . M 2 5.135 22.555 84.627 1 35.4 ? C8M FAD 701 D 1 
HETATM 37 C C9 FAD . . . M 2 7.439 21.59 84.99 1 33.01 ? C9 FAD 701 D 1 
HETATM 38 C C9A FAD . . . M 2 8.586 20.953 84.554 1 32.45 ? C9A FAD 701 D 1 
HETATM 39 N N10 FAD . . . M 2 9.658 20.646 85.401 1 33.28 ? N10 FAD 701 D 1 
HETATM 40 C C10 FAD . . . M 2 10.802 20.006 84.842 1 33.06 ? C10 FAD 701 D 1 
HETATM 41 C C1' FAD . . . M 2 9.586 21.05 86.821 1 32.72 ? C1' FAD 701 D 1 
HETATM 42 C C2' FAD . . . M 2 9.179 20.023 87.85 1 30.07 ? C2' FAD 701 D 1 
HETATM 43 O O2' FAD . . . M 2 8.078 19.264 87.36 1 32.59 ? O2' FAD 701 D 1 
HETATM 44 C C3' FAD . . . M 2 8.644 20.642 89.123 1 28.42 ? C3' FAD 701 D 1 
HETATM 45 O O3' FAD . . . M 2 9.283 21.878 89.515 1 27 ? O3' FAD 701 D 1 
HETATM 46 C C4' FAD . . . M 2 8.804 19.584 90.212 1 28.13 ? C4' FAD 701 D 1 
HETATM 47 O O4' FAD . . . M 2 8.031 18.384 89.943 1 26.61 ? O4' FAD 701 D 1 
HETATM 48 C C5' FAD . . . M 2 8.484 20.251 91.539 1 26.77 ? C5' FAD 701 D 1 
HETATM 49 O O5' FAD . . . M 2 8.112 19.299 92.499 1 27.18 ? O5' FAD 701 D 1 
HETATM 50 P P FAD . . . M 2 6.986 19.734 93.534 1 28.17 ? P FAD 701 D 1 
HETATM 51 O O1P FAD . . . M 2 7.197 19.1 94.888 1 28.55 ? O1P FAD 701 D 1 
HETATM 52 O O2P FAD . . . M 2 6.746 21.235 93.441 1 28.19 ? O2P FAD 701 D 1 
HETATM 53 O O3P FAD . . . M 2 5.859 18.829 92.835 1 30.43 ? O3P FAD 701 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           53 
#