data_5NDT
#
_model_server_result.job_id            CsJ_cwyNLwP4QkxkBVAm-w 
_model_server_result.datetime_utc      '2024-11-29 21:34:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ndt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    5NDT 
#
_exptl.entry_id    5NDT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5NDT 
_cell.length_a            98.528 
_cell.length_b            98.528 
_cell.length_c            80.378 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NDT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 159 n n 
C1 C2 GOL sing 160 n n 
C1 H11 GOL sing 161 n n 
C1 H12 GOL sing 162 n n 
O1 HO1 GOL sing 163 n n 
C2 O2 GOL sing 164 n n 
C2 C3 GOL sing 165 n n 
C2 H2 GOL sing 166 n n 
O2 HO2 GOL sing 167 n n 
C3 O3 GOL sing 168 n n 
C3 H31 GOL sing 169 n n 
C3 H32 GOL sing 170 n n 
O3 HO3 GOL sing 171 n n 
#
_atom_sites.entry_id                     5NDT 
_atom_sites.fract_transf_matrix[1][1]    0.010149 
_atom_sites.fract_transf_matrix[1][2]    0.00586 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01172 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012441 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 401 1 GOL GOL . 
D 4 8UB A 1 402 1 8UB XXX . 
E 5 HOH A 1 501 34 HOH HOH . 
E 5 HOH A 2 502 106 HOH HOH . 
E 5 HOH A 3 503 81 HOH HOH . 
E 5 HOH A 4 504 113 HOH HOH . 
E 5 HOH A 5 505 64 HOH HOH . 
E 5 HOH A 6 506 80 HOH HOH . 
E 5 HOH A 7 507 65 HOH HOH . 
E 5 HOH A 8 508 8 HOH HOH . 
E 5 HOH A 9 509 29 HOH HOH . 
E 5 HOH A 10 510 97 HOH HOH . 
E 5 HOH A 11 511 33 HOH HOH . 
E 5 HOH A 12 512 40 HOH HOH . 
E 5 HOH A 13 513 36 HOH HOH . 
E 5 HOH A 14 514 82 HOH HOH . 
E 5 HOH A 15 515 27 HOH HOH . 
E 5 HOH A 16 516 131 HOH HOH . 
E 5 HOH A 17 517 58 HOH HOH . 
E 5 HOH A 18 518 9 HOH HOH . 
E 5 HOH A 19 519 87 HOH HOH . 
E 5 HOH A 20 520 88 HOH HOH . 
E 5 HOH A 21 521 93 HOH HOH . 
E 5 HOH A 22 522 30 HOH HOH . 
E 5 HOH A 23 523 16 HOH HOH . 
E 5 HOH A 24 524 77 HOH HOH . 
E 5 HOH A 25 525 130 HOH HOH . 
E 5 HOH A 26 526 5 HOH HOH . 
E 5 HOH A 27 527 78 HOH HOH . 
E 5 HOH A 28 528 134 HOH HOH . 
E 5 HOH A 29 529 55 HOH HOH . 
E 5 HOH A 30 530 101 HOH HOH . 
E 5 HOH A 31 531 2 HOH HOH . 
E 5 HOH A 32 532 13 HOH HOH . 
E 5 HOH A 33 533 121 HOH HOH . 
E 5 HOH A 34 534 110 HOH HOH . 
E 5 HOH A 35 535 71 HOH HOH . 
E 5 HOH A 36 536 31 HOH HOH . 
E 5 HOH A 37 537 35 HOH HOH . 
E 5 HOH A 38 538 122 HOH HOH . 
E 5 HOH A 39 539 98 HOH HOH . 
E 5 HOH A 40 540 54 HOH HOH . 
E 5 HOH A 41 541 10 HOH HOH . 
E 5 HOH A 42 542 4 HOH HOH . 
E 5 HOH A 43 543 89 HOH HOH . 
E 5 HOH A 44 544 124 HOH HOH . 
E 5 HOH A 45 545 26 HOH HOH . 
E 5 HOH A 46 546 12 HOH HOH . 
E 5 HOH A 47 547 37 HOH HOH . 
E 5 HOH A 48 548 91 HOH HOH . 
E 5 HOH A 49 549 53 HOH HOH . 
E 5 HOH A 50 550 1 HOH HOH . 
E 5 HOH A 51 551 14 HOH HOH . 
E 5 HOH A 52 552 76 HOH HOH . 
E 5 HOH A 53 553 128 HOH HOH . 
E 5 HOH A 54 554 24 HOH HOH . 
E 5 HOH A 55 555 119 HOH HOH . 
E 5 HOH A 56 556 69 HOH HOH . 
E 5 HOH A 57 557 112 HOH HOH . 
E 5 HOH A 58 558 74 HOH HOH . 
E 5 HOH A 59 559 96 HOH HOH . 
E 5 HOH A 60 560 57 HOH HOH . 
E 5 HOH A 61 561 22 HOH HOH . 
E 5 HOH A 62 562 67 HOH HOH . 
E 5 HOH A 63 563 49 HOH HOH . 
E 5 HOH A 64 564 11 HOH HOH . 
E 5 HOH A 65 565 115 HOH HOH . 
E 5 HOH A 66 566 126 HOH HOH . 
E 5 HOH A 67 567 21 HOH HOH . 
E 5 HOH A 68 568 133 HOH HOH . 
E 5 HOH A 69 569 39 HOH HOH . 
E 5 HOH A 70 570 20 HOH HOH . 
E 5 HOH A 71 571 44 HOH HOH . 
E 5 HOH A 72 572 100 HOH HOH . 
E 5 HOH A 73 573 129 HOH HOH . 
E 5 HOH A 74 574 42 HOH HOH . 
E 5 HOH A 75 575 50 HOH HOH . 
E 5 HOH A 76 576 28 HOH HOH . 
E 5 HOH A 77 577 45 HOH HOH . 
E 5 HOH A 78 578 86 HOH HOH . 
E 5 HOH A 79 579 127 HOH HOH . 
E 5 HOH A 80 580 66 HOH HOH . 
E 5 HOH A 81 581 32 HOH HOH . 
E 5 HOH A 82 582 23 HOH HOH . 
E 5 HOH A 83 583 90 HOH HOH . 
E 5 HOH A 84 584 114 HOH HOH . 
E 5 HOH A 85 585 83 HOH HOH . 
E 5 HOH A 86 586 92 HOH HOH . 
E 5 HOH A 87 587 63 HOH HOH . 
E 5 HOH A 88 588 84 HOH HOH . 
E 5 HOH A 89 589 38 HOH HOH . 
E 5 HOH A 90 590 79 HOH HOH . 
E 5 HOH A 91 591 51 HOH HOH . 
E 5 HOH A 92 592 7 HOH HOH . 
E 5 HOH A 93 593 43 HOH HOH . 
E 5 HOH A 94 594 15 HOH HOH . 
E 5 HOH A 95 595 111 HOH HOH . 
E 5 HOH A 96 596 60 HOH HOH . 
E 5 HOH A 97 597 18 HOH HOH . 
E 5 HOH A 98 598 25 HOH HOH . 
E 5 HOH A 99 599 17 HOH HOH . 
E 5 HOH A 100 600 59 HOH HOH . 
E 5 HOH A 101 601 72 HOH HOH . 
E 5 HOH A 102 602 102 HOH HOH . 
E 5 HOH A 103 603 70 HOH HOH . 
E 5 HOH A 104 604 118 HOH HOH . 
E 5 HOH A 105 605 132 HOH HOH . 
E 5 HOH A 106 606 3 HOH HOH . 
E 5 HOH A 107 607 68 HOH HOH . 
E 5 HOH A 108 608 73 HOH HOH . 
E 5 HOH A 109 609 46 HOH HOH . 
E 5 HOH A 110 610 117 HOH HOH . 
E 5 HOH A 111 611 125 HOH HOH . 
E 5 HOH A 112 612 94 HOH HOH . 
E 5 HOH A 113 613 105 HOH HOH . 
E 5 HOH A 114 614 95 HOH HOH . 
E 5 HOH A 115 615 123 HOH HOH . 
F 5 HOH B 1 101 75 HOH HOH . 
F 5 HOH B 2 102 108 HOH HOH . 
F 5 HOH B 3 103 107 HOH HOH . 
F 5 HOH B 4 104 61 HOH HOH . 
F 5 HOH B 5 105 99 HOH HOH . 
F 5 HOH B 6 106 116 HOH HOH . 
F 5 HOH B 7 107 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 131.562 -25.617 -16.386 1 62.63 ? C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . C 3 130.588 -26.157 -15.523 1 54.36 ? O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . C 3 132.894 -25.548 -15.643 1 64.92 ? C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . C 3 133.295 -26.83 -15.203 1 57.33 ? O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . C 3 133.968 -24.942 -16.538 1 64.15 ? C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . C 3 135.201 -24.924 -15.849 1 59.35 ? O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#