data_5NEG # _model_server_result.job_id tFquMAlqCnmnBEqJMEcAWQ _model_server_result.datetime_utc '2024-11-26 05:36:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5neg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5NEG # _exptl.entry_id 5NEG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.56 _cell.angle_gamma 90 _cell.entry_id 5NEG _cell.length_a 34.81 _cell.length_b 44.36 _cell.length_c 72.47 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NEG _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 K N N # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 343 n n N O2 NO3 sing 344 n n N O3 NO3 sing 345 n n # _atom_sites.entry_id 5NEG _atom_sites.fract_transf_matrix[1][1] 0.028727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003304 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022543 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8VK A 1 201 1 8VK 213 . D 3 NO3 A 1 202 2 NO3 NO3 . E 3 NO3 A 1 203 3 NO3 NO3 . F 3 NO3 A 1 204 5 NO3 NO3 . G 3 NO3 A 1 205 6 NO3 NO3 . H 2 8VK B 1 201 1 8VK 213 . I 3 NO3 B 1 202 1 NO3 NO3 . J 3 NO3 B 1 203 4 NO3 NO3 . K 3 NO3 B 1 204 7 NO3 NO3 . L 4 SO4 B 1 205 2 SO4 SO4 . M 5 HOH A 1 301 190 HOH HOH . M 5 HOH A 2 302 210 HOH HOH . M 5 HOH A 3 303 265 HOH HOH . M 5 HOH A 4 304 212 HOH HOH . M 5 HOH A 5 305 150 HOH HOH . M 5 HOH A 6 306 242 HOH HOH . M 5 HOH A 7 307 151 HOH HOH . M 5 HOH A 8 308 80 HOH HOH . M 5 HOH A 9 309 35 HOH HOH . M 5 HOH A 10 310 227 HOH HOH . M 5 HOH A 11 311 158 HOH HOH . M 5 HOH A 12 312 72 HOH HOH . M 5 HOH A 13 313 205 HOH HOH . M 5 HOH A 14 314 61 HOH HOH . M 5 HOH A 15 315 207 HOH HOH . M 5 HOH A 16 316 162 HOH HOH . M 5 HOH A 17 317 181 HOH HOH . M 5 HOH A 18 318 102 HOH HOH . M 5 HOH A 19 319 152 HOH HOH . M 5 HOH A 20 320 46 HOH HOH . M 5 HOH A 21 321 246 HOH HOH . M 5 HOH A 22 322 123 HOH HOH . M 5 HOH A 23 323 76 HOH HOH . M 5 HOH A 24 324 237 HOH HOH . M 5 HOH A 25 325 261 HOH HOH . M 5 HOH A 26 326 88 HOH HOH . M 5 HOH A 27 327 69 HOH HOH . M 5 HOH A 28 328 121 HOH HOH . M 5 HOH A 29 329 157 HOH HOH . M 5 HOH A 30 330 77 HOH HOH . M 5 HOH A 31 331 12 HOH HOH . M 5 HOH A 32 332 28 HOH HOH . M 5 HOH A 33 333 13 HOH HOH . M 5 HOH A 34 334 20 HOH HOH . M 5 HOH A 35 335 185 HOH HOH . M 5 HOH A 36 336 1 HOH HOH . M 5 HOH A 37 337 193 HOH HOH . M 5 HOH A 38 338 2 HOH HOH . M 5 HOH A 39 339 49 HOH HOH . M 5 HOH A 40 340 68 HOH HOH . M 5 HOH A 41 341 111 HOH HOH . M 5 HOH A 42 342 4 HOH HOH . M 5 HOH A 43 343 71 HOH HOH . M 5 HOH A 44 344 37 HOH HOH . M 5 HOH A 45 345 83 HOH HOH . M 5 HOH A 46 346 55 HOH HOH . M 5 HOH A 47 347 41 HOH HOH . M 5 HOH A 48 348 191 HOH HOH . M 5 HOH A 49 349 14 HOH HOH . M 5 HOH A 50 350 197 HOH HOH . M 5 HOH A 51 351 138 HOH HOH . M 5 HOH A 52 352 51 HOH HOH . M 5 HOH A 53 353 169 HOH HOH . M 5 HOH A 54 354 24 HOH HOH . M 5 HOH A 55 355 208 HOH HOH . M 5 HOH A 56 356 19 HOH HOH . M 5 HOH A 57 357 8 HOH HOH . M 5 HOH A 58 358 245 HOH HOH . M 5 HOH A 59 359 22 HOH HOH . M 5 HOH A 60 360 6 HOH HOH . M 5 HOH A 61 361 186 HOH HOH . M 5 HOH A 62 362 230 HOH HOH . M 5 HOH A 63 363 63 HOH HOH . M 5 HOH A 64 364 118 HOH HOH . M 5 HOH A 65 365 156 HOH HOH . M 5 HOH A 66 366 7 HOH HOH . M 5 HOH A 67 367 15 HOH HOH . M 5 HOH A 68 368 153 HOH HOH . M 5 HOH A 69 369 229 HOH HOH . M 5 HOH A 70 370 167 HOH HOH . M 5 HOH A 71 371 62 HOH HOH . M 5 HOH A 72 372 3 HOH HOH . M 5 HOH A 73 373 97 HOH HOH . M 5 HOH A 74 374 159 HOH HOH . M 5 HOH A 75 375 58 HOH HOH . M 5 HOH A 76 376 133 HOH HOH . M 5 HOH A 77 377 144 HOH HOH . M 5 HOH A 78 378 163 HOH HOH . M 5 HOH A 79 379 103 HOH HOH . M 5 HOH A 80 380 52 HOH HOH . M 5 HOH A 81 381 266 HOH HOH . M 5 HOH A 82 382 225 HOH HOH . M 5 HOH A 83 383 26 HOH HOH . M 5 HOH A 84 384 228 HOH HOH . M 5 HOH A 85 385 9 HOH HOH . M 5 HOH A 86 386 160 HOH HOH . M 5 HOH A 87 387 54 HOH HOH . M 5 HOH A 88 388 60 HOH HOH . M 5 HOH A 89 389 223 HOH HOH . M 5 HOH A 90 390 268 HOH HOH . M 5 HOH A 91 391 30 HOH HOH . M 5 HOH A 92 392 130 HOH HOH . M 5 HOH A 93 393 217 HOH HOH . M 5 HOH A 94 394 11 HOH HOH . M 5 HOH A 95 395 182 HOH HOH . M 5 HOH A 96 396 192 HOH HOH . M 5 HOH A 97 397 27 HOH HOH . M 5 HOH A 98 398 204 HOH HOH . M 5 HOH A 99 399 161 HOH HOH . M 5 HOH A 100 400 195 HOH HOH . M 5 HOH A 101 401 260 HOH HOH . M 5 HOH A 102 402 172 HOH HOH . M 5 HOH A 103 403 48 HOH HOH . M 5 HOH A 104 404 247 HOH HOH . M 5 HOH A 105 405 194 HOH HOH . M 5 HOH A 106 406 100 HOH HOH . M 5 HOH A 107 407 109 HOH HOH . M 5 HOH A 108 408 94 HOH HOH . M 5 HOH A 109 409 137 HOH HOH . M 5 HOH A 110 410 53 HOH HOH . M 5 HOH A 111 411 90 HOH HOH . M 5 HOH A 112 412 82 HOH HOH . M 5 HOH A 113 413 224 HOH HOH . M 5 HOH A 114 414 132 HOH HOH . M 5 HOH A 115 415 249 HOH HOH . M 5 HOH A 116 416 33 HOH HOH . M 5 HOH A 117 417 112 HOH HOH . M 5 HOH