data_5NCQ # _model_server_result.job_id IzUtEvbaVhE1iiUV6oMcIw _model_server_result.datetime_utc '2024-11-27 03:03:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ncq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1004}' # _entry.id 5NCQ # _exptl.entry_id 5NCQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.121 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5NCQ _cell.length_a 125.62 _cell.length_b 224.63 _cell.length_c 57.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NCQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 712 A LYS 712 1_555 C K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc2 A O ALA 714 A ALA 714 1_555 C K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc3 A OE1 GLU 732 A GLU 732 1_555 C K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? metalc ? metalc4 A OE2 GLU 732 A GLU 732 1_555 C K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.389 ? metalc ? metalc5 C K K . A K 1002 1_555 G O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc6 C K K . A K 1002 1_555 G O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 352 n n C1 O3P PCW sing 353 n n C1 H11 PCW sing 354 n n C1 H12 PCW sing 355 n n C2 C3 PCW sing 356 n n C2 O2 PCW sing 357 n n C2 H2 PCW sing 358 n n C3 O3 PCW sing 359 n n C3 H31 PCW sing 360 n n C3 H32 PCW sing 361 n n C4 C5 PCW sing 362 n n C4 O4P PCW sing 363 n n C4 H41 PCW sing 364 n n C4 H42 PCW sing 365 n n C5 N PCW sing 366 n n C5 H51 PCW sing 367 n n C5 H52 PCW sing 368 n n C6 N PCW sing 369 n n C6 H61 PCW sing 370 n n C6 H62 PCW sing 371 n n C6 H63 PCW sing 372 n n C7 N PCW sing 373 n n C7 H71 PCW sing 374 n n C7 H72 PCW sing 375 n n C7 H73 PCW sing 376 n n C8 N PCW sing 377 n n C8 H81 PCW sing 378 n n C8 H82 PCW sing 379 n n C8 H83 PCW sing 380 n n C11 C12 PCW sing 381 n n C11 O3 PCW sing 382 n n C11 O11 PCW doub 383 n n C12 C13 PCW sing 384 n n C12 H121 PCW sing 385 n n C12 H122 PCW sing 386 n n C13 C14 PCW sing 387 n n C13 H131 PCW sing 388 n n C13 H132 PCW sing 389 n n C14 C15 PCW sing 390 n n C14 H141 PCW sing 391 n n C14 H142 PCW sing 392 n n C15 C16 PCW sing 393 n n C15 H151 PCW sing 394 n n C15 H152 PCW sing 395 n n C16 C17 PCW sing 396 n n C16 H161 PCW sing 397 n n C16 H162 PCW sing 398 n n C17 C18 PCW sing 399 n n C17 H171 PCW sing 400 n n C17 H172 PCW sing 401 n n C18 C19 PCW sing 402 n n C18 H181 PCW sing 403 n n C18 H182 PCW sing 404 n n C19 C20 PCW doub 405 z n C19 H19 PCW sing 406 n n C20 C21 PCW sing 407 n n C20 H20 PCW sing 408 n n C21 C22 PCW sing 409 n n C21 H211 PCW sing 410 n n C21 H212 PCW sing 411 n n C22 C23 PCW sing 412 n n C22 H221 PCW sing 413 n n C22 H222 PCW sing 414 n n C23 C24 PCW sing 415 n n C23 H231 PCW sing 416 n n C23 H232 PCW sing 417 n n C24 C25 PCW sing 418 n n C24 H241 PCW sing 419 n n C24 H242 PCW sing 420 n n C25 C26 PCW sing 421 n n C25 H251 PCW sing 422 n n C25 H252 PCW sing 423 n n C26 C27 PCW sing 424 n