data_5ND4
#
_model_server_result.job_id            SZQJ8btNfy5A4dG_ey6EUw 
_model_server_result.datetime_utc      '2024-11-04 23:19:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nd4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":601}' 
#
_entry.id    5ND4 
#
_exptl.entry_id    5ND4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              853.906 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TAXOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      9 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 357 C SER 377 1_555 E MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc2 D O2B ADP . C ADP 601 1_555 E MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc3 G O2G GTP . A GTP 500 1_555 H MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
#
_chem_comp.formula           'C47 H51 N O14' 
_chem_comp.formula_weight    853.906 
_chem_comp.id                TA1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TAXOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C01 TA1 sing 431 n n 
O01 H011 TA1 sing 432 n n 
C01 C02 TA1 sing 433 n n 
C01 C43 TA1 sing 434 n n 
C01 C45 TA1 sing 435 n n 
C02 O02 TA1 sing 436 n n 
C02 C10 TA1 sing 437 n n 
C02 H021 TA1 sing 438 n n 
O02 C03 TA1 sing 439 n n 
C03 O03 TA1 doub 440 n n 
C03 C04 TA1 sing 441 n n 
C04 C05 TA1 doub 442 n y 
C04 C09 TA1 sing 443 n y 
C05 C06 TA1 sing 444 n y 
C05 H051 TA1 sing 445 n n 
C06 C07 TA1 doub 446 n y 
C06 H061 TA1 sing 447 n n 
C07 C08 TA1 sing 448 n y 
C07 HC71 TA1 sing 449 n n 
C08 C09 TA1 doub 450 n y 
C08 H081 TA1 sing 451 n n 
C09 H091 TA1 sing 452 n n 
C10 C11 TA1 sing 453 n n 
C10 C18 TA1 sing 454 n n 
C10 H101 TA1 sing 455 n n 
C11 O04 TA1 sing 456 n n 
C11 C14 TA1 sing 457 n n 
C11 C15 TA1 sing 458 n n 
O04 C12 TA1 sing 459 n n 
C12 O05 TA1 doub 460 n n 
C12 C13 TA1 sing 461 n n 
C13 H131 TA1 sing 462 n n 
C13 H132 TA1 sing 463 n n 
C13 H133 TA1 sing 464 n n 
C14 O06 TA1 sing 465 n n 
C14 H141 TA1 sing 466 n n 
C14 H142 TA1 sing 467 n n 
O06 C15 TA1 sing 468 n n 
C15 C16 TA1 sing 469 n n 
C15 H151 TA1 sing 470 n n 
C16 C17 TA1 sing 471 n n 
C16 H161 TA1 sing 472 n n 
C16 H162 TA1 sing 473 n n 
C17 O07 TA1 sing 474 n n 
C17 C18 TA1 sing 475 n n 
C17 H171 TA1 sing 476 n n 
O07 H071 TA1 sing 477 n n 
C18 C19 TA1 sing 478 n n 
C18 C20 TA1 sing 479 n n 
C19 H191 TA1 sing 480 n n 
C19 H192 TA1 sing 481 n n 
C19 H193 TA1 sing 482 n n 
C20 O08 TA1 doub 483 n n 
C20 C21 TA1 sing 484 n n 
C21 O09 TA1 sing 485 n n 
C21 C24 TA1 sing 486 n n 
C21 H211 TA1 sing 487 n n 
O09 C22 TA1 sing 488 n n 
C22 O10 TA1 doub 489 n n 
C22 C23 TA1 sing 490 n n 
C23 H231 TA1 sing 491 n n 
C23 H232 TA1 sing 492 n n 
C23 H233 TA1 sing 493 n n 
C24 C25 TA1 doub 494 n n 
C24 C45 TA1 sing 495 n n 
C25 C26 TA1 sing 496 n n 
C25 C44 TA1 sing 497 n n 
C26 O11 TA1 sing 498 n n 
C26 C43 TA1 sing 499 n n 
C26 H261 TA1 sing 500 n n 
O11 C27 TA1 sing 501 n n 
C27 O12 TA1 doub 502 n n 
C27 C28 TA1 sing 503 n n 
C28 O13 TA1 sing 504 n n 
C28 C29 TA1 sing 505 n n 
C28 H281 TA1 sing 506 n n 
O13 HO11 TA1 sing 507 n n 
C29 N01 TA1 sing 508 n n 
C29 C37 TA1 sing 509 n n 
C29 H291 TA1 sing 510 n n 
N01 C30 TA1 sing 511 n n 
N01 HN01 TA1 sing 512 n n 
C30 O14 TA1 doub 513 n n 
C30 C31 TA1 sing 514 n n 
C31 C32 TA1 doub 515 n y 
C31 C36 TA1 sing 516 n y 
C32 C33 TA1 sing 517 n y 
C32 H321 TA1 sing 518 n n 
C33 C34 TA1 doub 519 n y 
C33 H331 TA1 sing 520 n n 
C34 C35 TA1 sing 521 n y 
C34 H341 TA1 sing 522 n n 
C35 C36 TA1 doub 523 n y 
C35 H351 TA1 sing 524 n n 
C36 H361 TA1 sing 525 n n 
C37 C38 TA1 doub 526 n y 
C37 C42 TA1 sing 527 n y 
C38 C39 TA1 sing 528 n y 
C38 H381 TA1 sing 529 n n 
C39 C40 TA1 doub 530 n y 
C39 H391 TA1 sing 531 n n 
C40 C41 TA1 sing 532 n y 
C40 H401 TA1 sing 533 n n 
C41 C42 TA1 doub 534 n y 
C41 H411 TA1 sing 535 n n 
C42 H421 TA1 sing 536 n n 
C43 H431 TA1 sing 537 n n 
C43 H432 TA1 sing 538 n n 
C44 H441 TA1 sing 539 n n 
C44 H442 TA1 sing 540 n n 
C44 H443 TA1 sing 541 n n 
C45 C46 TA1 sing 542 n n 
C45 C47 TA1 sing 543 n n 
C46 H461 TA1 sing 544 n n 
C46 H462 TA1 sing 545 n n 
C46 H463 TA1 sing 546 n n 
C47 H471 TA1 sing 547 n n 
C47 H472 TA1 sing 548 n n 
C47 H473 TA1 sing 549 n n 
#
_atom_sites.entry_id                     5ND4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ADP C 1 601 511 ADP ADP . 
E 5 MG C 1 602 512 MG MG . 
F 6 ALF C 1 603 513 ALF ALF . 
G 7 GTP A 1 500 500 GTP GTP . 
H 5 MG A 1 501 501 MG MG . 
I 8 GDP B 1 600 600 GDP GDP . 
J 9 TA1 B 1 601 601 TA1 TA1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 TA1 . . . J 9 246.009 224.12 332.296 1 0 ? O01 TA1 601 B 1 
HETATM 2 C C01 TA1 . . . J 9 246.154 223.794 330.9 1 0 ? C01 TA1 601 B 1 
HETATM 3 C C02 TA1 . . . J 9 246.459 222.194 330.838 1 0 ? C02 TA1 601 B 1 
HETATM 4 O O02 TA1 . . . J 9 245.249 221.629 331.479 1 0 ? O02 TA1 601 B 1 
HETATM 5 C C03 TA1 . . . J 9 245.371 221.077 332.775 1 0 ? C03 TA1 601 B 1 
HETATM 6 O O03 TA1 . . . J 9 246.415 221.007 333.378 1 0 ? O03 TA1 601 B 1 
HETATM 7 C C04 TA1 . . . J 9 244.122 220.578 333.288 1 0 ? C04 TA1 601 B 1 
HETATM 8 C C05 TA1 . . . J 9 243.89 221.022 334.662 1 0 ? C05 TA1 601 B 1 
HETATM 9 C C06 TA1 . . . J 9 242.611 220.538 335.267 1 0 ? C06 TA1 601 B 1 
HETATM 10 C C07 TA1 . . . J 9 241.711 219.71 334.538 1 0 ? C07 TA1 601 B 1 
HETATM 11 C C08 TA1 . . . J 9 242.012 219.393 333.363 1 0 ? C08 TA1 601 B 1 
HETATM 12 C C09 TA1 . . . J 9 243.181 219.765 332.643 1 0 ? C09 TA1 601 B 1 
HETATM 13 C C10 TA1 . . . J 9 246.626 221.482 329.39 1 0 ? C10 TA1 601 B 1 
HETATM 14 C C11 TA1 . . . J 9 245.836 220.085 329.24 1 0 ? C11 TA1 601 B 1 
HETATM 15 O O04 TA1 . . . J 9 244.364 220.254 329.356 1 0 ? O04 TA1 601 B 1 
HETATM 16 C C12 TA1 . . . J 9 243.625 220.918 328.404 1 0 ? C12 TA1 601 B 1 
HETATM 17 O O05 TA1 . . . J 9 244.064 221.421 327.413 1 0 ? O05 TA1 601 B 1 
HETATM 18 C C13 TA1 . . . J 9 242.166 220.904 328.806 1 0 ? C13 TA1 601 B 1 
HETATM 19 C C14 TA1 . . . J 9 246.104 218.934 330.246 1 0 ? C14 TA1 601 B 1 
HETATM 20 O O06 TA1 . . . J 9 246.488 218.009 329.202 1 0 ? O06 TA1 601 B 1 
HETATM 21 C C15 TA1 . . . J 9 246.261 219.016 328.193 1 0 ? C15 TA1 601 B 1 
HETATM 22 C C16 TA1 . . . J 9 247.539 219.285 327.331 1 0 ? C16 TA1 601 B 1 
HETATM 23 C C17 TA1 . . . J 9 248.027 220.727 327.382 1 0 ? C17 TA1 601 B 1 
HETATM 24 O O07 TA1 . . . J 9 249.237 220.851 326.588 1 0 ? O07 TA1 601 B 1 
HETATM 25 C C18 TA1 . . . J 9 248.218 221.282 328.875 1 0 ? C18 TA1 601 B 1 
HETATM 26 C C19 TA1 . . . J 9 249.029 220.243 329.707 1 0 ? C19 TA1 601 B 1 
HETATM 27 C C20 TA1 . . . J 9 249.19 222.58 328.859 1 0 ? C20 TA1 601 B 1 
HETATM 28 O O08 TA1 . . . J 9 250.275 222.51 329.413 1 0 ? O08 TA1 601 B 1 
HETATM 29 C C21 TA1 . . . J 9 248.784 223.899 328.189 1 0 ? C21 TA1 601 B 1 
HETATM 30 O O09 TA1 . . . J 9 249.899 224.87 328.389 1 0 ? O09 TA1 601 B 1 
HETATM 31 C C22 TA1 . . . J 9 250.645 225.298 327.31 1 0 ? C22 TA1 601 B 1 
HETATM 32 O O10 TA1 . . . J 9 250.481 224.957 326.18 1 0 ? O10 TA1 601 B 1 
HETATM 33 C C23 TA1 . . . J 9 251.71 226.262 327.758 1 0 ? C23 TA1 601 B 1 
HETATM 34 C C24 TA1 . . . J 9 247.471 224.416 328.78 1 0 ? C24 TA1 601 B 1 
HETATM 35 C C25 TA1 . . . J 9 246.344 224.508 327.969 1 0 ? C25 TA1 601 B 1 
HETATM 36 C C26 TA1 . . . J 9 245.01 224.887 328.684 1 0 ? C26 TA1 601 B 1 
HETATM 37 O O11 TA1 . . . J 9 243.804 224.619 327.888 1 0 ? O11 TA1 601 B 1 
HETATM 38 C C27 TA1 . . . J 9 243.313 225.608 327.154 1 0 ? C27 TA1 601 B 1 
HETATM 39 O O12 TA1 . . . J 9 243.742 226.716 327.047 1 0 ? O12 TA1 601 B 1 
HETATM 40 C C28 TA1 . . . J 9 242.03 225.143 326.417 1 0 ? C28 TA1 601 B 1 
HETATM 41 O O13 TA1 . . . J 9 241.523 226.243 325.686 1 0 ? O13 TA1 601 B 1 
HETATM 42 C C29 TA1 . . . J 9 241.029 224.611 327.474 1 0 ? C29 TA1 601 B 1 
HETATM 43 N N01 TA1 . . . J 9 240.886 225.651 328.486 1 0 ? N01 TA1 601 B 1 
HETATM 44 C C30 TA1 . . . J 9 240.543 225.39 329.77 1 0 ? C30 TA1 601 B 1 
HETATM 45 O O14 TA1 . . . J 9 240.308 224.261 330.186 1 0 ? O14 TA1 601 B 1 
HETATM 46 C C31 TA1 . . . J 9 240.507 226.595 330.644 1 0 ? C31 TA1 601 B 1 
HETATM 47 C C32 TA1 . . . J 9 239.664 227.684 330.43 1 0 ? C32 TA1 601 B 1 
HETATM 48 C C33 TA1 . . . J 9 239.685 228.81 331.298 1 0 ? C33 TA1 601 B 1 
HETATM 49 C C34 TA1 . . . J 9 240.584 228.828 332.4 1 0 ? C34 TA1 601 B 1 
HETATM 50 C C35 TA1 . . . J 9 241.426 227.751 332.618 1 0 ? C35 TA1 601 B 1 
HETATM 51 C C36 TA1 . . . J 9 241.413 226.639 331.771 1 0 ? C36 TA1 601 B 1 
HETATM 52 C C37 TA1 . . . J 9 239.7 224.174 326.821 1 0 ? C37 TA1 601 B 1 
HETATM 53 C C38 TA1 . . . J 9 239.567 222.83 326.435 1 0 ? C38 TA1 601 B 1 
HETATM 54 C C39 TA1 . . . J 9 238.374 222.365 325.823 1 0 ? C39 TA1 601 B 1 
HETATM 55 C C40 TA1 . . . J 9 237.31 223.259 325.603 1 0 ? C40 TA1 601 B 1 
HETATM 56 C C41 TA1 . . . J 9 237.436 224.583 325.983 1 0 ? C41 TA1 601 B 1 
HETATM 57 C C42 TA1 . . . J 9 238.63 225.056 326.597 1 0 ? C42 TA1 601 B 1 
HETATM 58 C C43 TA1 . . . J 9 244.837 224.094 330.035 1 0 ? C43 TA1 601 B 1 
HETATM 59 C C44 TA1 . . . J 9 246.274 224.182 326.481 1 0 ? C44 TA1 601 B 1 
HETATM 60 C C45 TA1 . . . J 9 247.378 224.767 330.346 1 0 ? C45 TA1 601 B 1 
HETATM 61 C C46 TA1 . . . J 9 247.059 226.322 330.507 1 0 ? C46 TA1 601 B 1 
HETATM 62 C C47 TA1 . . . J 9 248.64 224.59 331.221 1 0 ? C47 TA1 601 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           62 
#