A 118 418 200 HOH HOH . M 5 HOH A 119 419 248 HOH HOH . M 5 HOH A 120 420 251 HOH HOH . M 5 HOH A 121 421 178 HOH HOH . M 5 HOH A 122 422 154 HOH HOH . M 5 HOH A 123 423 234 HOH HOH . M 5 HOH A 124 424 269 HOH HOH . M 5 HOH A 125 425 107 HOH HOH . M 5 HOH A 126 426 236 HOH HOH . M 5 HOH A 127 427 231 HOH HOH . M 5 HOH A 128 428 203 HOH HOH . M 5 HOH A 129 429 270 HOH HOH . M 5 HOH A 130 430 47 HOH HOH . M 5 HOH A 131 431 95 HOH HOH . M 5 HOH A 132 432 201 HOH HOH . M 5 HOH A 133 433 215 HOH HOH . M 5 HOH A 134 434 255 HOH HOH . M 5 HOH A 135 435 65 HOH HOH . M 5 HOH A 136 436 64 HOH HOH . M 5 HOH A 137 437 176 HOH HOH . M 5 HOH A 138 438 267 HOH HOH . M 5 HOH A 139 439 256 HOH HOH . M 5 HOH A 140 440 127 HOH HOH . N 5 HOH B 1 301 221 HOH HOH . N 5 HOH B 2 302 196 HOH HOH . N 5 HOH B 3 303 43 HOH HOH . N 5 HOH B 4 304 214 HOH HOH . N 5 HOH B 5 305 128 HOH HOH . N 5 HOH B 6 306 262 HOH HOH . N 5 HOH B 7 307 213 HOH HOH . N 5 HOH B 8 308 155 HOH HOH . N 5 HOH B 9 309 235 HOH HOH . N 5 HOH B 10 310 184 HOH HOH . N 5 HOH B 11 311 170 HOH HOH . N 5 HOH B 12 312 183 HOH HOH . N 5 HOH B 13 313 258 HOH HOH . N 5 HOH B 14 314 42 HOH HOH . N 5 HOH B 15 315 233 HOH HOH . N 5 HOH B 16 316 257 HOH HOH . N 5 HOH B 17 317 31 HOH HOH . N 5 HOH B 18 318 34 HOH HOH . N 5 HOH B 19 319 189 HOH HOH . N 5 HOH B 20 320 120 HOH HOH . N 5 HOH B 21 321 57 HOH HOH . N 5 HOH B 22 322 232 HOH HOH . N 5 HOH B 23 323 211 HOH HOH . N 5 HOH B 24 324 114 HOH HOH . N 5 HOH B 25 325 38 HOH HOH . N 5 HOH B 26 326 10 HOH HOH . N 5 HOH B 27 327 241 HOH HOH . N 5 HOH B 28 328 250 HOH HOH . N 5 HOH B 29 329 116 HOH HOH . N 5 HOH B 30 330 87 HOH HOH . N 5 HOH B 31 331 101 HOH HOH . N 5 HOH B 32 332 36 HOH HOH . N 5 HOH B 33 333 25 HOH HOH . N 5 HOH B 34 334 113 HOH HOH . N 5 HOH B 35 335 263 HOH HOH . N 5 HOH B 36 336 18 HOH HOH . N 5 HOH B 37 337 179 HOH HOH . N 5 HOH B 38 338 5 HOH HOH . N 5 HOH B 39 339 23 HOH HOH . N 5 HOH B 40 340 84 HOH HOH . N 5 HOH B 41 341 17 HOH HOH . N 5 HOH B 42 342 67 HOH HOH . N 5 HOH B 43 343 110 HOH HOH . N 5 HOH B 44 344 264 HOH HOH . N 5 HOH B 45 345 202 HOH HOH . N 5 HOH B 46 346 166 HOH HOH . N 5 HOH B 47 347 50 HOH HOH . N 5 HOH B 48 348 39 HOH HOH . N 5 HOH B 49 349 119 HOH HOH . N 5 HOH B 50 350 40 HOH HOH . N 5 HOH B 51 351 218 HOH HOH . N 5 HOH B 52 352 78 HOH HOH . N 5 HOH B 53 353 66 HOH HOH . N 5 HOH B 54 354 180 HOH HOH . N 5 