n C26 H261 PCW sing 425 n n C26 H262 PCW sing 426 n n C27 C28 PCW sing 427 n n C27 H271 PCW sing 428 n n C27 H272 PCW sing 429 n n C28 H281 PCW sing 430 n n C28 H282 PCW sing 431 n n C28 H283 PCW sing 432 n n C31 C32 PCW sing 433 n n C31 O2 PCW sing 434 n n C31 O31 PCW doub 435 n n C32 C33 PCW sing 436 n n C32 H321 PCW sing 437 n n C32 H322 PCW sing 438 n n C33 C34 PCW sing 439 n n C33 H331 PCW sing 440 n n C33 H332 PCW sing 441 n n C34 C35 PCW sing 442 n n C34 H341 PCW sing 443 n n C34 H342 PCW sing 444 n n C35 C36 PCW sing 445 n n C35 H351 PCW sing 446 n n C35 H352 PCW sing 447 n n C36 C37 PCW sing 448 n n C36 H361 PCW sing 449 n n C36 H362 PCW sing 450 n n C37 C38 PCW sing 451 n n C37 H371 PCW sing 452 n n C37 H372 PCW sing 453 n n C38 C39 PCW sing 454 n n C38 H381 PCW sing 455 n n C38 H382 PCW sing 456 n n C39 C40 PCW doub 457 z n C39 H39 PCW sing 458 n n C40 C41 PCW sing 459 n n C40 H40 PCW sing 460 n n C41 C42 PCW sing 461 n n C41 H411 PCW sing 462 n n C41 H412 PCW sing 463 n n C42 C43 PCW sing 464 n n C42 H421 PCW sing 465 n n C42 H422 PCW sing 466 n n C43 C44 PCW sing 467 n n C43 H431 PCW sing 468 n n C43 H432 PCW sing 469 n n C44 C45 PCW sing 470 n n C44 H441 PCW sing 471 n n C44 H442 PCW sing 472 n n C45 C46 PCW sing 473 n n C45 H451 PCW sing 474 n n C45 H452 PCW sing 475 n n C46 C47 PCW sing 476 n n C46 H461 PCW sing 477 n n C46 H462 PCW sing 478 n n C47 C48 PCW sing 479 n n C47 H471 PCW sing 480 n n C47 H472 PCW sing 481 n n C48 H481 PCW sing 482 n n C48 H482 PCW sing 483 n n C48 H483 PCW sing 484 n n O1P P PCW sing 485 n n O1P H1P PCW sing 486 n n O2P P PCW doub 487 n n O3P P PCW sing 488 n n O4P P PCW sing 489 n n # _atom_sites.entry_id 5NCQ _atom_sites.fract_transf_matrix[1][1] 0.007961 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004452 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 128 A 1 1001 1001 128 128 . C 3 K A 1 1002 1002 K K . D 4 PCW A 1 1003 1005 PCW PCW . E 4 PCW A 1 1004 1006 PCW PCW . F 5 8T8 A 1 1005 1007 8T8 8T8 . G 6 HOH A 1 1101 1004 HOH HOH . G 6 HOH A 2 1102 1003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . E 4 8.122 -16.568 0.724 1 94.86 ? C1 PCW 1004 A 1 HETATM 2 C C2 PCW . . . E 4 6.995 -15.587 0.606 1 82.29 ? C2 PCW 1004 A 1 HETATM 3 C C3 PCW . . . E 4 6.363 -15.294 1.934 1 81.51 ? C3 PCW 1004 A 1 HETATM 4 C C4 PCW . . . E 4 9.335 -20.267 -0.167 1 82.57 ? C4 PCW 1004 A 1 HETATM 5 C C5 PCW . . . E 4 10.405 -19.566 -1.03 1 82.13 ? C5 PCW 1004 A 1 HETATM 6 C C6 PCW . . . E 4 11.748 -21.653 -0.698 1 82.93 ? C6 PCW 1004 A 1 HETATM 7 C C7 PCW . . . E 4 12.532 -19.88 -2.054 1 72.37 ? C7 PCW 1004 A 1 HETATM 8 C C8 PCW . . . E 4 12.398 -19.537 0.281 1 70.42 ? C8 PCW 1004 A 1 HETATM 9 C C11 PCW . . . E 4 6.818 -13.122 2.829 1 84.66 ? C11 PCW 1004 A 1 HETATM 10 C C12 PCW . . . E 4 5.749 -12.892 3.912 1 89.54 ? C12 PCW 1004 A 1 HETATM 11 C C13 PCW . . . E 4 4.742 -11.712 3.65 1 92.05 ? C13 PCW 1004 A 1 HETATM 12 C C14 PCW . . . E 4 4.658 -10.551 4.692 1 85.47 ? C14 PCW 1004 A 1 HETATM 13 C C15 PCW . . . E 4 3.819 -9.29 4.259 1 84.52 ? C15 PCW 1004 A 1 HETATM 14 C C16 PCW . . . E 4 3.387 -8.257 5.357 1 90.11 ? C16 PCW 1004 A 1 HETATM 15 C C17 PCW . . . E 4 3.341 -6.74 4.928 1 96.72 ? C17 PCW 1004 A 1 HETATM 16 C C18 PCW . . . E 4 4.704 -6.08 4.473 1 95.79 ? C18 PCW 1004 A 1 HETATM 17 C C19 PCW . . . E 4 4.841 -5.455 3.081 1 93.91 ? C19 PCW 1004 A 1 HETATM 18 C C20 PCW . . . E 4 5.961 -5.456 2.309 1 89.52 ? C20 PCW 1004 A 1 HETATM 19 C C21 PCW . . . E 4 7.358 -5.938 2.709 1 86.86 ? C21 PCW 1004 A 1 HETATM 20 C C22 PCW . . . E 4 7.877 -7.143 1.82 1 89.18 ? C22 PCW 1004 A 1 HETATM 21 C C31 PCW . . . E 4 7.193 -13.885 -1.02 1 87.47 ? C31 PCW 1004 A 1 HETATM 22 C C32 PCW . . . E 4 7.599 -12.404 -1.267 1 84.27 ? C32 PCW 1004 A 1 HETATM 23 C C33 PCW . . . E 4 7.285 -11.786 -2.656 1 87.88 ? C33 PCW 1004 A 1 HETATM 24 C C34 PCW . . . E 4 7.21 -10.234 -2.79 1 88.34 ? C34 PCW 1004 A 1 HETATM 25 C C35 PCW . . . E 4 6.638 -9.694 -4.147 1 84.78 ? C35 PCW 1004 A 1 HETATM 26 C C36 PCW . . . E 4 6.59 -8.16 -4.368 1 85.78 ? C36 PCW 1004 A 1 HETATM 27 C C37 PCW . . . E 4 5.684 -7.634 -5.527 1 85.58 ? C37 PCW 1004 A 1 HETATM 28 C C38 PCW . . . E 4 5.137 -6.168 -5.481 1 89.63 ? C38 PCW 1004 A 1 HETATM 29 C C39 PCW . . . E 4 3.91 -5.827 -6.296 1 89.56 ? C39 PCW 1004 A 1 HETATM 30 C C40 PCW . . . E 4 2.815 -5.154 -5.863 1 89.98 ? C40 PCW 1004 A 1 HETATM 31 C C41 PCW . . . E 4 2.495 -4.843 -4.416 1 97.73 ? C41 PCW 1004 A 1 HETATM 32 C C42 PCW . . . E 4 3.319 -3.771 -3.65 1 103.47 ? C42 PCW 1004 A 1 HETATM 33 C C43 PCW . . . E 4 2.717 -3.137 -2.371 1 104.15 ? C43 PCW 1004 A 1 HETATM 34 C C44 PCW . . . E 4 2.962 -3.845 -1.011 1 105.71 ? C44 PCW 1004 A 1 HETATM 35 C C45 PCW . . . E 4 1.728 -3.89 -0.064 1 103.18 ? C45 PCW 1004 A 1 HETATM 36 C C46 PCW . . . E 4 1.993 -4.482 1.348 1 97.05 ? C46 PCW 1004 A 1 HETATM 37 C C47 PCW . . . E 4 0.741 -4.912 2.143 1 85.7 ? C47 PCW 1004 A 1 HETATM 38 C C48 PCW . . . E 4 -0.153 -3.764 2.618 1 76.29 ? C48 PCW 1004 A 1 HETATM 39 N N PCW . . . E 4 11.741 -20.189 -0.852 1 74.55 ? N PCW 1004 A 1 HETATM 40 O O2 PCW . . . E 4 7.672 -14.376 0.154 1 84.6 ? O2 PCW 1004 A 1 HETATM 41 O O3 PCW . . . E 4 7.24 -14.419 2.672 1 79.76 ? O3 PCW 1004 A 1 HETATM 42 O O11 PCW . . . E 4 7.025 -12.293 1.966 1 86.87 ? O11 PCW 1004 A 1 HETATM 43 O O31 PCW . . . E 4 6.559 -14.558 -1.813 1 93.16 ? O31 PCW 1004 A 1 HETATM 44 O O1P PCW . . . E 4 7.61 -19.67 2.703 1 77.16 ? O1P PCW 1004 A 1 HETATM 45 O O2P PCW . . . E 4 9.911 -18.82 2.136 1 83.98 ? O2P PCW 1004 A 1 HETATM 46 O O3P PCW . . . E 4 7.898 -17.383 1.815 1 97.33 ? O3P PCW 1004 A 1 HETATM 47 O O4P PCW . . . E 4 8.345 -19.413 0.294 1 77.72 ? O4P PCW 1004 A 1 HETATM 48 P P PCW . . . E 4 8.465 -18.867 1.784 1 80.72 ? P PCW 1004 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #