data_5ND7
#
_model_server_result.job_id            HcnR-EGw4kQnFRLifYX5tQ 
_model_server_result.datetime_utc      '2025-04-16 20:21:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5nd7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":601}' 
#
_entry.id    5ND7 
#
_exptl.entry_id    5ND7 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              853.906 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TAXOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B ND2 ASN 101 A ASN 101 1_555 F O3G GTP . A GTP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? 
metalc ? metalc1 D MG MG . C MG 601 1_555 E O2G ANP . C ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc2 D MG MG . C MG 601 1_555 E O2B ANP . C ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc3 B OE1 GLU 71 A GLU 71 1_555 G MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc4 F O2G GTP . A GTP 500 1_555 G MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
#
_chem_comp.formula           'C47 H51 N O14' 
_chem_comp.formula_weight    853.906 
_chem_comp.id                TA1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TAXOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C01 TA1 sing 433 n n 
O01 H011 TA1 sing 434 n n 
C01 C02 TA1 sing 435 n n 
C01 C43 TA1 sing 436 n n 
C01 C45 TA1 sing 437 n n 
C02 O02 TA1 sing 438 n n 
C02 C10 TA1 sing 439 n n 
C02 H021 TA1 sing 440 n n 
O02 C03 TA1 sing 441 n n 
C03 O03 TA1 doub 442 n n 
C03 C04 TA1 sing 443 n n 
C04 C05 TA1 doub 444 n y 
C04 C09 TA1 sing 445 n y 
C05 C06 TA1 sing 446 n y 
C05 H051 TA1 sing 447 n n 
C06 C07 TA1 doub 448 n y 
C06 H061 TA1 sing 449 n n 
C07 C08 TA1 sing 450 n y 
C07 HC71 TA1 sing 451 n n 
C08 C09 TA1 doub 452 n y 
C08 H081 TA1 sing 453 n n 
C09 H091 TA1 sing 454 n n 
C10 C11 TA1 sing 455 n n 
C10 C18 TA1 sing 456 n n 
C10 H101 TA1 sing 457 n n 
C11 O04 TA1 sing 458 n n 
C11 C14 TA1 sing 459 n n 
C11 C15 TA1 sing 460 n n 
O04 C12 TA1 sing 461 n n 
C12 O05 TA1 doub 462 n n 
C12 C13 TA1 sing 463 n n 
C13 H131 TA1 sing 464 n n 
C13 H132 TA1 sing 465 n n 
C13 H133 TA1 sing 466 n n 
C14 O06 TA1 sing 467 n n 
C14 H141 TA1 sing 468 n n 
C14 H142 TA1 sing 469 n n 
O06 C15 TA1 sing 470 n n 
C15 C16 TA1 sing 471 n n 
C15 H151 TA1 sing 472 n n 
C16 C17 TA1 sing 473 n n 
C16 H161 TA1 sing 474 n n 
C16 H162 TA1 sing 475 n n 
C17 O07 TA1 sing 476 n n 
C17 C18 TA1 sing 477 n n 
C17 H171 TA1 sing 478 n n 
O07 H071 TA1 sing 479 n n 
C18 C19 TA1 sing 480 n n 
C18 C20 TA1 sing 481 n n 
C19 H191 TA1 sing 482 n n 
C19 H192 TA1 sing 483 n n 
C19 H193 TA1 sing 484 n n 
C20 O08 TA1 doub 485 n n 
C20 C21 TA1 sing 486 n n 
C21 O09 TA1 sing 487 n n 
C21 C24 TA1 sing 488 n n 
C21 H211 TA1 sing 489 n n 
O09 C22 TA1 sing 490 n n 
C22 O10 TA1 doub 491 n n 
C22 C23 TA1 sing 492 n n 
C23 H231 TA1 sing 493 n n 
C23 H232 TA1 sing 494 n n 
C23 H233 TA1 sing 495 n n 
C24 C25 TA1 doub 496 n n 
C24 C45 TA1 sing 497 n n 
C25 C26 TA1 sing 498 n n 
C25 C44 TA1 sing 499 n n 
C26 O11 TA1 sing 500 n n 
C26 C43 TA1 sing 501 n n 
C26 H261 TA1 sing 502 n n 
O11 C27 TA1 sing 503 n n 
C27 O12 TA1 doub 504 n n 
C27 C28 TA1 sing 505 n n 
C28 O13 TA1 sing 506 n n 
C28 C29 TA1 sing 507 n n 
C28 H281 TA1 sing 508 n n 
O13 HO11 TA1 sing 509 n n 
C29 N01 TA1 sing 510 n n 
C29 C37 TA1 sing 511 n n 
C29 H291 TA1 sing 512 n n 
N01 C30 TA1 sing 513 n n 
N01 HN01 TA1 sing 514 n n 
C30 O14 TA1 doub 515 n n 
C30 C31 TA1 sing 516 n n 
C31 C32 TA1 doub 517 n y 
C31 C36 TA1 sing 518 n y 
C32 C33 TA1 sing 519 n y 
C32 H321 TA1 sing 520 n n 
C33 C34 TA1 doub 521 n y 
C33 H331 TA1 sing 522 n n 
C34 C35 TA1 sing 523 n y 
C34 H341 TA1 sing 524 n n 
C35 C36 TA1 doub 525 n y 
C35 H351 TA1 sing 526 n n 
C36 H361 TA1 sing 527 n n 
C37 C38 TA1 doub 528 n y 
C37 C42 TA1 sing 529 n y 
C38 C39 TA1 sing 530 n y 
C38 H381 TA1 sing 531 n n 
C39 C40 TA1 doub 532 n y 
C39 H391 TA1 sing 533 n n 
C40 C41 TA1 sing 534 n y 
C40 H401 TA1 sing 535 n n 
C41 C42 TA1 doub 536 n y 
C41 H411 TA1 sing 537 n n 
C42 H421 TA1 sing 538 n n 
C43 H431 TA1 sing 539 n n 
C43 H432 TA1 sing 540 n n 
C44 H441 TA1 sing 541 n n 
C44 H442 TA1 sing 542 n n 
C44 H443 TA1 sing 543 n n 
C45 C46 TA1 sing 544 n n 
C45 C47 TA1 sing 545 n n 
C46 H461 TA1 sing 546 n n 
C46 H462 TA1 sing 547 n n 
C46 H463 TA1 sing 548 n n 
C47 H471 TA1 sing 549 n n 
C47 H472 TA1 sing 550 n n 
C47 H473 TA1 sing 551 n n 
#
_atom_sites.entry_id                     5ND7 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MG C 1 601 504 MG MG . 
E 5 ANP C 1 602 505 ANP ANP . 
F 6 GTP A 1 500 500 GTP GTP . 
G 4 MG A 1 501 501 MG MG . 
H 7 GDP B 1 600 600 GDP GDP . 
I 8 TA1 B 1 601 601 TA1 TA1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 TA1 . . . I 8 244.103 221.654 334.553 1 63.75 ? O01 TA1 601 B 1 
HETATM 2 C C01 TA1 . . . I 8 244.273 221.324 333.161 1 63.37 ? C01 TA1 601 B 1 
HETATM 3 C C02 TA1 . . . I 8 244.564 219.722 333.11 1 64.56 ? C02 TA1 601 B 1 
HETATM 4 O O02 TA1 . . . I 8 243.339 219.167 333.729 1 73.61 ? O02 TA1 601 B 1 
HETATM 5 C C03 TA1 . . . I 8 243.433 218.618 335.029 1 82.3 ? C03 TA1 601 B 1 
HETATM 6 O O03 TA1 . . . I 8 244.465 218.542 335.652 1 81.04 ? O03 TA1 601 B 1 
HETATM 7 C C04 TA1 . . . I 8 242.17 218.131 335.52 1 85.16 ? C04 TA1 601 B 1 
HETATM 8 C C05 TA1 . . . I 8 241.916 218.582 336.888 1 85.81 ? C05 TA1 601 B 1 
HETATM 9 C C06 TA1 . . . I 8 240.622 218.109 337.47 1 88.17 ? C06 TA1 601 B 1 
HETATM 10 C C07 TA1 . . . I 8 239.729 217.287 336.727 1 88.93 ? C07 TA1 601 B 1 
HETATM 11 C C08 TA1 . . . I 8 240.05 216.964 335.56 1 87.81 ? C08 TA1 601 B 1 
HETATM 12 C C09 TA1 . . . I 8 241.234 217.323 334.86 1 86.96 ? C09 TA1 601 B 1 
HETATM 13 C C10 TA1 . . . I 8 244.753 219.004 331.667 1 60.76 ? C10 TA1 601 B 1 
HETATM 14 C C11 TA1 . . . I 8 243.956 217.614 331.506 1 59.46 ? C11 TA1 601 B 1 
HETATM 15 O O04 TA1 . . . I 8 242.481 217.794 331.595 1 58.42 ? O04 TA1 601 B 1 
HETATM 16 C C12 TA1 . . . I 8 241.767 218.461 330.626 1 58.87 ? C12 TA1 601 B 1 
HETATM 17 O O05 TA1 . . . I 8 242.228 218.957 329.642 1 60.49 ? O05 TA1 601 B 1 
HETATM 18 C C13 TA1 . . . I 8 240.3 218.461 331.002 1 55.92 ? C13 TA1 601 B 1 
HETATM 19 C C14 TA1 . . . I 8 244.194 216.463 332.519 1 60.18 ? C14 TA1 601 B 1 
HETATM 20 O O06 TA1 . . . I 8 244.591 215.532 331.485 1 59.01 ? O06 TA1 601 B 1 
HETATM 21 C C15 TA1 . . . I 8 244.391 216.538 330.47 1 59.51 ? C15 TA1 601 B 1 
HETATM 22 C C16 TA1 . . . I 8 245.687 216.794 329.631 1 60.03 ? C16 TA1 601 B 1 
HETATM 23 C C17 TA1 . . . I 8 246.186 218.232 329.687 1 61.43 ? C17 TA1 601 B 1 
HETATM 24 O O07 TA1 . . . I 8 247.41 218.344 328.916 1 62.13 ? O07 TA1 601 B 1 
HETATM 25 C C18 TA1 . . . I 8 246.353 218.79 331.182 1 62.13 ? C18 TA1 601 B 1 
HETATM 26 C C19 TA1 . . . I 8 247.14 217.746 332.032 1 63.64 ? C19 TA1 601 B 1 
HETATM 27 C C20 TA1 . . . I 8 247.336 220.079 331.181 1 65.31 ? C20 TA1 601 B 1 
HETATM 28 O O08 TA1 . . . I 8 248.409 220.002 331.756 1 68.11 ? O08 TA1 601 B 1 
HETATM 29 C C21 TA1 . . . I 8 246.953 221.399 330.499 1 63.59 ? C21 TA1 601 B 1 
HETATM 30 O O09 TA1 . . . I 8 248.071 222.362 330.717 1 58.93 ? O09 TA1 601 B 1 
HETATM 31 C C22 TA1 . . . I 8 248.841 222.782 329.651 1 56.05 ? C22 TA1 601 B 1 
HETATM 32 O O10 TA1 . . . I 8 248.696 222.439 328.52 1 57.49 ? O10 TA1 601 B 1 