HOH B 55 355 165 HOH HOH . N 5 HOH B 56 356 44 HOH HOH . N 5 HOH B 57 357 93 HOH HOH . N 5 HOH B 58 358 70 HOH HOH . N 5 HOH B 59 359 21 HOH HOH . N 5 HOH B 60 360 85 HOH HOH . N 5 HOH B 61 361 117 HOH HOH . N 5 HOH B 62 362 164 HOH HOH . N 5 HOH B 63 363 171 HOH HOH . N 5 HOH B 64 364 259 HOH HOH . N 5 HOH B 65 365 141 HOH HOH . N 5 HOH B 66 366 96 HOH HOH . N 5 HOH B 67 367 91 HOH HOH . N 5 HOH B 68 368 134 HOH HOH . N 5 HOH B 69 369 73 HOH HOH . N 5 HOH B 70 370 146 HOH HOH . N 5 HOH B 71 371 74 HOH HOH . N 5 HOH B 72 372 92 HOH HOH . N 5 HOH B 73 373 209 HOH HOH . N 5 HOH B 74 374 199 HOH HOH . N 5 HOH B 75 375 226 HOH HOH . N 5 HOH B 76 376 240 HOH HOH . N 5 HOH B 77 377 32 HOH HOH . N 5 HOH B 78 378 56 HOH HOH . N 5 HOH B 79 379 188 HOH HOH . N 5 HOH B 80 380 177 HOH HOH . N 5 HOH B 81 381 105 HOH HOH . N 5 HOH B 82 382 187 HOH HOH . N 5 HOH B 83 383 126 HOH HOH . N 5 HOH B 84 384 75 HOH HOH . N 5 HOH B 85 385 175 HOH HOH . N 5 HOH B 86 386 220 HOH HOH . N 5 HOH B 87 387 244 HOH HOH . N 5 HOH B 88 388 173 HOH HOH . N 5 HOH B 89 389 89 HOH HOH . N 5 HOH B 90 390 198 HOH HOH . N 5 HOH B 91 391 16 HOH HOH . N 5 HOH B 92 392 222 HOH HOH . N 5 HOH B 93 393 79 HOH HOH . N 5 HOH B 94 394 139 HOH HOH . N 5 HOH B 95 395 219 HOH HOH . N 5 HOH B 96 396 253 HOH HOH . N 5 HOH B 97 397 206 HOH HOH . N 5 HOH B 98 398 104 HOH HOH . N 5 HOH B 99 399 252 HOH HOH . N 5 HOH B 100 400 238 HOH HOH . N 5 HOH B 101 401 142 HOH HOH . N 5 HOH B 102 402 115 HOH HOH . N 5 HOH B 103 403 254 HOH HOH . N 5 HOH B 104 404 45 HOH HOH . N 5 HOH B 105 405 243 HOH HOH . N 5 HOH B 106 406 129 HOH HOH . N 5 HOH B 107 407 239 HOH HOH . N 5 HOH B 108 408 216 HOH HOH . N 5 HOH B 109 409 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . A . D 3 1.059 -35.273 18.733 0.61 16.4 ? N NO3 202 A 1 HETATM 2 N N NO3 . B . D 3 1.009 -35.038 18.999 0.39 26.95 ? N NO3 202 A 1 HETATM 3 O O1 NO3 . A . D 3 0.295 -34.364 19.204 0.61 16.59 ? O1 NO3 202 A 1 HETATM 4 O O1 NO3 . B . D 3 0.432 -33.929 18.833 0.39 28.05 ? O1 NO3 202 A 1 HETATM 5 O O2 NO3 . A . D 3 0.847 -35.777 17.589 0.61 19.81 ? O2 NO3 202 A 1 HETATM 6 O O2 NO3 . B . D 3 1.905 -35.443 18.2 0.39 25.78 ? O2 NO3 202 A 1 HETATM 7 O O3 NO3 . A . D 3 2.039 -35.685 19.392 0.61 16.02 ? O3 NO3 202 A 1 HETATM 8 O O3 NO3 . B . D 3 0.678 -35.741 19.981 0.39 26.94 ? O3 NO3 202 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #