data_5ND3
#
_model_server_result.job_id            qDui8IrqC7_BDE4PbzGa9A 
_model_server_result.datetime_utc      '2025-07-02 18:53:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nd3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":601}' 
#
_entry.id    5ND3 
#
_exptl.entry_id    5ND3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              853.906 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TAXOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B ND2 ASN 101 A ASN 101 1_555 D O3G GTP . A GTP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.219 ? 
metalc ? metalc1 D O2G GTP . A GTP 500 1_555 E MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
#
_chem_comp.formula           'C47 H51 N O14' 
_chem_comp.formula_weight    853.906 
_chem_comp.id                TA1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TAXOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C01 TA1 sing 383 n n 
O01 H011 TA1 sing 384 n n 
C01 C02 TA1 sing 385 n n 
C01 C43 TA1 sing 386 n n 
C01 C45 TA1 sing 387 n n 
C02 O02 TA1 sing 388 n n 
C02 C10 TA1 sing 389 n n 
C02 H021 TA1 sing 390 n n 
O02 C03 TA1 sing 391 n n 
C03 O03 TA1 doub 392 n n 
C03 C04 TA1 sing 393 n n 
C04 C05 TA1 doub 394 n y 
C04 C09 TA1 sing 395 n y 
C05 C06 TA1 sing 396 n y 
C05 H051 TA1 sing 397 n n 
C06 C07 TA1 doub 398 n y 
C06 H061 TA1 sing 399 n n 
C07 C08 TA1 sing 400 n y 
C07 HC71 TA1 sing 401 n n 
C08 C09 TA1 doub 402 n y 
C08 H081 TA1 sing 403 n n 
C09 H091 TA1 sing 404 n n 
C10 C11 TA1 sing 405 n n 
C10 C18 TA1 sing 406 n n 
C10 H101 TA1 sing 407 n n 
C11 O04 TA1 sing 408 n n 
C11 C14 TA1 sing 409 n n 
C11 C15 TA1 sing 410 n n 
O04 C12 TA1 sing 411 n n 
C12 O05 TA1 doub 412 n n 
C12 C13 TA1 sing 413 n n 
C13 H131 TA1 sing 414 n n 
C13 H132 TA1 sing 415 n n 
C13 H133 TA1 sing 416 n n 
C14 O06 TA1 sing 417 n n 
C14 H141 TA1 sing 418 n n 
C14 H142 TA1 sing 419 n n 
O06 C15 TA1 sing 420 n n 
C15 C16 TA1 sing 421 n n 
C15 H151 TA1 sing 422 n n 
C16 C17 TA1 sing 423 n n 
C16 H161 TA1 sing 424 n n 
C16 H162 TA1 sing 425 n n 
C17 O07 TA1 sing 426 n n 
C17 C18 TA1 sing 427 n n 
C17 H171 TA1 sing 428 n n 
O07 H071 TA1 sing 429 n n 
C18 C19 TA1 sing 430 n n 
C18 C20 TA1 sing 431 n n 
C19 H191 TA1 sing 432 n n 
C19 H192 TA1 sing 433 n n 
C19 H193 TA1 sing 434 n n 
C20 O08 TA1 doub 435 n n 
C20 C21 TA1 sing 436 n n 
C21 O09 TA1 sing 437 n n 
C21 C24 TA1 sing 438 n n 
C21 H211 TA1 sing 439 n n 
O09 C22 TA1 sing 440 n n 
C22 O10 TA1 doub 441 n n 
C22 C23 TA1 sing 442 n n 
C23 H231 TA1 sing 443 n n 
C23 H232 TA1 sing 444 n n 
C23 H233 TA1 sing 445 n n 
C24 C25 TA1 doub 446 n n 
C24 C45 TA1 sing 447 n n 
C25 C26 TA1 sing 448 n n 
C25 C44 TA1 sing 449 n n 
C26 O11 TA1 sing 450 n n 
C26 C43 TA1 sing 451 n n 
C26 H261 TA1 sing 452 n n 
O11 C27 TA1 sing 453 n n 
C27 O12 TA1 doub 454 n n 
C27 C28 TA1 sing 455 n n 
C28 O13 TA1 sing 456 n n 
C28 C29 TA1 sing 457 n n 
C28 H281 TA1 sing 458 n n 
O13 HO11 TA1 sing 459 n n 
C29 N01 TA1 sing 460 n n 
C29 C37 TA1 sing 461 n n 
C29 H291 TA1 sing 462 n n 
N01 C30 TA1 sing 463 n n 
N01 HN01 TA1 sing 464 n n 
C30 O14 TA1 doub 465 n n 
C30 C31 TA1 sing 466 n n 
C31 C32 TA1 doub 467 n y 
C31 C36 TA1 sing 468 n y 
C32 C33 TA1 sing 469 n y 
C32 H321 TA1 sing 470 n n 
C33 C34 TA1 doub 471 n y 
C33 H331 TA1 sing 472 n n 
C34 C35 TA1 sing 473 n y 
C34 H341 TA1 sing 474 n n 
C35 C36 TA1 doub 475 n y 
C35 H351 TA1 sing 476 n n 
C36 H361 TA1 sing 477 n n 
C37 C38 TA1 doub 478 n y 
C37 C42 TA1 sing 479 n y 
C38 C39 TA1 sing 480 n y 
C38 H381 TA1 sing 481 n n 
C39 C40 TA1 doub 482 n y 
C39 H391 TA1 sing 483 n n 
C40 C41 TA1 sing 484 n y 
C40 H401 TA1 sing 485 n n 
C41 C42 TA1 doub 486 n y 
C41 H411 TA1 sing 487 n n 
C42 H421 TA1 sing 488 n n 
C43 H431 TA1 sing 489 n n 
C43 H432 TA1 sing 490 n n 
C44 H441 TA1 sing 491 n n 
C44 H442 TA1 sing 492 n n 
C44 H443 TA1 sing 493 n n 
C45 C46 TA1 sing 494 n n 
C45 C47 TA1 sing 495 n n 
C46 H461 TA1 sing 496 n n 
C46 H462 TA1 sing 497 n n 
C46 H463 TA1 sing 498 n n 
C47 H471 TA1 sing 499 n n 
C47 H472 TA1 sing 500 n n 
C47 H473 TA1 sing 501 n n 
#
_atom_sites.entry_id                     5ND3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GTP A 1 500 500 GTP GTP . 
E 5 MG A 1 501 501 MG MG . 
F 6 GDP B 1 600 600 GDP GDP . 
G 7 TA1 B 1 601 601 TA1 TA1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 TA1 . . . G 7 245.824 224.205 332.602 1 63.75 ? O01 TA1 601 B 1 
HETATM 2 C C01 TA1 . . . G 7 245.985 223.855 331.213 1 63.37 ? C01 TA1 601 B 1 
HETATM 3 C C02 TA1 . . . G 7 246.289 222.255 331.183 1 64.56 ? C02 TA1 601 B 1 
HETATM 4 O O02 TA1 . . . G 7 245.073 221.701 331.82 1 73.61 ? O02 TA1 601 B 1 
HETATM 5 C C03 TA1 . . . G 7 245.181 221.171 333.128 1 82.3 ? C03 TA1 601 B 1 
HETATM 6 O O03 TA1 . . . G 7 246.218 221.112 333.742 1 81.04 ? O03 TA1 601 B 1 
HETATM 7 C C04 TA1 . . . G 7 243.925 220.682 333.635 1 85.16 ? C04 TA1 601 B 1 
HETATM 8 C C05 TA1 . . . G 7 243.68 221.151 334.999 1 85.81 ? C05 TA1 601 B 1 
HETATM 9 C C06 TA1 . . . G 7 242.393 220.678 335.598 1 88.17 ? C06 TA1 601 B 1 
HETATM 10 C C07 TA1 . . . G 7 241.501 219.837 334.876 1 88.93 ? C07 TA1 601 B 1 
HETATM 11 C C08 TA1 . . . G 7 241.816 219.5 333.709 1 87.81 ? C08 TA1 601 B 1 
HETATM 12 C C09 TA1 . . . G 7 242.99 219.858 332.996 1 86.96 ? C09 TA1 601 B 1 
HETATM 13 C C10 TA1 . . . G 7 246.472 221.517 329.749 1 60.76 ? C10 TA1 601 B 1 
HETATM 14 C C11 TA1 . . . G 7 245.684 220.117 329.615 1 59.46 ? C11 TA1 601 B 1 
HETATM 15 O O04 TA1 . . . G 7 244.209 220.289 329.713 1 58.42 ? O04 TA1 601 B 1 
HETATM 16 C C12 TA1 . . . G 7 243.481 220.936 328.741 1 58.87 ? C12 TA1 601 B 1 
HETATM 17 O O05 TA1 . . . G 7 243.931 221.421 327.746 1 60.49 ? O05 TA1 601 B 1 
HETATM 18 C C13 TA1 . . . G 7 242.018 220.93 329.128 1 55.92 ? C13 TA1 601 B 1 
HETATM 19 C C14 TA1 . . . G 7 245.939 218.984 330.644 1 60.18 ? C14 TA1 601 B 1 
HETATM 20 O O06 TA1 . . . G 7 246.335 218.041 329.621 1 59.01 ? O06 TA1 601 B 1 
HETATM 21 C C15 TA1 . . . G 7 246.118 219.03 328.592 1 59.51 ? C15 TA1 601 B 1 
HETATM 22 C C16 TA1 . . . G 7 247.406 219.284 327.74 1 60.03 ? C16 TA1 601 B 1 
HETATM 23 C C17 TA1 . . . G 7 247.894 220.726 327.77 1 61.43 ? C17 TA1 601 B 1 
HETATM 24 O O07 TA1 . . . G 7 249.111 220.836 326.987 1 62.13 ? O07 TA1 601 B 1 
HETATM 25 C C18 TA1 . . . G 7 248.069 221.307 329.254 1 62.13 ? C18 TA1 601 B 1 
HETATM 26 C C19 TA1 . . . G 7 248.871 220.284 330.114 1 63.64 ? C19 TA1 601 B 1 
HETATM 27 C C20 TA1 . . . G 7 249.041 222.604 329.227 1 65.31 ? C20 TA1 601 B 1 
HETATM 28 O O08 TA1 . . . G 7 250.12 222.545 329.793 1 68.11 ? O08 TA1 601 B 1 
HETATM 29 C C21 TA1 . . . G 7 248.643 223.912 328.529 1 63.59 ? C21 TA1 601 B 1 
HETATM 30 O O09 TA1 . . . G 7 249.755 224.887 328.723 1 58.93 ? O09 TA1 601 B 1 
HETATM 31 C C22 TA1 . . . G 7 250.514 225.296 327.645 1 56.05 ? C22 TA1 601 B 1 
