data_5NCQ
#
_model_server_result.job_id            cjBhm06Uo4-nUhLrUupxDg 
_model_server_result.datetime_utc      '2024-11-14 16:49:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ncq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1003}' 
#
_entry.id    5NCQ 
#
_exptl.entry_id    5NCQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              787.121 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5NCQ 
_cell.length_a            125.62 
_cell.length_b            224.63 
_cell.length_c            57.05 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NCQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LYS 712 A LYS 712 1_555 C K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? 
metalc ? metalc2 A O ALA 714 A ALA 714 1_555 C K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? 
metalc ? metalc3 A OE1 GLU 732 A GLU 732 1_555 C K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? 
metalc ? metalc4 A OE2 GLU 732 A GLU 732 1_555 C K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.389 ? 
metalc ? metalc5 C K K . A K 1002 1_555 G O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? 
metalc ? metalc6 C K K . A K 1002 1_555 G O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? 
#
_chem_comp.formula           'C44 H85 N O8 P 1' 
_chem_comp.formula_weight    787.121 
_chem_comp.id                PCW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PCW sing 352 n n 
C1 O3P PCW sing 353 n n 
C1 H11 PCW sing 354 n n 
C1 H12 PCW sing 355 n n 
C2 C3 PCW sing 356 n n 
C2 O2 PCW sing 357 n n 
C2 H2 PCW sing 358 n n 
C3 O3 PCW sing 359 n n 
C3 H31 PCW sing 360 n n 
C3 H32 PCW sing 361 n n 
C4 C5 PCW sing 362 n n 
C4 O4P PCW sing 363 n n 
C4 H41 PCW sing 364 n n 
C4 H42 PCW sing 365 n n 
C5 N PCW sing 366 n n 
C5 H51 PCW sing 367 n n 
C5 H52 PCW sing 368 n n 
C6 N PCW sing 369 n n 
C6 H61 PCW sing 370 n n 
C6 H62 PCW sing 371 n n 
C6 H63 PCW sing 372 n n 
C7 N PCW sing 373 n n 
C7 H71 PCW sing 374 n n 
C7 H72 PCW sing 375 n n 
C7 H73 PCW sing 376 n n 
C8 N PCW sing 377 n n 
C8 H81 PCW sing 378 n n 
C8 H82 PCW sing 379 n n 
C8 H83 PCW sing 380 n n 
C11 C12 PCW sing 381 n n 
C11 O3 PCW sing 382 n n 
C11 O11 PCW doub 383 n n 
C12 C13 PCW sing 384 n n 
C12 H121 PCW sing 385 n n 
C12 H122 PCW sing 386 n n 
C13 C14 PCW sing 387 n n 
C13 H131 PCW sing 388 n n 
C13 H132 PCW sing 389 n n 
C14 C15 PCW sing 390 n n 
C14 H141 PCW sing 391 n n 
C14 H142 PCW sing 392 n n 
C15 C16 PCW sing 393 n n 
C15 H151 PCW sing 394 n n 
C15 H152 PCW sing 395 n n 
C16 C17 PCW sing 396 n n 
C16 H161 PCW sing 397 n n 
C16 H162 PCW sing 398 n n 
C17 C18 PCW sing 399 n n 
C17 H171 PCW sing 400 n n 
C17 H172 PCW sing 401 n n 
C18 C19 PCW sing 402 n n 
C18 H181 PCW sing 403 n n 