HETATM 33 C C23 TA1 . . . I 8 249.904 223.739 330.117 1 54.68 ? C23 TA1 601 B 1 
HETATM 34 C C24 TA1 . . . I 8 245.632 221.931 331.065 1 63.31 ? C24 TA1 601 B 1 
HETATM 35 C C25 TA1 . . . I 8 244.521 222.028 330.234 1 62.6 ? C25 TA1 601 B 1 
HETATM 36 C C26 TA1 . . . I 8 243.178 222.42 330.922 1 60.57 ? C26 TA1 601 B 1 
HETATM 37 O O11 TA1 . . . I 8 241.984 222.158 330.104 1 60.54 ? O11 TA1 601 B 1 
HETATM 38 C C27 TA1 . . . I 8 241.516 223.15 329.358 1 60.84 ? C27 TA1 601 B 1 
HETATM 39 O O12 TA1 . . . I 8 241.956 224.254 329.257 1 60.71 ? O12 TA1 601 B 1 
HETATM 40 C C28 TA1 . . . I 8 240.242 222.693 328.599 1 63.49 ? C28 TA1 601 B 1 
HETATM 41 O O13 TA1 . . . I 8 239.758 223.796 327.856 1 63.94 ? O13 TA1 601 B 1 
HETATM 42 C C29 TA1 . . . I 8 239.217 222.172 329.638 1 64.93 ? C29 TA1 601 B 1 
HETATM 43 N N01 TA1 . . . I 8 239.064 223.216 330.645 1 68.46 ? N01 TA1 601 B 1 
HETATM 44 C C30 TA1 . . . I 8 238.696 222.961 331.922 1 75.26 ? C30 TA1 601 B 1 
HETATM 45 O O14 TA1 . . . I 8 238.444 221.836 332.337 1 72.57 ? O14 TA1 601 B 1 
HETATM 46 C C31 TA1 . . . I 8 238.653 224.17 332.793 1 80.56 ? C31 TA1 601 B 1 
HETATM 47 C C32 TA1 . . . I 8 237.823 225.264 332.561 1 83.75 ? C32 TA1 601 B 1 
HETATM 48 C C33 TA1 . . . I 8 237.838 226.393 333.425 1 86.03 ? C33 TA1 601 B 1 
HETATM 49 C C34 TA1 . . . I 8 238.716 226.406 334.544 1 87.21 ? C34 TA1 601 B 1 
HETATM 50 C C35 TA1 . . . I 8 239.545 225.323 334.782 1 85.33 ? C35 TA1 601 B 1 
HETATM 51 C C36 TA1 . . . I 8 239.538 224.208 333.937 1 84.57 ? C36 TA1 601 B 1 
HETATM 52 C C37 TA1 . . . I 8 237.898 221.744 328.961 1 65.34 ? C37 TA1 601 B 1 
HETATM 53 C C38 TA1 . . . I 8 237.76 220.4 328.578 1 66.62 ? C38 TA1 601 B 1 
HETATM 54 C C39 TA1 . . . I 8 236.576 219.943 327.944 1 67.56 ? C39 TA1 601 B 1 
HETATM 55 C C40 TA1 . . . I 8 235.523 220.845 327.703 1 66.79 ? C40 TA1 601 B 1 
HETATM 56 C C41 TA1 . . . I 8 235.653 222.168 328.082 1 68.49 ? C41 TA1 601 B 1 
HETATM 57 C C42 TA1 . . . I 8 236.841 222.634 328.716 1 66.75 ? C42 TA1 601 B 1 
HETATM 58 C C43 TA1 . . . I 8 242.973 221.632 332.271 1 61.38 ? C43 TA1 601 B 1 
HETATM 59 C C44 TA1 . . . I 8 244.477 221.699 328.745 1 62.81 ? C44 TA1 601 B 1 
HETATM 60 C C45 TA1 . . . I 8 245.513 222.285 332.628 1 63.04 ? C45 TA1 601 B 1 
HETATM 61 C C46 TA1 . . . I 8 245.204 223.843 332.779 1 62.66 ? C46 TA1 601 B 1 
HETATM 62 C C47 TA1 . . . I 8 246.757 222.101 333.526 1 61.96 ? C47 TA1 601 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    66 
_model_server_stats.query_time_ms           1575 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           62 
#