HETATM 32 O O10 TA1 . . . G 7 250.361 224.934 326.519 1 57.49 ? O10 TA1 601 B 1 
HETATM 33 C C23 TA1 . . . G 7 251.573 226.267 328.087 1 54.68 ? C23 TA1 601 B 1 
HETATM 34 C C24 TA1 . . . G 7 247.324 224.44 329.097 1 63.31 ? C24 TA1 601 B 1 
HETATM 35 C C25 TA1 . . . G 7 246.206 224.517 328.273 1 62.6 ? C25 TA1 601 B 1 
HETATM 36 C C26 TA1 . . . G 7 244.865 224.909 328.965 1 60.57 ? C26 TA1 601 B 1 
HETATM 37 O O11 TA1 . . . G 7 243.666 224.626 328.162 1 60.54 ? O11 TA1 601 B 1 
HETATM 38 C C27 TA1 . . . G 7 243.184 225.603 327.406 1 60.84 ? C27 TA1 601 B 1 
HETATM 39 O O12 TA1 . . . G 7 243.614 226.709 327.285 1 60.71 ? O12 TA1 601 B 1 
HETATM 40 C C28 TA1 . . . G 7 241.908 225.125 326.664 1 63.49 ? C28 TA1 601 B 1 
HETATM 41 O O13 TA1 . . . G 7 241.41 226.212 325.908 1 63.94 ? O13 TA1 601 B 1 
HETATM 42 C C29 TA1 . . . G 7 240.896 224.612 327.718 1 64.93 ? C29 TA1 601 B 1 
HETATM 43 N N01 TA1 . . . G 7 240.743 225.671 328.711 1 68.46 ? N01 TA1 601 B 1 
HETATM 44 C C30 TA1 . . . G 7 240.387 225.432 329.995 1 75.26 ? C30 TA1 601 B 1 
HETATM 45 O O14 TA1 . . . G 7 240.146 224.31 330.428 1 72.57 ? O14 TA1 601 B 1 
HETATM 46 C C31 TA1 . . . G 7 240.341 226.652 330.848 1 80.56 ? C31 TA1 601 B 1 
HETATM 47 C C32 TA1 . . . G 7 239.501 227.737 330.606 1 83.75 ? C32 TA1 601 B 1 
HETATM 48 C C33 TA1 . . . G 7 239.514 228.878 331.454 1 86.03 ? C33 TA1 601 B 1 
HETATM 49 C C34 TA1 . . . G 7 240.401 228.915 332.564 1 87.21 ? C34 TA1 601 B 1 
HETATM 50 C C35 TA1 . . . G 7 241.241 227.842 332.811 1 85.33 ? C35 TA1 601 B 1 
HETATM 51 C C36 TA1 . . . G 7 241.234 226.715 331.983 1 84.57 ? C36 TA1 601 B 1 
HETATM 52 C C37 TA1 . . . G 7 239.575 224.164 327.059 1 65.34 ? C37 TA1 601 B 1 
HETATM 53 C C38 TA1 . . . G 7 239.445 222.813 326.696 1 66.62 ? C38 TA1 601 B 1 
HETATM 54 C C39 TA1 . . . G 7 238.257 222.337 326.08 1 67.56 ? C39 TA1 601 B 1 
HETATM 55 C C40 TA1 . . . G 7 237.197 223.228 325.833 1 66.79 ? C40 TA1 601 B 1 
HETATM 56 C C41 TA1 . . . G 7 237.319 224.558 326.192 1 68.49 ? C41 TA1 601 B 1 
HETATM 57 C C42 TA1 . . . G 7 238.507 225.042 326.808 1 66.75 ? C42 TA1 601 B 1 
HETATM 58 C C43 TA1 . . . G 7 244.677 224.14 330.329 1 61.38 ? C43 TA1 601 B 1 
HETATM 59 C C44 TA1 . . . G 7 246.152 224.165 326.79 1 62.81 ? C44 TA1 601 B 1 
HETATM 60 C C45 TA1 . . . G 7 247.214 224.817 330.655 1 63.04 ? C45 TA1 601 B 1 
HETATM 61 C C46 TA1 . . . G 7 246.894 226.375 330.786 1 62.66 ? C46 TA1 601 B 1 
HETATM 62 C C47 TA1 . . . G 7 248.467 224.656 331.546 1 61.96 ? C47 TA1 601 B 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    95 
_model_server_stats.query_time_ms           1755 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           62 
#