C18 H182 PCW sing 404 n n 
C19 C20 PCW doub 405 z n 
C19 H19 PCW sing 406 n n 
C20 C21 PCW sing 407 n n 
C20 H20 PCW sing 408 n n 
C21 C22 PCW sing 409 n n 
C21 H211 PCW sing 410 n n 
C21 H212 PCW sing 411 n n 
C22 C23 PCW sing 412 n n 
C22 H221 PCW sing 413 n n 
C22 H222 PCW sing 414 n n 
C23 C24 PCW sing 415 n n 
C23 H231 PCW sing 416 n n 
C23 H232 PCW sing 417 n n 
C24 C25 PCW sing 418 n n 
C24 H241 PCW sing 419 n n 
C24 H242 PCW sing 420 n n 
C25 C26 PCW sing 421 n n 
C25 H251 PCW sing 422 n n 
C25 H252 PCW sing 423 n n 
C26 C27 PCW sing 424 n n 
C26 H261 PCW sing 425 n n 
C26 H262 PCW sing 426 n n 
C27 C28 PCW sing 427 n n 
C27 H271 PCW sing 428 n n 
C27 H272 PCW sing 429 n n 
C28 H281 PCW sing 430 n n 
C28 H282 PCW sing 431 n n 
C28 H283 PCW sing 432 n n 
C31 C32 PCW sing 433 n n 
C31 O2 PCW sing 434 n n 
C31 O31 PCW doub 435 n n 
C32 C33 PCW sing 436 n n 
C32 H321 PCW sing 437 n n 
C32 H322 PCW sing 438 n n 
C33 C34 PCW sing 439 n n 
C33 H331 PCW sing 440 n n 
C33 H332 PCW sing 441 n n 
C34 C35 PCW sing 442 n n 
C34 H341 PCW sing 443 n n 
C34 H342 PCW sing 444 n n 
C35 C36 PCW sing 445 n n 
C35 H351 PCW sing 446 n n 
C35 H352 PCW sing 447 n n 
C36 C37 PCW sing 448 n n 
C36 H361 PCW sing 449 n n 
C36 H362 PCW sing 450 n n 
C37 C38 PCW sing 451 n n 
C37 H371 PCW sing 452 n n 
C37 H372 PCW sing 453 n n 
C38 C39 PCW sing 454 n n 
C38 H381 PCW sing 455 n n 
C38 H382 PCW sing 456 n n 
C39 C40 PCW doub 457 z n 
C39 H39 PCW sing 458 n n 
C40 C41 PCW sing 459 n n 
C40 H40 PCW sing 460 n n 
C41 C42 PCW sing 461 n n 
C41 H411 PCW sing 462 n n 
C41 H412 PCW sing 463 n n 
C42 C43 PCW sing 464 n n 
C42 H421 PCW sing 465 n n 
C42 H422 PCW sing 466 n n 
C43 C44 PCW sing 467 n n 
C43 H431 PCW sing 468 n n 
C43 H432 PCW sing 469 n n 
C44 C45 PCW sing 470 n n 
C44 H441 PCW sing 471 n n 
C44 H442 PCW sing 472 n n 
C45 C46 PCW sing 473 n n 
C45 H451 PCW sing 474 n n 
C45 H452 PCW sing 475 n n 
C46 C47 PCW sing 476 n n 
C46 H461 PCW sing 477 n n 
C46 H462 PCW sing 478 n n 
C47 C48 PCW sing 479 n n 
C47 H471 PCW sing 480 n n 
C47 H472 PCW sing 481 n n 
C48 H481 PCW sing 482 n n 
C48 H482 PCW sing 483 n n 
C48 H483 PCW sing 484 n n 
O1P P PCW sing 485 n n 
O1P H1P PCW sing 486 n n 
O2P P PCW doub 487 n n 
O3P P PCW sing 488 n n 
O4P P PCW sing 489 n n 
#
_atom_sites.entry_id                     5NCQ 
_atom_sites.fract_transf_matrix[1][1]    0.007961 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004452 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017528 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 128 A 1 1001 1001 128 128 . 
C 3 K A 1 1002 1002 K K . 
D 4 PCW A 1 1003 1005 PCW PCW . 
E 4 PCW A 1 1004 1006 PCW PCW . 
F 5 8T8 A 1 1005 1007 8T8 8T8 . 
G 6 HOH A 1 1101 1004 HOH HOH . 
G 6 HOH A 2 1102 1003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PCW . . . D 4 12.136 -12.684 -7.214 1 87.26 ? C1 PCW 1003 A 1 
HETATM 2 C C2 PCW . . . D 4 10.637 -12.667 -7.242 1 80.62 ? C2 PCW 1003 A 1 
HETATM 3 C C3 PCW . . . D 4 10.011 -12.894 -5.896 1 84.5 ? C3 PCW 1003 A 1 
HETATM 4 C C4 PCW . . . D 4 14.245 -16.152 -7.185 1 105.92 ? C4 PCW 1003 A 1 
HETATM 5 C C5 PCW . . . D 4 15.36 -16.59 -8.159 1 114.49 ? C5 PCW 1003 A 1 
HETATM 6 C C6 PCW . . . D 4 14.465 -18.884 -8.528 1 116.33 ? C6 PCW 1003 A 1 
HETATM 7 C C7 PCW . . . D 4 16.734 -18.359 -8.97 1 114.53 ? C7 PCW 1003 A 1 
HETATM 8 C C8 PCW . . . D 4 16.012 -18.404 -6.727 1 116.97 ? C8 PCW 1003 A 1 
HETATM 9 C C11 PCW . . . D 4 10.952 -11.216 -4.442 1 93.13 ? C11 PCW 1003 A 1 
HETATM 10 C C12 PCW . . . D 4 10.854 -10.972 -2.923 1 90.84 ? C12 PCW 1003 A 1 
HETATM 11 C C13 PCW . . . D 4 11.163 -9.542 -2.336 1 88.82 ? C13 PCW 1003 A 1 
HETATM 12 C C14 PCW . . . D 4 10.906 -8.283 -3.225 1 88.74 ? C14 PCW 1003 A 1 
HETATM 13 C C15 PCW . . . D 4 10.743 -6.872 -2.545 1 90.64 ? C15 PCW 1003 A 1 
HETATM 14 C C16 PCW . . . D 4 9.703 -5.891 -3.19 1 91.12 ? C16 PCW 1003 A 1 
HETATM 15 C C17 PCW . . . D 4 9.061 -4.778 -2.275 1 95.5 ? C17 PCW 1003 A 1 
HETATM 16 C C18 PCW . . . D 4 7.506 -4.535 -2.435 1 100.73 ? C18 PCW 1003 A 1 
HETATM 17 C C19 PCW . . . D 4 6.943 -3.124 -2.638 1 102.76 ? C19 PCW 1003 A 1 
HETATM 18 C C31 PCW . . . D 4 9.158 -11.07 -8.228 1 86.72 ? C31 PCW 1003 A 1 
HETATM 19 C C32 PCW . . . D 4 8.803 -9.556 -8.205 1 83.24 ? C32 PCW 1003 A 1 
HETATM 20 C C33 PCW . . . D 4 9.738 -8.518 -8.882 1 84.4 ? C33 PCW 1003 A 1 
HETATM 21 C C34 PCW . . . D 4 10.327 -7.396 -7.972 1 85.27 ? C34 PCW 1003 A 1 
HETATM 22 C C35 PCW . . . D 4 10.315 -5.936 -8.54 1 82.07 ? C35 PCW 1003 A 1 
HETATM 23 C C36 PCW . . . D 4 9.884 -4.807 -7.572 1 85.18 ? C36 PCW 1003 A 1 
HETATM 24 C C37 PCW . . . D 4 8.967 -3.692 -8.167 1 82.92 ? C37 PCW 1003 A 1 
HETATM 25 C C38 PCW . . . D 4 7.665 -3.288 -7.401 1 86.61 ? C38 PCW 1003 A 1 
HETATM 26 C C39 PCW . . . D 4 6.431 -2.948 -8.204 1 90.08 ? C39 PCW 1003 A 1 
HETATM 27 N N PCW . . . D 4 15.597 -18.053 -8.087 1 117.15 ? N PCW 1003 A 1 
HETATM 28 O O2 PCW . . . D 4 10.369 -11.289 -7.647 1 79.05 ? O2 PCW 1003 A 1 
HETATM 29 O O3 PCW . . . D 4 10.944 -12.527 -4.857 1 81.9 ? O3 PCW 1003 A 1 
HETATM 30 O O11 PCW . . . D 4 10.986 -10.312 -5.252 1 111.33 ? O11 PCW 1003 A 1 
HETATM 31 O O31 PCW . . . D 4 8.324 -11.944 -8.386 1 92.95 ? O31 PCW 1003 A 1 
HETATM 32 O O1P PCW . . . D 4 15.015 -13.49 -8.039 1 82.44 ? O1P PCW 1003 A 1 
HETATM 33 O O2P PCW . . . D 4 13.831 -14.499 -10.032 1 68.91 ? O2P PCW 1003 A 1 
HETATM 34 O O3P PCW . . . D 4 12.639 -12.955 -8.47 1 95.23 ? O3P PCW 1003 A 1 
HETATM 35 O O4P PCW . . . D 4 13.29 -15.318 -7.746 1 94.71 ? O4P PCW 1003 A 1 
HETATM 36 P P PCW . . . D 4 13.765 -14.068 -8.607 1 88 ? P PCW 1003 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           36 
#