data_5NDD # _model_server_result.job_id oBi9QUsUr-sDsR4ytn5ZOA _model_server_result.datetime_utc '2024-11-21 14:06:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ndd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2201}' # _entry.id 5NDD # _exptl.entry_id 5NDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 234.269 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (~{S})-(4-fluoranyl-2-propyl-phenyl)-(1~{H}-imidazol-2-yl)methanol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 104.88 _cell.angle_beta 90.88 _cell.angle_gamma 96.89 _cell.entry_id 5NDD _cell.length_a 37.109 _cell.length_b 62.264 _cell.length_c 87.341 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 277 A CYS 148 1_555 A SG CYS 355 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASP 250 A ASP 121 1_555 C NA NA . A NA 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 A OD1 ASN 287 A ASN 158 1_555 C NA NA . A NA 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc3 A OG SER 291 A SER 162 1_555 C NA NA . A NA 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc4 A OD1 ASN 565 A ASN 336 1_555 C NA NA . A NA 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc5 A OD2 ASP 569 A ASP 340 1_555 C NA NA . A NA 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc6 C NA NA . A NA 2202 1_555 E O HOH . A HOH 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? # _chem_comp.formula 'C13 H15 F N2 O' _chem_comp.formula_weight 234.269 _chem_comp.id 8TZ _chem_comp.mon_nstd_flag . _chem_comp.name (~{S})-(4-fluoranyl-2-propyl-phenyl)-(1~{H}-imidazol-2-yl)methanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C4 8TZ doub 1 n y C3 C2 8TZ sing 2 n y F1 C2 8TZ sing 3 n n C4 C5 8TZ sing 4 n y C2 C1 8TZ doub 5 n y N1 C11 8TZ sing 6 n y N1 C10 8TZ sing 7 n y C11 C12 8TZ doub 8 n y O1 C9 8TZ sing 9 n n C5 C9 8TZ sing 10 n n C5 C6 8TZ doub 11 n y C1 C6 8TZ sing 12 n y C10 C9 8TZ sing 13 n n C10 N2 8TZ doub 14 n y C6 C7 8TZ sing 15 n n C12 N2 8TZ sing 16 n y C8 C7 8TZ sing 17 n n C8 C13 8TZ sing 18 n n C1 H1 8TZ sing 19 n n C3 H2 8TZ sing 20 n n C4 H3 8TZ sing 21 n n C7 H4 8TZ sing 22 n n C7 H5 8TZ sing 23 n n C8 H6 8TZ sing 24 n n C8 H7 8TZ sing 25 n n C9 H8 8TZ sing 26 n n O1 H9 8TZ sing 27 n n N1 H10 8TZ sing 28 n n C11 H11 8TZ sing 29 n n C12 H12 8TZ sing 30 n n C13 H14 8TZ sing 31 n n C13 H15 8TZ sing 32 n n C13 H16 8TZ sing 33 n n # _atom_sites.entry_id 5NDD _atom_sites.fract_transf_matrix[1][1] 0.026948 _atom_sites.fract_transf_matrix[1][2] 0.003257 _atom_sites.fract_transf_matrix[1][3] 0.001306 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016178 _atom_sites.fract_transf_matrix[2][3] 0.004365 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8TZ A 1 2201 1 8TZ UNK . C 3 NA A 1 2202 1 NA NA . D 4 PO4 A 1 2203 1 PO4 PO4 . E 5 HOH A 1 2301 6 HOH HOH . E 5 HOH A 2 2302 7 HOH HOH . E 5 HOH A 3 2303 2 HOH HOH . E 5 HOH A 4 2304 1 HOH HOH . E 5 HOH A 5 2305 10 HOH HOH . E 5 HOH A 6 2306 8 HOH HOH . E 5 HOH A 7 2307 5 HOH HOH . E 5 HOH A 8 2308 9 HOH HOH . E 5 HOH A 9 2309 3 HOH HOH . E 5 HOH A 10 2310 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8TZ . . . B 2 14.509 6.753 55.807 1 42.72 ? C1 8TZ 2201 A 1 HETATM 2 C C2 8TZ . . . B 2 14.174 5.788 54.814 1 43.46 ? C2 8TZ 2201 A 1 HETATM 3 C C3 8TZ . . . B 2 15.168 4.943 54.287 1 38.89 ? C3 8TZ 2201 A 1 HETATM 4 C C4 8TZ . . . B 2 16.485 5.052 54.742 1 39.87 ? C4 8TZ 2201 A 1 HETATM 5 C C5 8TZ . . . B 2 16.819 6.007 55.725 1 42.2 ? C5 8TZ 2201 A 1 HETATM 6 C C6 8TZ . . . B 2 15.822 6.854 56.257 1 41.51 ? C6 8TZ 2201 A 1 HETATM 7 C C7 8TZ . . . B 2 16.189 7.893 57.329 1 40.13 ? C7 8TZ 2201 A 1 HETATM 8 C C8 8TZ . . . B 2 15.767 9.296 56.853 1 41.71 ? C8 8TZ 2201 A 1 HETATM 9 C C9 8TZ . . . B 2 18.236 6.113 56.207 1 40.3 ? C9 8TZ 2201 A 1 HETATM 10 C C10 8TZ . . . B 2 18.94 4.779 56.002 1 41.25 ? C10 8TZ 2201 A 1 HETATM 11 O O1 8TZ . . . B 2 18.917 7.111 55.481 1 39.34 ? O1 8TZ 2201 A 1 HETATM 12 N N1 8TZ . . . B 2 19.823 4.492 55.017 1 44.91 ? N1 8TZ 2201 A 1 HETATM 13 C C11 8TZ . . . B 2 20.221 3.21 55.182 1 45.85 ? C11 8TZ 2201 A 1 HETATM 14 C C12 8TZ . . . B 2 19.581 2.707 56.268 1 48.81 ? C12 8TZ 2201 A 1 HETATM 15 N N2 8TZ . . . B 2 18.791 3.674 56.774 1 43.37 ? N2 8TZ 2201 A 1 HETATM 16 F F1 8TZ . . . B 2 12.889 5.683 54.373 1 43.11 ? F1 8TZ 2201 A 1 HETATM 17 C C13 8TZ . . . B 2 16.232 10.379 57.931 1 41.81 ? C13 8TZ 2201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #