data_5NEB
#
_model_server_result.job_id            JaGdigx512v2TX-o6AOGkA 
_model_server_result.datetime_utc      '2024-11-28 19:33:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5neb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":309}' 
#
_entry.id    5NEB 
#
_exptl.entry_id    5NEB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              213.191 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3~{a}~{R},4~{S},6~{a}~{R})-1-methyl-4,5,6,6~{a}-tetrahydro-3~{a}~{H}-pyrrolo[3,4-c]pyrazole-3,4-dicarboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.41 
_cell.angle_gamma         90 
_cell.entry_id            5NEB 
_cell.length_a            51.862 
_cell.length_b            57.839 
_cell.length_c            89.302 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5NEB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,M,N,O,P,Q,R,S,U 1 1 
A,C,D,E,F,G,H,I,J,K,L,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 S N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             202 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              202 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             256 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              256 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.033 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H11 N3 O4' 
_chem_comp.formula_weight    213.191 
_chem_comp.id                8VE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3~{a}~{R},4~{S},6~{a}~{R})-1-methyl-4,5,6,6~{a}-tetrahydro-3~{a}~{H}-pyrrolo[3,4-c]pyrazole-3,4-dicarboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 N1 8VE sing 1 n n 
N2 N1 8VE sing 2 n n 
N2 C1 8VE doub 3 n n 
N1 C3 8VE sing 4 n n 
O3 C7 8VE doub 5 n n 
C2 N3 8VE sing 6 n n 
C2 C3 8VE sing 7 n n 
C1 C7 8VE sing 8 n n 
C1 C4 8VE sing 9 n n 
N3 C5 8VE sing 10 n n 
C7 O1 8VE sing 11 n n 
C3 C4 8VE sing 12 n n 
C4 C5 8VE sing 13 n n 
C5 C8 8VE sing 14 n n 
C8 O2 8VE doub 15 n n 
C8 O4 8VE sing 16 n n 
N3 H6 8VE sing 17 n n 
C4 H5 8VE sing 18 n n 
C5 H3 8VE sing 19 n n 
C6 H8 8VE sing 20 n n 
C6 H7 8VE sing 21 n n 
C6 H9 8VE sing 22 n n 
C2 H2 8VE sing 23 n n 
C2 H1 8VE sing 24 n n 
C3 H4 8VE sing 25 n n 
O1 H11 8VE sing 26 n n 
O4 H12 8VE sing 27 n n 
#
_atom_sites.entry_id                     5NEB 
_atom_sites.fract_transf_matrix[1][1]    0.019282 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004243 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017289 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 B 1 301 301 SO4 SO4 . 
D 2 SO4 B 1 302 302 SO4 SO4 . 
E 2 SO4 B 1 303 303 SO4 SO4 . 
F 2 SO4 B 1 304 304 SO4 SO4 . 
G 2 SO4 B 1 305 305 SO4 SO4 . 
H 3 CL B 1 306 306 CL CL . 
I 3 CL B 1 307 307 CL CL . 
J 4 GOL B 1 308 308 GOL GOL . 
K 5 8VE B 1 309 309 8VE 8YK . 
L 6 ACT B 1 310 310 ACT ACT . 
M 2 SO4 A 1 301 301 SO4 SO4 . 
N 2 SO4 A 1 302 302 SO4 SO4 . 
O 2 SO4 A 1 303 303 SO4 SO4 . 
P 3 CL A 1 304 304 CL CL . 
Q 3 CL A 1 305 305 CL CL . 
R 4 GOL A 1 306 306 GOL GOL . 
S 5 8VE A 1 307 307 8VE 8YK . 
T 7 HOH B 1 401 401 HOH HOH . 
T 7 HOH B 2 402 402 HOH HOH . 
T 7 HOH B 3 403 403 HOH HOH . 
T 7 HOH B 4 404 404 HOH HOH . 
T 7 HOH B 5 405 405 HOH HOH . 
T 7 HOH B 6 406 406 HOH HOH . 
T 7 HOH B 7 407 407 HOH HOH . 
T 7 HOH B 8 408 408 HOH HOH . 
T 7 HOH B 9 409 409 HOH HOH . 
T 7 HOH B 10 410 410 HOH HOH . 
T 7 HOH B 11 411 411 HOH HOH . 
T 7 HOH B 12 412 412 HOH HOH . 
T 7 HOH B 13 413 413 HOH HOH . 
T 7 HOH B 14 414 414 HOH HOH . 
T 7 HOH B 15 415 415 HOH HOH . 
T 7 HOH B 16 416 416 HOH HOH . 
T 7 HOH B 17 417 417 HOH HOH . 
T 7 HOH B 18 418 418 HOH HOH . 
T 7 HOH B 19 419 419 HOH HOH . 
T 7 HOH B 20 420 420 HOH HOH . 
T 7 HOH B 21 421 421 HOH HOH . 
T 7 HOH B 22 422 422 HOH HOH . 
T 7 HOH B 23 423 423 HOH HOH . 
T 7 HOH B 24 424 424 HOH HOH . 
T 7 HOH B 25 425 425 HOH HOH . 
T 7 HOH B 26 426 426 HOH HOH . 
T 7 HOH B 27 427 427 HOH HOH . 
T 7 HOH B 28 428 428 HOH HOH . 
T 7 HOH B 29 429 429 HOH HOH . 
T 7 HOH B 30 430 430 HOH HOH . 
T 7 HOH B 31 431 431 HOH HOH . 
T 7 HOH B 32 432 432 HOH HOH . 
T 7 HOH B 33 433 433 HOH HOH . 
T 7 HOH B 34 434 434 HOH HOH . 
T 7 HOH B 35 435 435 HOH HOH . 
T 7 HOH B 36 436 436 HOH HOH . 
T 7 HOH B 37 437 437 HOH HOH . 
T 7 HOH B 38 438 438 HOH HOH . 
T 7 HOH B 39 439 439 HOH HOH . 
T 7 HOH B 40 440 440 HOH HOH . 
T 7 HOH B 41 441 441 HOH HOH . 
T 7 HOH B 42 442 442 HOH HOH . 
T 7 HOH B 43 443 443 HOH HOH . 
T 7 HOH B 44 444 444 HOH HOH . 
T 7 HOH B 45 445 445 HOH HOH . 
T 7 HOH B 46 446 446 HOH HOH . 
T 7 HOH B 47 447 447 HOH HOH . 
T 7 HOH B 48 448 448 HOH HOH . 
T 7 HOH B 49 449 449 HOH HOH . 
T 7 HOH B 50 450 450 HOH HOH . 
T 7 HOH B 51 451 451 HOH HOH . 
T 7 HOH B 52 452 452 HOH HOH . 
T 7 HOH B 53 453 453 HOH HOH . 
T 7 HOH B 54 454 454 HOH HOH . 
U 7 HOH A 1 401 401 HOH HOH . 
U 7 HOH A 2 402 402 HOH HOH . 
U 7 HOH A 3 403 403 HOH HOH . 
U 7 HOH A 4 404 404 HOH HOH . 
U 7 HOH A 5 405 405 HOH HOH . 
U 7 HOH A 6 406 406 HOH HOH . 
U 7 HOH A 7 407 407 HOH HOH . 
U 7 HOH A 8 408 408 HOH HOH . 
U 7 HOH A 9 409 409 HOH HOH . 
U 7 HOH A 10 410 410 HOH HOH . 
U 7 HOH A 11 411 411 HOH HOH . 
U 7 HOH A 12 412 412 HOH HOH . 
U 7 HOH A 13 413 413 HOH HOH . 
U 7 HOH A 14 414 414 HOH HOH . 
U 7 HOH A 15 415 415 HOH HOH . 
U 7 HOH A 16 416 416 HOH HOH . 
U 7 HOH A 17 417 417 HOH HOH . 
U 7 HOH A 18 418 418 HOH HOH . 
U 7 HOH A 19 419 419 HOH HOH . 
U 7 HOH A 20 420 420 HOH HOH . 
U 7 HOH A 21 421 421 HOH HOH . 
U 7 HOH A 22 422 422 HOH HOH . 
U 7 HOH A 23 423 423 HOH HOH . 
U 7 HOH A 24 424 424 HOH HOH . 
U 7 HOH A 25 425 425 HOH HOH . 
U 7 HOH A 26 426 426 HOH HOH . 
U 7 HOH A 27 427 427 HOH HOH . 
U 7 HOH A 28 428 428 HOH HOH . 
U 7 HOH A 29 429 429 HOH HOH . 
U 7 HOH A 30 430 430 HOH HOH . 
U 7 HOH A 31 431 431 HOH HOH . 
U 7 HOH A 32 432 432 HOH HOH . 
U 7 HOH A 33 433 433 HOH HOH . 
U 7 HOH A 34 434 434 HOH HOH . 
U 7 HOH A 35 435 435 HOH HOH . 
U 7 HOH A 36 436 436 HOH HOH . 
U 7 HOH A 37 437 437 HOH HOH . 
U 7 HOH A 38 438 438 HOH HOH . 
U 7 HOH A 39 439 439 HOH HOH . 
U 7 HOH A 40 440 440 HOH HOH . 
U 7 HOH A 41 441 441 HOH HOH . 
U 7 HOH A 42 442 442 HOH HOH . 
U 7 HOH A 43 443 443 HOH HOH . 
U 7 HOH A 44 444 444 HOH HOH . 
U 7 HOH A 45 445 445 HOH HOH . 
U 7 HOH A 46 446 446 HOH HOH . 
U 7 HOH A 47 447 447 HOH HOH . 
U 7 HOH A 48 448 448 HOH HOH . 
U 7 HOH A 49 449 449 HOH HOH . 
U 7 HOH A 50 450 450 HOH HOH . 
U 7 HOH A 51 451 451 HOH HOH . 
U 7 HOH A 52 452 452 HOH HOH . 
U 7 HOH A 53 453 453 HOH HOH . 
U 7 HOH A 54 454 454 HOH HOH . 
U 7 HOH A 55 455 455 HOH HOH . 
U 7 HOH A 56 456 456 HOH HOH . 
U 7 HOH A 57 457 457 HOH HOH . 
U 7 HOH A 58 458 458 HOH HOH . 
U 7 HOH A 59 459 459 HOH HOH . 
U 7 HOH A 60 460 460 HOH HOH . 
U 7 HOH A 61 461 461 HOH HOH . 
U 7 HOH A 62 462 462 HOH HOH . 
U 7 HOH A 63 463 463 HOH HOH . 
U 7 HOH A 64 464 464 HOH HOH . 
U 7 HOH A 65 465 465 HOH HOH . 
U 7 HOH A 66 466 466 HOH HOH . 
U 7 HOH A 67 467 467 HOH HOH . 
U 7 HOH A 68 468 468 HOH HOH . 
U 7 HOH A 69 469 469 HOH HOH . 
U 7 HOH A 70 470 470 HOH HOH . 
U 7 HOH A 71 471 471 HOH HOH . 
U 7 HOH A 72 472 472 HOH HOH . 
U 7 HOH A 73 473 473 HOH HOH . 
U 7 HOH A 74 474 474 HOH HOH . 
U 7 HOH A 75 475 475 HOH HOH . 
U 7 HOH A 76 476 476 HOH HOH . 
U 7 HOH A 77 477 477 HOH HOH . 
U 7 HOH A 78 478 478 HOH HOH . 
U 7 HOH A 79 479 479 HOH HOH . 
U 7 HOH A 80 480 480 HOH HOH . 
U 7 HOH A 81 481 481 HOH HOH . 
U 7 HOH A 82 482 482 HOH HOH . 
U 7 HOH A 83 483 483 HOH HOH . 
U 7 HOH A 84 484 484 HOH HOH . 
U 7 HOH A 85 485 485 HOH HOH . 
U 7 HOH A 86 486 486 HOH HOH . 
U 7 HOH A 87 487 487 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 8VE . . . K 5 -5.988 -1.042 -10.585 1 35.41 ? N1 8VE 309 B 1 
HETATM 2 N N3 8VE . . . K 5 -7.047 -4.231 -9.681 1 28.83 ? N3 8VE 309 B 1 
HETATM 3 C C4 8VE . . . K 5 -5.453 -2.586 -8.84 1 30.01 ? C4 8VE 309 B 1 
HETATM 4 C C5 8VE . . . K 5 -5.87 -4.082 -8.701 1 27.57 ? C5 8VE 309 B 1 
HETATM 5 C C6 8VE . . . K 5 -6.59 -1.244 -11.982 1 38.64 ? C6 8VE 309 B 1 
HETATM 6 C C7 8VE . . . K 5 -2.894 -2.759 -9.499 1 29.68 ? C7 8VE 309 B 1 
HETATM 7 C C8 8VE . . . K 5 -6.329 -4.654 -7.32 1 24.45 ? C8 8VE 309 B 1 
HETATM 8 C C1 8VE . . . K 5 -4.274 -2.181 -9.754 1 31.45 ? C1 8VE 309 B 1 
HETATM 9 N N2 8VE . . . K 5 -4.567 -1.35 -10.695 1 34.58 ? N2 8VE 309 B 1 
HETATM 10 C C2 8VE . . . K 5 -7.74 -2.867 -9.768 1 30.04 ? C2 8VE 309 B 1 
HETATM 11 C C3 8VE . . . K 5 -6.633 -1.833 -9.433 1 31.74 ? C3 8VE 309 B 1 
HETATM 12 O O1 8VE . . . K 5 -2.683 -3.301 -8.389 1 29.1 ? O1 8VE 309 B 1 
HETATM 13 O O2 8VE . . . K 5 -7.383 -5.331 -7.245 1 24.77 ? O2 8VE 309 B 1 
HETATM 14 O O3 8VE . . . K 5 -2.038 -2.659 -10.41 1 28.3 ? O3 8VE 309 B 1 
HETATM 15 O O4 8VE . . . K 5 -5.621 -4.422 -6.319 1 22.4 ? O4 8VE 309 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           15 
#